Wall clock time and date at job start Mon Mar 30 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47134 * 90.00381 * 3 2 1 5 5 H 1.48507 * 109.47241 * 210.00527 * 3 2 1 6 6 H 1.48502 * 109.47556 * 329.99996 * 3 2 1 7 7 C 1.37878 * 119.99819 * 179.72974 * 2 1 3 8 8 H 1.08000 * 119.99969 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99926 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47338 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47385 * 180.02562 * 10 9 7 12 12 C 1.46812 * 110.99862 * 86.12386 * 11 10 9 13 13 C 1.51712 * 111.15197 * 35.61681 * 12 11 10 14 14 H 1.09001 * 108.59546 * 306.36017 * 13 12 11 15 15 N 1.46896 * 108.60228 * 188.64164 * 13 12 11 16 16 C 1.51769 * 113.89240 * 67.49664 * 13 12 11 17 17 C 1.53168 * 110.63515 * 293.16528 * 16 13 12 18 18 C 1.51474 * 108.23426 * 83.20960 * 17 16 13 19 19 C 1.38150 * 119.74077 * 110.57471 * 18 17 16 20 20 C 1.38379 * 119.65543 * 179.97438 * 19 18 17 21 21 C 1.38310 * 120.14036 * 359.97438 * 20 19 18 22 22 C 1.38133 * 120.19688 * 0.02731 * 21 20 19 23 23 C 1.37781 * 119.81865 * 290.53811 * 18 17 16 24 24 H 0.97010 * 120.00131 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47208 * 300.00615 * 9 7 2 26 26 H 1.09007 * 109.47144 * 60.00068 * 9 7 2 27 27 H 1.08994 * 109.47343 * 300.00447 * 10 9 7 28 28 H 1.09007 * 109.46617 * 60.00150 * 10 9 7 29 29 H 1.08998 * 109.14433 * 156.04943 * 12 11 10 30 30 H 1.09000 * 109.14270 * 275.23912 * 12 11 10 31 31 H 1.00902 * 110.99933 * 179.97438 * 15 13 12 32 32 H 1.00902 * 110.99956 * 303.95271 * 15 13 12 33 33 H 1.08997 * 109.24497 * 53.46098 * 16 13 12 34 34 H 1.09001 * 109.24536 * 172.90368 * 16 13 12 35 35 H 1.09000 * 109.71055 * 202.90111 * 17 16 13 36 36 H 1.09001 * 109.70517 * 323.48283 * 17 16 13 37 37 H 1.07995 * 120.17682 * 359.93631 * 19 18 17 38 38 H 1.08000 * 119.92694 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.89816 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.19574 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7002 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 0.0056 8 1 1.4645 -2.1293 0.0105 9 6 3.5115 -1.1941 0.0050 10 6 4.0215 -2.6365 0.0126 11 7 5.4904 -2.6365 0.0127 12 6 6.0165 -2.5367 1.3797 13 6 5.1388 -3.2913 2.3605 14 1 4.1129 -2.9395 2.2508 15 7 5.5908 -2.9864 3.7245 16 6 5.1572 -4.7968 2.1695 17 6 4.5090 -5.1797 0.8356 18 6 5.5499 -5.0365 -0.2555 19 6 6.0479 -6.1638 -0.8798 20 6 6.9984 -6.0310 -1.8767 21 6 7.4466 -4.7757 -2.2460 22 6 6.9486 -3.6486 -1.6216 23 6 5.9933 -3.7838 -0.6193 24 1 -0.4851 0.8401 0.0004 25 1 3.8745 -0.6846 -0.8875 26 1 3.8752 -0.6759 0.8924 27 1 3.6585 -3.1456 0.9054 28 1 3.6577 -3.1551 -0.8745 29 1 7.0231 -2.9539 1.4067 30 1 6.0568 -1.4873 1.6714 31 1 5.0293 -3.4711 4.4084 32 1 6.5692 -3.2054 3.8386 33 1 6.1890 -5.1479 2.1814 34 1 4.6077 -5.2690 2.9840 35 1 4.1612 -6.2118 0.8788 36 1 3.6682 -4.5167 0.6318 37 1 5.6977 -7.1438 -0.5909 38 1 7.3910 -6.9093 -2.3674 39 1 8.1882 -4.6765 -3.0248 40 1 7.2990 -2.6685 -1.9097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696376653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:49 Heat of formation + Delta-G solvation = 51.854172 kcal Electronic energy + Delta-G solvation = -20146.755790 eV Core-core repulsion = 17347.786868 eV Total energy + Delta-G solvation = -2798.968922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88011 -37.60455 -34.93340 -33.02126 -32.98761 -30.74489 -29.61953 -29.04321 -26.36517 -24.35431 -23.97242 -22.23662 -21.16457 -20.45657 -18.93454 -17.26854 -16.83694 -15.99987 -15.60376 -15.41395 -14.64947 -14.39471 -14.07149 -13.84022 -13.61863 -13.32551 -12.91754 -12.67089 -12.53217 -12.32092 -12.05985 -11.83712 -11.53839 -11.38731 -11.01686 -10.93279 -10.60396 -10.43808 -9.91740 -9.81430 -9.66604 -9.19788 -8.73705 -8.58374 -8.48892 -8.37979 -7.91219 -6.01239 -3.99410 1.45154 1.50791 3.37372 3.44035 3.51193 3.84918 4.17640 4.50922 4.67792 4.68815 4.81637 5.01301 5.08255 5.14561 5.26251 5.34394 5.40821 5.51193 5.61502 5.66242 5.70732 5.86792 5.91098 5.98862 6.06894 6.11550 6.21305 6.29646 6.47262 6.53402 6.60118 6.73229 6.83295 6.97257 7.08708 7.25223 7.35806 7.47373 7.60084 7.80304 7.86943 8.54792 9.01825 9.61871 11.11943 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020461 B = 0.006453 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.098477 B = 4337.799074 C = 4834.606588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.263 1.263 6 H -0.289 1.289 7 C -0.521 4.521 8 H 0.069 0.931 9 C -0.003 4.003 10 C 0.047 3.953 11 N -0.495 5.495 12 C 0.073 3.927 13 C 0.043 3.957 14 H 0.105 0.895 15 N -0.839 5.839 16 C -0.141 4.141 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.098 4.098 23 C 0.099 3.901 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.014 0.986 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.340 0.660 32 H 0.333 0.667 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.007 -11.768 1.768 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.187 1.187 6 H -0.216 1.216 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.078 4.078 11 N -0.215 5.215 12 C -0.054 4.054 13 C -0.069 4.069 14 H 0.123 0.877 15 N -0.367 5.367 16 C -0.180 4.180 17 C -0.148 4.148 18 C -0.109 4.109 19 C -0.133 4.133 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.117 4.117 23 C 0.005 3.995 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.809 -10.425 1.351 18.160 hybrid contribution 0.259 -0.962 0.433 1.086 sum 15.068 -11.386 1.784 18.970 Atomic orbital electron populations 1.69918 1.06324 1.26887 1.51210 1.24965 0.94676 0.99164 0.94403 0.86773 0.80516 0.83456 0.78593 1.20255 1.18714 1.21559 1.21056 0.89395 0.94420 1.51098 0.91258 1.19508 0.96106 0.91439 0.97030 1.22867 0.82732 1.01091 1.01088 1.60598 1.10913 1.34248 1.15712 1.21803 0.96563 1.01455 0.85612 1.21885 1.03015 0.92556 0.89474 0.87746 1.58924 1.07618 1.66272 1.03868 1.22173 1.00845 0.97739 0.97290 1.21408 0.97956 1.03124 0.92306 1.20437 0.98888 0.93607 0.97986 1.20958 0.97717 0.97623 0.96970 1.21082 0.98271 0.97293 0.98214 1.21045 1.00518 0.92447 1.00196 1.21161 0.96476 0.98855 0.95160 1.18880 0.95942 0.88690 0.95950 0.92777 0.95913 0.96742 0.91513 0.91826 0.92252 0.89224 0.84744 0.85561 0.92400 0.91713 0.91239 0.87467 0.86498 0.86528 0.86240 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.23 27.46 -169.99 -4.67 17.56 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.26 -6.47 6.55 56.52 0.37 -6.10 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C 0.00 -0.07 4.28 -27.89 -0.12 -0.19 16 10 C 0.05 0.95 2.85 -3.83 -0.01 0.93 16 11 N -0.49 -8.67 4.64 -172.04 -0.80 -9.47 16 12 C 0.07 1.14 5.23 -4.53 -0.02 1.11 16 13 C 0.04 0.62 2.64 -68.99 -0.18 0.43 16 14 H 0.10 1.83 5.61 -51.93 -0.29 1.54 16 15 N -0.84 -10.41 9.20 -5.76 -0.05 -10.46 16 16 C -0.14 -1.77 5.17 -27.27 -0.14 -1.91 16 17 C -0.11 -1.53 5.44 -27.42 -0.15 -1.68 16 18 C -0.11 -1.55 4.81 -104.44 -0.50 -2.06 16 19 C -0.11 -1.45 9.69 -39.56 -0.38 -1.83 16 20 C -0.13 -1.53 10.05 -39.50 -0.40 -1.93 16 21 C -0.12 -1.51 10.03 -39.59 -0.40 -1.90 16 22 C -0.10 -1.41 9.98 -39.29 -0.39 -1.80 16 23 C 0.10 1.58 4.27 -83.82 -0.36 1.22 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.02 0.57 7.21 -51.93 -0.37 0.20 16 26 H 0.01 0.35 7.52 -51.93 -0.39 -0.04 16 27 H 0.07 1.29 2.62 -51.93 -0.14 1.16 16 28 H 0.06 1.34 7.57 -51.93 -0.39 0.95 16 29 H 0.06 0.85 7.76 -51.93 -0.40 0.45 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.34 3.70 8.90 -39.29 -0.35 3.35 16 32 H 0.33 3.50 8.97 -39.29 -0.35 3.15 16 33 H 0.06 0.71 7.88 -51.93 -0.41 0.30 16 34 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 35 H 0.07 0.84 7.92 -51.93 -0.41 0.43 16 36 H 0.11 1.73 4.21 -51.93 -0.22 1.51 16 37 H 0.12 1.25 7.97 -52.49 -0.42 0.83 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 306.42 15.07 4.62 4.62 Total: -1.00 -30.93 306.42 -9.46 -40.38 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.84 Total: 7.48 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -3.49 Total: -22.85 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.08 Total: -47.20 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.93 -9.46 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696376653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.239 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds