Wall clock time and date at job start Mon Mar 30 2020 06:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 115.56343 * 2 1 4 4 C 1.53001 * 109.47155 * 325.68907 * 3 2 1 5 5 N 1.46494 * 109.47167 * 179.97438 * 4 3 2 6 6 C 1.39852 * 120.00272 * 180.02562 * 5 4 3 7 7 C 1.39600 * 119.83689 * 359.72969 * 6 5 4 8 8 C 1.38061 * 120.54889 * 179.71730 * 7 6 5 9 9 C 1.38732 * 120.21839 * 0.55507 * 8 7 6 10 10 N 1.38864 * 120.16427 * 179.74374 * 9 8 7 11 11 C 1.41561 * 119.67742 * 359.72552 * 9 8 7 12 12 C 1.41022 * 120.27208 * 179.97438 * 11 9 8 13 13 H 1.08005 * 119.99980 * 25.57675 * 12 11 9 14 14 C 1.39885 * 120.00501 * 205.57392 * 12 11 9 15 15 N 1.30906 * 119.99792 * 15.34633 * 14 12 11 16 16 Si 1.86799 * 120.00376 * 195.34691 * 14 12 11 17 17 H 1.48503 * 109.46973 * 89.99882 * 16 14 12 18 18 H 1.48499 * 109.47144 * 209.99877 * 16 14 12 19 19 H 1.48503 * 109.46953 * 330.00169 * 16 14 12 20 20 C 1.38008 * 119.84097 * 180.02562 * 6 5 4 21 21 C 1.53003 * 117.49700 * 145.69253 * 2 1 3 22 22 C 1.53003 * 117.49310 * 214.31478 * 2 1 3 23 23 H 1.09001 * 109.47216 * 274.30935 * 1 2 3 24 24 H 1.09000 * 109.47115 * 34.31138 * 1 2 3 25 25 H 1.09001 * 109.47178 * 154.31178 * 1 2 3 26 26 H 1.09001 * 109.46848 * 85.68965 * 3 2 1 27 27 H 1.09003 * 109.46864 * 205.69395 * 3 2 1 28 28 H 1.08996 * 109.47129 * 300.00493 * 4 3 2 29 29 H 1.09010 * 109.46802 * 60.00072 * 4 3 2 30 30 H 0.97005 * 120.00290 * 0.02562 * 5 4 3 31 31 H 1.08001 * 119.72759 * 0.02562 * 7 6 5 32 32 H 1.08004 * 119.89204 * 180.28388 * 8 7 6 33 33 H 0.96995 * 120.00666 * 179.97438 * 10 9 8 34 34 H 0.97007 * 120.00063 * 359.97438 * 10 9 8 35 35 H 0.96997 * 120.00039 * 179.97438 * 15 14 12 36 36 H 1.07994 * 120.11931 * 359.97438 * 20 6 5 37 37 H 1.08997 * 117.50168 * 0.02562 * 21 2 1 38 38 H 1.09003 * 117.49428 * 214.97608 * 21 2 1 39 39 H 1.09008 * 117.49616 * 145.02359 * 22 2 1 40 40 H 1.08996 * 117.50405 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 1.3354 2.3544 -0.8131 5 7 1.9672 3.6761 -0.8126 6 6 1.3662 4.7388 -1.4948 7 6 0.1670 4.5349 -2.1798 8 6 -0.4420 5.5749 -2.8532 9 6 0.1395 6.8344 -2.8654 10 7 -0.4713 7.8784 -3.5476 11 6 1.3585 7.0503 -2.1788 12 6 1.9608 8.3254 -2.1834 13 1 1.3553 9.2082 -2.3271 14 6 3.3425 8.4470 -2.0019 15 7 4.1140 7.3970 -2.1274 16 14 4.0866 10.1077 -1.5803 17 1 4.1290 10.2710 -0.1049 18 1 5.4653 10.1855 -2.1267 19 1 3.2572 11.1869 -2.1741 20 6 1.9646 5.9824 -1.4925 21 6 2.2364 -1.1211 0.7650 22 6 2.2363 -1.1210 -0.7651 23 1 -0.3634 0.0772 1.0248 24 1 -0.3633 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4455 26 1 2.2773 1.7412 1.0248 27 1 3.1824 1.3083 -0.4456 28 1 1.2482 1.9933 -1.8378 29 1 0.3431 2.4262 -0.3675 30 1 2.8025 3.8143 -0.3391 31 1 -0.2906 3.5567 -2.1789 32 1 -1.3720 5.4064 -3.3759 33 1 -0.0630 8.7582 -3.5543 34 1 -1.3066 7.7279 -4.0174 35 1 5.0722 7.4813 -2.0019 36 1 2.8945 6.1354 -0.9652 37 1 1.6112 -1.8588 1.2678 38 1 3.1715 -0.8752 1.2682 39 1 3.1715 -0.8752 -1.2684 40 1 1.6111 -1.8587 -1.2681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698072623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:17 Heat of formation + Delta-G solvation = 21.033731 kcal Electronic energy + Delta-G solvation = -18860.123323 eV Core-core repulsion = 16059.817926 eV Total energy + Delta-G solvation = -2800.305396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.90242 -39.25469 -36.87092 -35.32779 -33.84059 -31.31515 -31.11129 -29.04689 -27.67598 -26.50135 -24.29610 -23.25214 -22.71520 -21.42924 -19.74617 -18.89669 -17.78367 -17.24501 -16.79894 -16.39888 -16.12559 -16.08505 -15.75047 -14.74911 -14.54717 -14.18736 -14.05548 -13.74202 -13.58770 -13.14706 -13.05601 -12.97771 -12.81491 -12.70286 -12.57359 -12.21907 -12.12695 -11.97262 -11.71832 -11.34372 -11.16018 -10.93818 -10.93597 -10.44892 -9.39414 -9.13202 -8.48458 -7.29372 -6.00068 1.12969 1.41624 1.52074 1.53128 1.66668 2.27798 2.82055 2.92205 2.99651 3.77012 3.80329 3.87959 3.97464 4.04682 4.16621 4.35118 4.51103 4.59178 4.65041 4.80629 4.86741 4.91250 4.95888 5.04586 5.12127 5.18720 5.23473 5.24972 5.29785 5.35871 5.43682 5.46882 5.68311 5.90063 6.07610 6.18382 6.29314 6.57810 6.98067 7.07128 7.14267 7.28024 7.48437 7.67803 8.51949 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024709 B = 0.004432 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.939737 B = 6315.471674 C = 7255.965862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.083 4.083 4 C 0.143 3.857 5 N -0.763 5.763 6 C 0.172 3.828 7 C -0.259 4.259 8 C -0.158 4.158 9 C 0.069 3.931 10 N -0.879 5.879 11 C 0.060 3.940 12 C -0.492 4.492 13 H 0.074 0.926 14 C 0.032 3.968 15 N -0.834 5.834 16 Si 0.976 3.024 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.258 1.258 20 C -0.227 4.227 21 C -0.167 4.167 22 C -0.177 4.177 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.388 0.612 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.390 0.610 34 H 0.390 0.610 35 H 0.279 0.721 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.188 -11.478 3.895 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.134 4.134 3 C -0.121 4.121 4 C 0.019 3.981 5 N -0.397 5.397 6 C 0.071 3.929 7 C -0.283 4.283 8 C -0.182 4.182 9 C -0.033 4.033 10 N -0.423 5.423 11 C 0.055 3.945 12 C -0.523 4.523 13 H 0.093 0.907 14 C -0.180 4.180 15 N -0.462 5.462 16 Si 0.798 3.202 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.182 1.182 20 C -0.252 4.252 21 C -0.204 4.204 22 C -0.214 4.214 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.221 0.779 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.218 0.782 34 H 0.218 0.782 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.046 -11.761 3.890 12.757 hybrid contribution 0.766 1.041 0.009 1.292 sum -2.280 -10.720 3.899 11.633 Atomic orbital electron populations 1.21481 0.91611 1.02531 1.02330 1.21371 0.95295 0.90013 1.06759 1.21170 0.98218 0.92573 1.00114 1.21181 0.96219 0.82001 0.98672 1.44473 1.27425 1.07758 1.60024 1.17651 0.93034 0.87783 0.94421 1.19922 0.98842 0.98629 1.10898 1.20051 1.00715 0.91975 1.05474 1.18031 0.96316 0.89286 0.99638 1.41679 1.28177 1.10684 1.61767 1.17372 0.91184 0.94204 0.91769 1.19413 0.92942 0.93404 1.46557 0.90747 1.26581 0.97519 1.01534 0.92373 1.69970 1.05908 1.32774 1.37568 0.85300 0.77595 0.78244 0.79052 1.19381 1.19989 1.18151 1.20516 1.03330 0.92443 1.08917 1.23098 1.02442 1.00581 0.94257 1.23240 1.02402 1.00984 0.94772 0.91787 0.92162 0.91452 0.91155 0.91704 0.94307 0.92931 0.77880 0.87634 0.87078 0.78216 0.78192 0.91093 0.88281 0.87615 0.88658 0.89215 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 9.49 71.98 0.68 -1.70 16 2 C -0.13 -2.76 2.47 -52.18 -0.13 -2.89 16 3 C -0.08 -2.06 5.52 30.59 0.17 -1.89 16 4 C 0.14 4.51 3.91 86.38 0.34 4.85 16 5 N -0.76 -30.24 5.74 -339.43 -1.95 -32.18 16 6 C 0.17 8.28 6.64 38.14 0.25 8.53 16 7 C -0.26 -11.87 9.31 22.56 0.21 -11.66 16 8 C -0.16 -7.23 9.86 22.35 0.22 -7.01 16 9 C 0.07 3.42 6.79 38.97 0.26 3.68 16 10 N -0.88 -36.01 8.98 -50.31 -0.45 -36.46 16 11 C 0.06 3.30 5.58 -21.18 -0.12 3.18 16 12 C -0.49 -26.69 8.50 23.35 0.20 -26.49 16 13 H 0.07 3.82 6.67 -2.91 -0.02 3.80 16 14 C 0.03 1.68 5.18 85.23 0.44 2.12 16 15 N -0.83 -45.31 10.88 21.82 0.24 -45.07 16 16 Si 0.98 39.59 29.59 68.60 2.03 41.62 16 17 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 20 C -0.23 -12.41 8.50 22.81 0.19 -12.21 16 21 C -0.17 -2.86 9.97 30.60 0.31 -2.55 16 22 C -0.18 -3.27 9.82 30.60 0.30 -2.97 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 1.32 5.58 -2.39 -0.01 1.31 16 25 H 0.07 1.12 7.90 -2.39 -0.02 1.10 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.63 7.90 -2.39 -0.02 1.61 16 28 H 0.04 1.28 7.93 -2.39 -0.02 1.26 16 29 H 0.05 1.65 6.25 -2.38 -0.01 1.63 16 30 H 0.39 14.87 8.48 -92.70 -0.79 14.09 16 31 H 0.11 4.30 6.69 -2.91 -0.02 4.28 16 32 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.39 15.79 7.04 -92.71 -0.65 15.14 16 34 H 0.39 13.17 8.83 -92.70 -0.82 12.35 16 35 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 36 H 0.10 5.69 6.14 -2.91 -0.02 5.67 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.09 1.72 8.05 -2.38 -0.02 1.70 16 40 H 0.10 1.67 8.05 -2.39 -0.02 1.65 16 Total: -1.00 -61.54 322.49 2.01 -59.53 By element: Atomic # 1 Polarization: 60.78 SS G_CDS: -1.19 Total: 59.59 kcal Atomic # 6 Polarization: -50.35 SS G_CDS: 3.33 Total: -47.02 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -2.16 Total: -113.72 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -61.54 2.01 -59.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698072623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.563 kcal (2) G-P(sol) polarization free energy of solvation -61.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds