Wall clock time and date at job start Mon Mar 30 2020 06:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47356 * 2 1 4 4 C 1.53000 * 109.47396 * 239.99885 * 2 1 3 5 5 C 1.50693 * 109.47475 * 174.99852 * 4 2 1 6 6 H 1.08007 * 119.99854 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00259 * 179.97438 * 5 4 2 8 8 N 1.31507 * 119.99935 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00081 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46844 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46901 * 120.00025 * 9 7 5 12 12 H 1.48490 * 109.47370 * 240.00289 * 9 7 5 13 13 O 1.42902 * 109.47095 * 120.00064 * 2 1 3 14 14 C 1.35894 * 117.00036 * 274.91455 * 13 2 1 15 15 C 1.38763 * 120.17443 * 5.43936 * 14 13 2 16 16 C 1.37832 * 119.71806 * 180.11873 * 15 14 13 17 17 C 1.38967 * 120.61983 * 0.02562 * 16 15 14 18 18 C 1.37708 * 119.76682 * 359.70571 * 17 16 15 19 19 C 1.38432 * 120.17717 * 185.41960 * 14 13 2 20 20 C 1.50644 * 122.55161 * 180.75928 * 18 17 16 21 21 C 1.52724 * 110.58493 * 341.88576 * 20 18 17 22 22 C 1.53321 * 108.38546 * 51.20319 * 21 20 18 23 23 C 1.50655 * 117.69904 * 179.33335 * 17 16 15 24 24 H 1.09003 * 109.46895 * 59.99865 * 1 2 3 25 25 H 1.09000 * 109.47302 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47220 * 299.99864 * 1 2 3 27 27 H 1.08999 * 109.47133 * 295.00218 * 4 2 1 28 28 H 1.09006 * 109.46584 * 55.00078 * 4 2 1 29 29 H 0.97001 * 120.00361 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.14310 * 0.38841 * 15 14 13 31 31 H 1.07997 * 119.69335 * 179.97438 * 16 15 14 32 32 H 1.08004 * 119.74295 * 359.97438 * 19 14 13 33 33 H 1.08999 * 109.25212 * 102.17422 * 20 18 17 34 34 H 1.09002 * 109.24717 * 221.60391 * 20 18 17 35 35 H 1.08994 * 109.68483 * 170.93148 * 21 20 18 36 36 H 1.09006 * 109.68368 * 291.48604 * 21 20 18 37 37 H 1.09006 * 109.67359 * 49.90478 * 22 21 20 38 38 H 1.08997 * 109.68015 * 170.44622 * 22 21 20 39 39 H 1.08994 * 109.24863 * 282.65717 * 23 17 16 40 40 H 1.09001 * 109.24566 * 42.07419 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3578 8 7 3.5765 -1.8378 -3.2994 9 14 6.0922 -1.0623 -2.4361 10 1 6.5838 -0.2927 -1.2650 11 1 6.6856 -2.4235 -2.4178 12 1 6.4873 -0.3668 -3.6871 13 8 2.0063 -0.6737 1.1668 14 6 2.1142 0.0629 2.3037 15 6 1.6642 1.3754 2.3297 16 6 1.7805 2.1147 3.4872 17 6 2.3447 1.5583 4.6288 18 6 2.7869 0.2543 4.6070 19 6 2.6731 -0.4921 3.4420 20 6 3.3927 -0.4164 5.8122 21 6 3.8430 0.6237 6.8358 22 6 2.6735 1.5790 7.1011 23 6 2.4533 2.4303 5.8525 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1369 29 1 4.0609 -2.2446 -4.0348 30 1 1.2209 1.8143 1.4482 31 1 1.4306 3.1362 3.5069 32 1 3.0231 -1.5137 3.4237 33 1 2.6517 -1.0727 6.2686 34 1 4.2526 -1.0087 5.4994 35 1 4.1286 0.1267 7.7629 36 1 4.6917 1.1830 6.4420 37 1 1.7725 1.0049 7.3176 38 1 2.9108 2.2235 7.9475 39 1 3.2922 3.1156 5.7322 40 1 1.5341 3.0050 5.9669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:15 Heat of formation + Delta-G solvation = -63.102821 kcal Electronic energy + Delta-G solvation = -19235.607460 eV Core-core repulsion = 16399.360878 eV Total energy + Delta-G solvation = -2836.246582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37235 -39.66345 -36.44074 -35.31400 -33.72451 -32.99537 -30.61499 -29.44242 -29.22698 -25.37992 -24.53015 -23.81182 -23.11443 -21.88524 -20.03134 -18.80364 -18.51185 -17.09072 -16.72349 -16.35570 -16.05033 -15.81271 -15.25733 -14.78271 -14.65680 -14.38558 -14.18666 -14.03857 -13.79730 -13.41910 -13.36526 -13.31469 -12.99901 -12.90885 -12.69033 -12.41892 -12.30502 -11.95426 -11.72069 -11.56969 -11.37377 -11.28553 -11.15611 -11.00216 -10.61965 -9.67164 -8.83998 -8.24168 -6.33382 0.40575 0.55125 1.35166 1.36241 1.49406 2.37667 2.46436 2.81885 3.10208 3.78087 3.85092 3.94760 4.06416 4.09925 4.19137 4.23524 4.29840 4.34877 4.42600 4.58925 4.62125 4.70513 4.75561 4.86083 4.97260 4.98042 5.08611 5.09875 5.14631 5.16001 5.20774 5.26421 5.34754 5.45104 5.50833 5.54491 5.56694 5.73029 5.77185 6.03253 6.16492 6.71937 6.78895 7.34254 8.87858 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.004866 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.186403 B = 5752.519155 C = 6436.564926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 H 0.063 0.937 4 C 0.029 3.971 5 C -0.532 4.532 6 H 0.047 0.953 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.270 1.270 11 H -0.277 1.277 12 H -0.271 1.271 13 O -0.324 6.324 14 C 0.113 3.887 15 C -0.223 4.223 16 C -0.082 4.082 17 C -0.130 4.130 18 C -0.042 4.042 19 C -0.186 4.186 20 C -0.082 4.082 21 C -0.116 4.116 22 C -0.117 4.117 23 C -0.071 4.071 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.070 0.930 27 H -0.002 1.002 28 H 0.026 0.974 29 H 0.265 0.735 30 H 0.131 0.869 31 H 0.147 0.853 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 8.706 20.543 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.008 4.008 5 C -0.570 4.570 6 H 0.066 0.934 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.195 1.195 11 H -0.202 1.202 12 H -0.196 1.196 13 O -0.239 6.239 14 C 0.067 3.933 15 C -0.242 4.242 16 C -0.100 4.100 17 C -0.130 4.130 18 C -0.042 4.042 19 C -0.205 4.205 20 C -0.119 4.119 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.108 4.108 24 H 0.101 0.899 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.016 0.984 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.149 0.851 31 H 0.165 0.835 32 H 0.135 0.865 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.107 8.408 20.338 22.225 hybrid contribution 0.732 -0.341 -1.093 1.359 sum -2.375 8.067 19.245 21.002 Atomic orbital electron populations 1.22299 0.94125 1.02748 1.03146 1.22562 0.93975 0.95976 0.83596 0.91900 1.19118 0.95550 0.95068 0.91097 1.21462 0.93269 1.34480 1.07798 0.93431 1.25851 1.03536 0.94722 0.95197 1.70063 1.37491 1.36730 1.12737 0.85468 0.79662 0.78115 0.78251 1.19459 1.20243 1.19645 1.86169 1.81166 1.39288 1.17229 1.19416 0.95291 0.91485 0.87122 1.21411 1.07685 0.94166 1.00934 1.21259 0.97299 1.00060 0.91333 1.19846 1.01929 0.94289 0.96913 1.19668 0.96819 0.93488 0.94212 1.20608 1.06307 1.01436 0.92120 1.20552 1.00384 0.98271 0.92661 1.21553 0.98297 0.96875 0.98643 1.21555 0.98534 0.98148 0.97189 1.20435 1.02937 0.96613 0.90837 0.89931 0.92564 0.91157 0.98385 0.95569 0.92593 0.85095 0.83485 0.86460 0.89657 0.90874 0.89599 0.92054 0.91748 0.89510 0.90384 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.83 9.18 71.98 0.66 -5.17 16 2 C 0.09 4.17 2.17 30.59 0.07 4.24 16 3 H 0.06 2.70 6.32 -2.39 -0.02 2.69 16 4 C 0.03 1.56 4.68 29.85 0.14 1.70 16 5 C -0.53 -31.64 8.88 25.60 0.23 -31.41 16 6 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 7 C 0.00 0.29 5.46 84.66 0.46 0.75 16 8 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 9 Si 0.96 45.97 29.54 68.60 2.03 47.99 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 O -0.32 -15.02 9.55 -92.36 -0.88 -15.90 16 14 C 0.11 4.43 6.59 22.44 0.15 4.57 16 15 C -0.22 -7.45 8.25 22.30 0.18 -7.27 16 16 C -0.08 -2.20 9.60 22.35 0.21 -1.98 16 17 C -0.13 -3.28 5.74 -19.83 -0.11 -3.39 16 18 C -0.04 -1.17 5.74 -19.87 -0.11 -1.29 16 19 C -0.19 -6.57 9.55 22.46 0.21 -6.35 16 20 C -0.08 -1.72 5.67 29.74 0.17 -1.55 16 21 C -0.12 -1.84 5.98 30.61 0.18 -1.66 16 22 C -0.12 -1.66 5.98 30.61 0.18 -1.48 16 23 C -0.07 -1.23 5.67 29.74 0.17 -1.06 16 24 H 0.08 2.60 8.14 -2.39 -0.02 2.59 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.07 2.15 6.93 -2.39 -0.02 2.13 16 27 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.13 4.18 5.46 -2.91 -0.02 4.16 16 31 H 0.15 2.99 8.05 -2.91 -0.02 2.96 16 32 H 0.12 4.15 8.05 -2.91 -0.02 4.13 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.03 8.10 -2.38 -0.02 1.01 16 37 H 0.06 0.94 8.10 -2.38 -0.02 0.92 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 Total: -1.00 -68.69 321.27 5.22 -63.47 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.00 Total: 12.73 kcal Atomic # 6 Polarization: -54.14 SS G_CDS: 2.79 Total: -51.35 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.28 Total: -56.95 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.88 Total: -15.90 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -68.69 5.22 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.368 kcal (2) G-P(sol) polarization free energy of solvation -68.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds