Wall clock time and date at job start Mon Mar 30 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47356 * 2 1 4 4 C 1.53000 * 109.47396 * 239.99885 * 2 1 3 5 5 C 1.50693 * 109.47475 * 174.99852 * 4 2 1 6 6 H 1.08007 * 119.99854 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00259 * 179.97438 * 5 4 2 8 8 N 1.31507 * 119.99935 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00081 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46844 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46901 * 120.00025 * 9 7 5 12 12 H 1.48490 * 109.47370 * 240.00289 * 9 7 5 13 13 O 1.42902 * 109.47095 * 120.00064 * 2 1 3 14 14 C 1.35894 * 117.00036 * 274.91455 * 13 2 1 15 15 C 1.38763 * 120.17443 * 5.43936 * 14 13 2 16 16 C 1.37832 * 119.71806 * 180.11873 * 15 14 13 17 17 C 1.38967 * 120.61983 * 0.02562 * 16 15 14 18 18 C 1.37708 * 119.76682 * 359.70571 * 17 16 15 19 19 C 1.38432 * 120.17717 * 185.41960 * 14 13 2 20 20 C 1.50644 * 122.55161 * 180.75928 * 18 17 16 21 21 C 1.52724 * 110.58493 * 341.88576 * 20 18 17 22 22 C 1.53321 * 108.38546 * 51.20319 * 21 20 18 23 23 C 1.50655 * 117.69904 * 179.33335 * 17 16 15 24 24 H 1.09003 * 109.46895 * 59.99865 * 1 2 3 25 25 H 1.09000 * 109.47302 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47220 * 299.99864 * 1 2 3 27 27 H 1.08999 * 109.47133 * 295.00218 * 4 2 1 28 28 H 1.09006 * 109.46584 * 55.00078 * 4 2 1 29 29 H 0.97001 * 120.00361 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.14310 * 0.38841 * 15 14 13 31 31 H 1.07997 * 119.69335 * 179.97438 * 16 15 14 32 32 H 1.08004 * 119.74295 * 359.97438 * 19 14 13 33 33 H 1.08999 * 109.25212 * 102.17422 * 20 18 17 34 34 H 1.09002 * 109.24717 * 221.60391 * 20 18 17 35 35 H 1.08994 * 109.68483 * 170.93148 * 21 20 18 36 36 H 1.09006 * 109.68368 * 291.48604 * 21 20 18 37 37 H 1.09006 * 109.67359 * 49.90478 * 22 21 20 38 38 H 1.08997 * 109.68015 * 170.44622 * 22 21 20 39 39 H 1.08994 * 109.24863 * 282.65717 * 23 17 16 40 40 H 1.09001 * 109.24566 * 42.07419 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3578 8 7 3.5765 -1.8378 -3.2994 9 14 6.0922 -1.0623 -2.4361 10 1 6.5838 -0.2927 -1.2650 11 1 6.6856 -2.4235 -2.4178 12 1 6.4873 -0.3668 -3.6871 13 8 2.0063 -0.6737 1.1668 14 6 2.1142 0.0629 2.3037 15 6 1.6642 1.3754 2.3297 16 6 1.7805 2.1147 3.4872 17 6 2.3447 1.5583 4.6288 18 6 2.7869 0.2543 4.6070 19 6 2.6731 -0.4921 3.4420 20 6 3.3927 -0.4164 5.8122 21 6 3.8430 0.6237 6.8358 22 6 2.6735 1.5790 7.1011 23 6 2.4533 2.4303 5.8525 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1369 29 1 4.0609 -2.2446 -4.0348 30 1 1.2209 1.8143 1.4482 31 1 1.4306 3.1362 3.5069 32 1 3.0231 -1.5137 3.4237 33 1 2.6517 -1.0727 6.2686 34 1 4.2526 -1.0087 5.4994 35 1 4.1286 0.1267 7.7629 36 1 4.6917 1.1830 6.4420 37 1 1.7725 1.0049 7.3176 38 1 2.9108 2.2235 7.9475 39 1 3.2922 3.1156 5.7322 40 1 1.5341 3.0050 5.9669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:16 Heat of formation + Delta-G solvation = -47.486534 kcal Electronic energy + Delta-G solvation = -19234.930287 eV Core-core repulsion = 16399.360878 eV Total energy + Delta-G solvation = -2835.569409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11100 -38.35106 -35.27921 -33.39397 -32.39810 -31.42247 -29.51344 -28.18125 -27.44893 -23.63462 -23.39805 -22.52393 -21.97393 -20.45235 -18.85496 -17.35371 -16.36439 -15.80312 -15.49824 -14.81661 -14.51710 -14.42502 -14.14867 -13.87310 -13.26234 -13.14640 -12.84891 -12.76104 -12.37375 -12.07138 -11.89070 -11.72527 -11.61114 -11.37062 -11.03518 -10.96549 -10.77065 -10.68108 -10.45541 -10.37936 -10.23197 -9.89783 -9.35273 -9.07848 -8.46956 -8.38342 -7.53268 -6.01169 -4.02267 1.62350 1.79727 3.32152 3.39569 3.45287 3.92790 4.06856 4.46976 4.71315 4.73570 4.82876 5.12355 5.17996 5.26793 5.36120 5.44359 5.51872 5.56248 5.57245 5.65996 5.71637 5.78629 5.82873 5.89842 5.94861 5.96272 6.05507 6.13078 6.22276 6.27783 6.34101 6.58547 6.64561 6.71572 6.86478 6.90728 7.15095 7.51495 7.61111 7.95795 8.20966 8.38260 9.01732 9.61136 11.10364 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.004866 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.186403 B = 5752.519155 C = 6436.564926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.087 3.913 3 H 0.062 0.938 4 C 0.025 3.975 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 O -0.292 6.292 14 C 0.151 3.849 15 C -0.214 4.214 16 C -0.082 4.082 17 C -0.134 4.134 18 C -0.039 4.039 19 C -0.167 4.167 20 C -0.080 4.080 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.070 4.070 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.038 0.962 29 H 0.260 0.740 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 6.888 18.078 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.031 3.969 3 H 0.080 0.920 4 C -0.012 4.012 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.210 1.210 13 O -0.204 6.204 14 C 0.104 3.896 15 C -0.232 4.232 16 C -0.100 4.100 17 C -0.135 4.135 18 C -0.039 4.039 19 C -0.186 4.186 20 C -0.117 4.117 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.107 4.107 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.627 6.581 17.857 19.374 hybrid contribution 0.897 0.212 -0.424 1.015 sum -2.730 6.793 17.433 18.908 Atomic orbital electron populations 1.22410 0.97085 1.02566 1.01393 1.22852 0.91762 0.97108 0.85176 0.92022 1.19271 0.96604 0.96491 0.88801 1.21167 0.91706 1.34334 1.07874 0.92566 1.24974 0.98463 0.95243 0.95664 1.69957 1.35468 1.36091 1.12140 0.86530 0.85779 0.77847 0.77876 1.19723 1.20942 1.21021 1.86268 1.79885 1.38012 1.16251 1.19099 0.92685 0.90216 0.87624 1.21298 1.07359 0.94863 0.99719 1.20860 0.98086 0.98913 0.92114 1.19326 1.04084 0.94365 0.95692 1.19266 0.97439 0.93056 0.94173 1.20402 1.05648 1.01205 0.91309 1.20455 1.00317 0.97591 0.93306 1.21534 0.98252 0.97275 0.98544 1.21532 0.98801 0.98128 0.97160 1.20318 1.01613 0.96819 0.91986 0.91437 0.91951 0.93309 0.95306 0.94406 0.93009 0.85327 0.86576 0.85625 0.90728 0.90696 0.91714 0.91632 0.91764 0.91875 0.91394 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 9.18 37.16 0.34 -2.74 16 2 C 0.09 1.84 2.17 -26.73 -0.06 1.78 16 3 H 0.06 1.28 6.32 -51.93 -0.33 0.96 16 4 C 0.03 0.65 4.68 -27.89 -0.13 0.52 16 5 C -0.51 -14.72 8.88 -34.44 -0.31 -15.02 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 O -0.29 -6.43 9.55 -19.41 -0.19 -6.62 16 14 C 0.15 2.88 6.59 -39.32 -0.26 2.62 16 15 C -0.21 -3.60 8.25 -39.54 -0.33 -3.93 16 16 C -0.08 -1.18 9.60 -39.46 -0.38 -1.56 16 17 C -0.13 -1.86 5.74 -104.57 -0.60 -2.46 16 18 C -0.04 -0.57 5.74 -104.63 -0.60 -1.17 16 19 C -0.17 -2.87 9.55 -39.29 -0.38 -3.25 16 20 C -0.08 -0.91 5.67 -28.05 -0.16 -1.06 16 21 C -0.12 -1.13 5.98 -26.71 -0.16 -1.29 16 22 C -0.12 -1.08 5.98 -26.71 -0.16 -1.24 16 23 C -0.07 -0.74 5.67 -28.05 -0.16 -0.90 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.76 6.93 -51.93 -0.36 0.40 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.13 2.07 5.46 -52.49 -0.29 1.79 16 31 H 0.12 1.38 8.05 -52.49 -0.42 0.96 16 32 H 0.13 2.09 8.05 -52.48 -0.42 1.67 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -30.87 321.27 -9.48 -40.35 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.43 Total: -1.29 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -3.43 Total: -28.13 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.19 Total: -6.62 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.87 -9.48 -40.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.137 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds