Wall clock time and date at job start Mon Mar 30 2020 06:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 115.56343 * 2 1 4 4 C 1.53001 * 109.47155 * 325.68907 * 3 2 1 5 5 N 1.46494 * 109.47167 * 179.97438 * 4 3 2 6 6 C 1.39852 * 120.00272 * 180.02562 * 5 4 3 7 7 C 1.39600 * 119.83689 * 359.72969 * 6 5 4 8 8 C 1.38061 * 120.54889 * 179.71730 * 7 6 5 9 9 C 1.38732 * 120.21839 * 0.55507 * 8 7 6 10 10 N 1.38864 * 120.16427 * 179.74374 * 9 8 7 11 11 C 1.41561 * 119.67742 * 359.72552 * 9 8 7 12 12 C 1.41022 * 120.27208 * 179.97438 * 11 9 8 13 13 H 1.08005 * 119.99980 * 25.57675 * 12 11 9 14 14 C 1.39885 * 120.00501 * 205.57392 * 12 11 9 15 15 N 1.30906 * 119.99792 * 15.34633 * 14 12 11 16 16 Si 1.86799 * 120.00376 * 195.34691 * 14 12 11 17 17 H 1.48503 * 109.46973 * 89.99882 * 16 14 12 18 18 H 1.48499 * 109.47144 * 209.99877 * 16 14 12 19 19 H 1.48503 * 109.46953 * 330.00169 * 16 14 12 20 20 C 1.38008 * 119.84097 * 180.02562 * 6 5 4 21 21 C 1.53003 * 117.49700 * 145.69253 * 2 1 3 22 22 C 1.53003 * 117.49310 * 214.31478 * 2 1 3 23 23 H 1.09001 * 109.47216 * 274.30935 * 1 2 3 24 24 H 1.09000 * 109.47115 * 34.31138 * 1 2 3 25 25 H 1.09001 * 109.47178 * 154.31178 * 1 2 3 26 26 H 1.09001 * 109.46848 * 85.68965 * 3 2 1 27 27 H 1.09003 * 109.46864 * 205.69395 * 3 2 1 28 28 H 1.08996 * 109.47129 * 300.00493 * 4 3 2 29 29 H 1.09010 * 109.46802 * 60.00072 * 4 3 2 30 30 H 0.97005 * 120.00290 * 0.02562 * 5 4 3 31 31 H 1.08001 * 119.72759 * 0.02562 * 7 6 5 32 32 H 1.08004 * 119.89204 * 180.28388 * 8 7 6 33 33 H 0.96995 * 120.00666 * 179.97438 * 10 9 8 34 34 H 0.97007 * 120.00063 * 359.97438 * 10 9 8 35 35 H 0.96997 * 120.00039 * 179.97438 * 15 14 12 36 36 H 1.07994 * 120.11931 * 359.97438 * 20 6 5 37 37 H 1.08997 * 117.50168 * 0.02562 * 21 2 1 38 38 H 1.09003 * 117.49428 * 214.97608 * 21 2 1 39 39 H 1.09008 * 117.49616 * 145.02359 * 22 2 1 40 40 H 1.08996 * 117.50405 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 1.3354 2.3544 -0.8131 5 7 1.9672 3.6761 -0.8126 6 6 1.3662 4.7388 -1.4948 7 6 0.1670 4.5349 -2.1798 8 6 -0.4420 5.5749 -2.8532 9 6 0.1395 6.8344 -2.8654 10 7 -0.4713 7.8784 -3.5476 11 6 1.3585 7.0503 -2.1788 12 6 1.9608 8.3254 -2.1834 13 1 1.3553 9.2082 -2.3271 14 6 3.3425 8.4470 -2.0019 15 7 4.1140 7.3970 -2.1274 16 14 4.0866 10.1077 -1.5803 17 1 4.1290 10.2710 -0.1049 18 1 5.4653 10.1855 -2.1267 19 1 3.2572 11.1869 -2.1741 20 6 1.9646 5.9824 -1.4925 21 6 2.2364 -1.1211 0.7650 22 6 2.2363 -1.1210 -0.7651 23 1 -0.3634 0.0772 1.0248 24 1 -0.3633 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4455 26 1 2.2773 1.7412 1.0248 27 1 3.1824 1.3083 -0.4456 28 1 1.2482 1.9933 -1.8378 29 1 0.3431 2.4262 -0.3675 30 1 2.8025 3.8143 -0.3391 31 1 -0.2906 3.5567 -2.1789 32 1 -1.3720 5.4064 -3.3759 33 1 -0.0630 8.7582 -3.5543 34 1 -1.3066 7.7279 -4.0174 35 1 5.0722 7.4813 -2.0019 36 1 2.8945 6.1354 -0.9652 37 1 1.6112 -1.8588 1.2678 38 1 3.1715 -0.8752 1.2682 39 1 3.1715 -0.8752 -1.2684 40 1 1.6111 -1.8587 -1.2681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698072623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:17 Heat of formation + Delta-G solvation = 37.190265 kcal Electronic energy + Delta-G solvation = -18859.422723 eV Core-core repulsion = 16059.817926 eV Total energy + Delta-G solvation = -2799.604797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.65513 -37.76113 -35.29266 -33.42943 -32.27108 -29.81939 -29.34605 -28.04533 -25.98828 -24.67369 -22.93094 -22.41697 -20.92761 -19.62796 -18.78051 -17.05692 -16.05537 -15.55552 -15.38729 -14.98069 -14.70227 -14.64260 -14.42574 -13.61017 -13.03709 -12.82071 -12.42055 -12.21447 -12.04790 -11.82589 -11.62603 -11.55163 -11.35041 -11.32343 -11.06395 -10.98974 -10.95656 -10.33209 -10.14624 -9.83799 -9.64774 -9.55952 -9.29009 -9.03695 -7.71255 -7.18551 -6.57848 -5.49451 -4.03867 2.93436 3.15078 3.17534 3.34082 3.52178 3.67759 4.05386 4.34793 4.71498 4.79768 4.84935 4.86740 5.14228 5.44258 5.45580 5.52653 5.54805 5.74122 5.78987 5.83578 5.86310 5.93530 6.04906 6.10865 6.17965 6.38718 6.40382 6.44250 6.67589 7.15781 7.19431 7.35828 7.52915 7.74306 7.92373 8.04557 8.16270 8.49434 8.79906 8.94270 8.98080 9.03877 9.29327 9.37725 10.40565 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024709 B = 0.004432 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.939737 B = 6315.471674 C = 7255.965862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.119 4.119 3 C -0.093 4.093 4 C 0.141 3.859 5 N -0.765 5.765 6 C 0.177 3.823 7 C -0.255 4.255 8 C -0.153 4.153 9 C 0.084 3.916 10 N -0.889 5.889 11 C 0.094 3.906 12 C -0.464 4.464 13 H 0.071 0.929 14 C 0.076 3.924 15 N -0.801 5.801 16 Si 0.903 3.097 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.266 1.266 20 C -0.201 4.201 21 C -0.179 4.179 22 C -0.176 4.176 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.386 0.614 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.388 0.612 34 H 0.374 0.626 35 H 0.274 0.726 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 -10.712 3.644 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.119 4.119 3 C -0.131 4.131 4 C 0.016 3.984 5 N -0.400 5.400 6 C 0.078 3.922 7 C -0.279 4.279 8 C -0.177 4.177 9 C -0.017 4.017 10 N -0.432 5.432 11 C 0.089 3.911 12 C -0.495 4.495 13 H 0.089 0.911 14 C -0.140 4.140 15 N -0.428 5.428 16 Si 0.728 3.272 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.190 1.190 20 C -0.226 4.226 21 C -0.216 4.216 22 C -0.213 4.213 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.219 0.781 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.216 0.784 34 H 0.199 0.801 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.494 -10.971 3.645 11.827 hybrid contribution 0.653 0.910 0.100 1.125 sum -1.841 -10.061 3.745 10.892 Atomic orbital electron populations 1.21497 0.92049 1.02445 1.02099 1.21401 0.94931 0.90748 1.04841 1.21283 0.98814 0.92184 1.00770 1.21057 0.95659 0.83264 0.98445 1.44350 1.27436 1.07253 1.60968 1.17524 0.92763 0.87509 0.94363 1.19610 0.99147 0.97581 1.11533 1.19701 0.99850 0.92469 1.05710 1.17857 0.96535 0.87904 0.99364 1.41808 1.27717 1.11422 1.62252 1.16973 0.89754 0.93627 0.90746 1.19143 0.92027 0.93202 1.45121 0.91126 1.25746 0.97428 0.97768 0.93041 1.69883 1.05487 1.30613 1.36856 0.86418 0.78391 0.82927 0.79458 1.19639 1.20640 1.18980 1.20538 1.03375 0.90977 1.07700 1.23025 1.02478 1.01597 0.94491 1.23166 1.02556 1.01411 0.94181 0.92300 0.90815 0.92751 0.91340 0.91494 0.93623 0.93192 0.78087 0.89771 0.89818 0.78364 0.80139 0.91511 0.86308 0.89035 0.88972 0.88861 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.49 37.16 0.35 -0.97 16 2 C -0.12 -1.33 2.47 -154.51 -0.38 -1.71 16 3 C -0.09 -1.20 5.52 -26.73 -0.15 -1.35 16 4 C 0.14 2.27 3.91 -4.04 -0.02 2.25 16 5 N -0.76 -15.08 5.74 -58.64 -0.34 -15.42 16 6 C 0.18 4.22 6.64 -83.77 -0.56 3.67 16 7 C -0.25 -5.93 9.31 -39.14 -0.36 -6.29 16 8 C -0.15 -3.58 9.86 -39.46 -0.39 -3.97 16 9 C 0.08 2.08 6.79 -83.23 -0.56 1.51 16 10 N -0.89 -18.54 8.98 32.75 0.29 -18.25 16 11 C 0.09 2.54 5.58 -106.66 -0.60 1.94 16 12 C -0.46 -12.33 8.50 -37.91 -0.32 -12.66 16 13 H 0.07 1.79 6.67 -52.48 -0.35 1.44 16 14 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 15 N -0.80 -21.20 10.88 55.55 0.60 -20.60 16 16 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 20 C -0.20 -5.33 8.50 -38.75 -0.33 -5.66 16 21 C -0.18 -1.75 9.97 -26.73 -0.27 -2.02 16 22 C -0.18 -1.81 9.82 -26.73 -0.26 -2.07 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.86 5.58 -51.93 -0.29 0.57 16 25 H 0.05 0.51 7.90 -51.93 -0.41 0.10 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.87 7.90 -51.93 -0.41 0.46 16 28 H 0.05 0.77 7.93 -51.93 -0.41 0.36 16 29 H 0.05 0.81 6.25 -51.92 -0.32 0.48 16 30 H 0.39 7.26 8.48 -40.82 -0.35 6.92 16 31 H 0.08 1.78 6.69 -52.49 -0.35 1.43 16 32 H 0.08 1.75 8.06 -52.48 -0.42 1.32 16 33 H 0.39 7.94 7.04 -40.82 -0.29 7.65 16 34 H 0.37 6.59 8.83 -40.82 -0.36 6.23 16 35 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 36 H 0.12 3.26 6.14 -52.49 -0.32 2.93 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.96 8.05 -51.92 -0.42 0.54 16 40 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 LS Contribution 322.49 15.07 4.86 4.86 Total: -1.00 -28.54 322.49 -9.49 -38.03 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -5.95 Total: 22.74 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -3.93 Total: -25.48 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.56 Total: -54.26 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.54 -9.49 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698072623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.221 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds