Wall clock time and date at job start Mon Mar 30 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47134 * 90.00381 * 3 2 1 5 5 H 1.48507 * 109.47241 * 210.00527 * 3 2 1 6 6 H 1.48502 * 109.47556 * 329.99996 * 3 2 1 7 7 C 1.37878 * 119.99819 * 179.72974 * 2 1 3 8 8 H 1.08000 * 119.99969 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99926 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47338 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47385 * 180.02562 * 10 9 7 12 12 C 1.46812 * 110.99862 * 86.12386 * 11 10 9 13 13 C 1.51712 * 111.15197 * 35.61681 * 12 11 10 14 14 H 1.09001 * 108.59546 * 306.36017 * 13 12 11 15 15 N 1.46896 * 108.60228 * 188.64164 * 13 12 11 16 16 C 1.51769 * 113.89240 * 67.49664 * 13 12 11 17 17 C 1.53168 * 110.63515 * 293.16528 * 16 13 12 18 18 C 1.51474 * 108.23426 * 83.20960 * 17 16 13 19 19 C 1.38150 * 119.74077 * 110.57471 * 18 17 16 20 20 C 1.38379 * 119.65543 * 179.97438 * 19 18 17 21 21 C 1.38310 * 120.14036 * 359.97438 * 20 19 18 22 22 C 1.38133 * 120.19688 * 0.02731 * 21 20 19 23 23 C 1.37781 * 119.81865 * 290.53811 * 18 17 16 24 24 H 0.97010 * 120.00131 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47208 * 300.00615 * 9 7 2 26 26 H 1.09007 * 109.47144 * 60.00068 * 9 7 2 27 27 H 1.08994 * 109.47343 * 300.00447 * 10 9 7 28 28 H 1.09007 * 109.46617 * 60.00150 * 10 9 7 29 29 H 1.08998 * 109.14433 * 156.04943 * 12 11 10 30 30 H 1.09000 * 109.14270 * 275.23912 * 12 11 10 31 31 H 1.00902 * 110.99933 * 179.97438 * 15 13 12 32 32 H 1.00902 * 110.99956 * 303.95271 * 15 13 12 33 33 H 1.08997 * 109.24497 * 53.46098 * 16 13 12 34 34 H 1.09001 * 109.24536 * 172.90368 * 16 13 12 35 35 H 1.09000 * 109.71055 * 202.90111 * 17 16 13 36 36 H 1.09001 * 109.70517 * 323.48283 * 17 16 13 37 37 H 1.07995 * 120.17682 * 359.93631 * 19 18 17 38 38 H 1.08000 * 119.92694 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.89816 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.19574 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7002 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 0.0056 8 1 1.4645 -2.1293 0.0105 9 6 3.5115 -1.1941 0.0050 10 6 4.0215 -2.6365 0.0126 11 7 5.4904 -2.6365 0.0127 12 6 6.0165 -2.5367 1.3797 13 6 5.1388 -3.2913 2.3605 14 1 4.1129 -2.9395 2.2508 15 7 5.5908 -2.9864 3.7245 16 6 5.1572 -4.7968 2.1695 17 6 4.5090 -5.1797 0.8356 18 6 5.5499 -5.0365 -0.2555 19 6 6.0479 -6.1638 -0.8798 20 6 6.9984 -6.0310 -1.8767 21 6 7.4466 -4.7757 -2.2460 22 6 6.9486 -3.6486 -1.6216 23 6 5.9933 -3.7838 -0.6193 24 1 -0.4851 0.8401 0.0004 25 1 3.8745 -0.6846 -0.8875 26 1 3.8752 -0.6759 0.8924 27 1 3.6585 -3.1456 0.9054 28 1 3.6577 -3.1551 -0.8745 29 1 7.0231 -2.9539 1.4067 30 1 6.0568 -1.4873 1.6714 31 1 5.0293 -3.4711 4.4084 32 1 6.5692 -3.2054 3.8386 33 1 6.1890 -5.1479 2.1814 34 1 4.6077 -5.2690 2.9840 35 1 4.1612 -6.2118 0.8788 36 1 3.6682 -4.5167 0.6318 37 1 5.6977 -7.1438 -0.5909 38 1 7.3910 -6.9093 -2.3674 39 1 8.1882 -4.6765 -3.0248 40 1 7.2990 -2.6685 -1.9097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696376653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:49 Heat of formation + Delta-G solvation = 30.674480 kcal Electronic energy + Delta-G solvation = -20147.674210 eV Core-core repulsion = 17347.786868 eV Total energy + Delta-G solvation = -2799.887342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.05710 -38.68399 -36.24635 -35.02738 -34.07122 -32.54220 -30.75352 -30.15241 -27.92837 -25.79288 -25.15797 -23.44888 -22.76759 -21.52644 -20.31796 -19.03164 -18.35622 -17.22118 -16.81661 -16.57128 -16.09420 -15.80279 -15.49536 -14.98446 -14.84201 -14.69127 -14.38286 -14.29101 -13.78578 -13.58771 -13.55021 -13.17328 -12.83848 -12.59506 -12.55447 -12.31838 -12.02316 -11.86266 -11.65086 -11.49756 -11.45338 -11.18733 -10.75224 -9.76352 -9.62637 -9.46677 -9.23069 -8.30087 -6.33487 0.42055 0.49720 1.35754 1.36784 1.50536 2.36464 2.83565 2.90155 3.05942 3.58550 3.62333 3.76321 3.97074 4.03813 4.13848 4.23580 4.29395 4.35650 4.47968 4.52786 4.62068 4.65439 4.71555 4.81883 4.90709 4.91399 5.02893 5.10159 5.16006 5.25418 5.34687 5.42021 5.52672 5.61322 5.63063 5.70919 5.99528 6.00845 6.21364 6.27534 6.55519 6.60645 6.73031 7.31529 8.86296 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020461 B = 0.006453 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.098477 B = 4337.799074 C = 4834.606588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.253 1.253 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.035 0.965 9 C 0.006 3.994 10 C 0.064 3.936 11 N -0.502 5.502 12 C 0.075 3.925 13 C 0.052 3.948 14 H 0.068 0.932 15 N -0.843 5.843 16 C -0.130 4.130 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.113 4.113 23 C 0.070 3.930 24 H 0.267 0.733 25 H 0.013 0.987 26 H 0.014 0.986 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.350 0.650 32 H 0.346 0.654 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.545 -12.940 1.761 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.177 1.177 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.053 0.947 9 C -0.032 4.032 10 C -0.061 4.061 11 N -0.222 5.222 12 C -0.052 4.052 13 C -0.060 4.060 14 H 0.086 0.914 15 N -0.374 5.374 16 C -0.170 4.170 17 C -0.148 4.148 18 C -0.121 4.121 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.132 4.132 23 C -0.024 4.024 24 H 0.075 0.925 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.369 -11.614 1.353 20.938 hybrid contribution -0.524 -0.711 0.402 0.971 sum 16.845 -12.325 1.755 20.946 Atomic orbital electron populations 1.70051 1.08074 1.28113 1.52616 1.25876 0.95524 1.03148 0.94047 0.85713 0.79409 0.78684 0.79198 1.19164 1.17688 1.20732 1.21352 0.91639 0.93222 1.50490 0.94688 1.19353 0.93337 0.94327 0.96218 1.22510 0.85028 0.97903 1.00696 1.60384 1.08745 1.36093 1.17008 1.21780 0.97520 1.00763 0.85123 1.21613 1.00504 0.93667 0.90256 0.91439 1.58829 1.08764 1.66762 1.03032 1.22075 1.01588 0.96190 0.97106 1.21354 0.96993 1.03441 0.93027 1.20526 0.99244 0.93786 0.98584 1.21269 0.97600 0.97917 0.96765 1.21500 0.97136 0.98241 0.97308 1.21374 1.00456 0.91896 1.00131 1.21302 0.96790 0.99831 0.95278 1.18997 0.97588 0.88552 0.97246 0.92453 0.96904 0.96775 0.90784 0.93658 0.90643 0.90962 0.83628 0.84018 0.91244 0.90183 0.89376 0.90550 0.84268 0.83270 0.83471 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 2 C 0.01 0.67 5.47 84.65 0.46 1.14 16 3 Si 0.95 46.38 27.46 68.60 1.88 48.26 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.25 -11.91 6.55 99.48 0.65 -11.26 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.53 -31.37 9.66 25.60 0.25 -31.13 16 8 H 0.03 2.25 7.99 -2.91 -0.02 2.22 16 9 C 0.01 0.28 4.28 29.84 0.13 0.41 16 10 C 0.06 2.69 2.85 86.30 0.25 2.94 16 11 N -0.50 -17.80 4.64 -698.22 -3.24 -21.04 16 12 C 0.08 2.32 5.23 85.90 0.45 2.77 16 13 C 0.05 1.48 2.64 44.09 0.12 1.60 16 14 H 0.07 2.44 5.61 -2.39 -0.01 2.42 16 15 N -0.84 -19.92 9.20 -172.15 -1.58 -21.51 16 16 C -0.13 -3.08 5.17 30.25 0.16 -2.92 16 17 C -0.11 -2.98 5.44 30.15 0.16 -2.81 16 18 C -0.12 -3.31 4.81 -19.75 -0.09 -3.40 16 19 C -0.12 -2.62 9.69 22.28 0.22 -2.41 16 20 C -0.12 -2.45 10.05 22.32 0.22 -2.22 16 21 C -0.12 -2.58 10.03 22.26 0.22 -2.36 16 22 C -0.11 -3.12 9.98 22.46 0.22 -2.89 16 23 C 0.07 2.18 4.27 37.89 0.16 2.34 16 24 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 25 H 0.01 0.65 7.21 -2.39 -0.02 0.64 16 26 H 0.01 0.70 7.52 -2.38 -0.02 0.68 16 27 H 0.07 3.02 2.62 -2.39 -0.01 3.01 16 28 H 0.04 2.01 7.57 -2.38 -0.02 2.00 16 29 H 0.08 2.07 7.76 -2.39 -0.02 2.05 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.35 7.11 8.90 -89.69 -0.80 6.31 16 32 H 0.35 6.63 8.97 -89.69 -0.80 5.82 16 33 H 0.07 1.51 7.88 -2.39 -0.02 1.49 16 34 H 0.08 1.64 8.06 -2.39 -0.02 1.62 16 35 H 0.09 1.99 7.92 -2.39 -0.02 1.97 16 36 H 0.08 2.54 4.21 -2.39 -0.01 2.53 16 37 H 0.14 2.45 7.97 -2.91 -0.02 2.43 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -68.54 306.42 -0.32 -68.86 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.60 Total: 24.50 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 2.92 Total: -38.95 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -4.52 Total: -102.67 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.88 Total: 48.26 kcal Total: -68.54 -0.32 -68.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696376653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.531 kcal (2) G-P(sol) polarization free energy of solvation -68.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds