Wall clock time and date at job start Mon Mar 30 2020 07:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 H 1.08998 * 109.47301 * 304.07217 * 3 2 1 5 5 C 1.50697 * 109.46864 * 184.07295 * 3 2 1 6 6 H 1.08005 * 120.00190 * 240.00262 * 5 3 2 7 7 C 1.37871 * 120.00087 * 59.99797 * 5 3 2 8 8 N 1.31511 * 120.00052 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00119 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47106 * 119.99948 * 9 7 5 12 12 H 1.48499 * 109.47297 * 240.00545 * 9 7 5 13 13 N 1.46901 * 109.47104 * 64.07230 * 3 2 1 14 14 C 1.46899 * 110.99852 * 204.03636 * 13 3 2 15 15 H 1.08994 * 109.71425 * 324.40358 * 14 13 3 16 16 C 1.53324 * 109.68480 * 203.85372 * 14 13 3 17 17 C 1.52728 * 108.42728 * 170.40431 * 16 14 13 18 18 C 1.50728 * 110.55989 * 51.30759 * 17 16 14 19 19 N 1.32701 * 117.55403 * 162.30952 * 18 17 16 20 20 C 1.31507 * 122.40135 * 179.66578 * 19 18 17 21 21 C 1.38247 * 120.60725 * 0.02562 * 20 19 18 22 22 C 1.38409 * 118.84250 * 0.11530 * 21 20 19 23 23 C 1.37599 * 122.34297 * 342.19197 * 18 17 16 24 24 C 1.50494 * 122.85151 * 0.46681 * 23 18 17 25 25 H 1.08996 * 109.47728 * 294.92177 * 1 2 3 26 26 H 1.09005 * 109.46763 * 54.92087 * 1 2 3 27 27 H 1.08997 * 109.47348 * 174.91593 * 1 2 3 28 28 H 1.08992 * 109.47203 * 239.99887 * 2 1 3 29 29 H 1.08997 * 109.46638 * 119.99641 * 2 1 3 30 30 H 0.97001 * 119.99740 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99981 * 80.08529 * 13 3 2 32 32 H 1.08999 * 109.67870 * 50.66917 * 16 14 13 33 33 H 1.09002 * 109.70242 * 290.15455 * 16 14 13 34 34 H 1.08997 * 109.25454 * 291.02892 * 17 16 14 35 35 H 1.09003 * 109.25520 * 171.58653 * 17 16 14 36 36 H 1.07991 * 119.70240 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.57887 * 180.08939 * 21 20 19 38 38 H 1.08002 * 120.56592 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.26090 * 102.90806 * 24 23 18 40 40 H 1.09004 * 109.26029 * 222.34844 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6184 1.9770 -0.8512 5 6 3.5436 1.4436 -0.1009 6 1 4.1371 1.8924 0.6820 7 6 4.1617 0.8718 -1.1926 8 7 3.4391 0.3257 -2.1461 9 14 6.0255 0.8738 -1.3181 10 1 6.6012 1.5453 -0.1251 11 1 6.5187 -0.5253 -1.3841 12 1 6.4384 1.6027 -2.5442 13 7 1.6323 2.1060 1.2456 14 6 1.5783 3.5637 1.0722 15 1 2.3734 3.8836 0.3988 16 6 1.7449 4.2521 2.4321 17 6 1.9254 5.7502 2.1959 18 6 0.8310 6.2814 1.3061 19 7 0.6317 7.5934 1.2946 20 6 -0.2923 8.1593 0.5493 21 6 -1.1060 7.3939 -0.2651 22 6 -0.9332 6.0207 -0.2807 23 6 0.0545 5.4586 0.5229 24 6 0.2219 3.9633 0.4937 25 1 -0.3634 0.4330 0.9319 26 1 -0.3633 0.5906 -0.8411 27 1 -0.3634 -1.0236 -0.0911 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8740 -0.0763 -2.9144 31 1 2.2455 1.8549 2.0065 32 1 2.6222 3.8525 2.9407 33 1 0.8577 4.0810 3.0417 34 1 2.8911 5.9256 1.7220 35 1 1.8953 6.2711 3.1530 36 1 -0.4171 9.2317 0.5742 37 1 -1.8637 7.8593 -0.8781 38 1 -1.5537 5.3961 -0.9062 39 1 -0.5704 3.5012 1.0826 40 1 0.1536 3.6138 -0.5365 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700291744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:29 Heat of formation + Delta-G solvation = 12.266128 kcal Electronic energy + Delta-G solvation = -19663.019350 eV Core-core repulsion = 16862.333762 eV Total energy + Delta-G solvation = -2800.685588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.43355 -37.32817 -34.91810 -33.11593 -32.09093 -31.02437 -29.79862 -28.19700 -25.92903 -23.90442 -22.89716 -22.43317 -21.88704 -19.45630 -19.21615 -16.70985 -16.40239 -16.21623 -15.51674 -14.78359 -14.34552 -14.11006 -13.77004 -13.38834 -13.24983 -12.93113 -12.77377 -12.56965 -12.23238 -11.97607 -11.66777 -11.40227 -11.32059 -11.13852 -10.77881 -10.69938 -10.50890 -10.27897 -10.05160 -9.59177 -9.51273 -9.44998 -9.23763 -9.04465 -8.55339 -8.38753 -7.29484 -6.01401 -4.14153 1.25095 1.39788 3.24675 3.33557 3.36406 3.89208 4.36247 4.38226 4.79632 4.89500 5.04861 5.16379 5.17429 5.25147 5.34814 5.41766 5.71709 5.78622 5.87141 5.92284 6.08745 6.10570 6.19516 6.26451 6.31703 6.38358 6.48565 6.52388 6.64217 6.69843 6.79762 6.89606 7.11720 7.15486 7.43548 7.58712 7.76444 8.07383 8.12604 8.14765 8.32064 8.64903 8.98897 9.53855 10.98713 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.005597 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.721968 B = 5001.407705 C = 5440.619412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.685 5.685 14 C 0.093 3.907 15 H 0.052 0.948 16 C -0.118 4.118 17 C -0.065 4.065 18 C 0.132 3.868 19 N -0.492 5.492 20 C 0.091 3.909 21 C -0.181 4.181 22 C -0.080 4.080 23 C -0.110 4.110 24 C -0.066 4.066 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.023 0.977 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.330 0.670 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.150 0.850 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.682 9.774 5.040 13.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.314 5.314 14 C -0.017 4.017 15 H 0.070 0.930 16 C -0.156 4.156 17 C -0.103 4.103 18 C -0.003 4.003 19 N -0.201 5.201 20 C -0.069 4.069 21 C -0.201 4.201 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.104 4.104 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.168 0.832 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.101 0.899 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.811 10.095 5.271 13.810 hybrid contribution 1.402 -0.241 -0.963 1.717 sum -6.409 9.854 4.309 12.520 Atomic orbital electron populations 1.21689 0.99030 0.98243 1.00320 1.21498 0.92045 0.99304 1.01681 1.19186 0.92596 0.91074 0.86449 0.94963 1.21908 0.92758 1.37792 1.05871 0.92811 1.24925 0.97903 0.95009 0.95666 1.69883 1.34790 1.38105 1.09563 0.86629 0.86205 0.77744 0.77953 1.19903 1.20955 1.21083 1.60886 1.56658 1.04484 1.09407 1.21269 0.95419 0.90144 0.94895 0.92981 1.21760 1.02322 0.93355 0.98213 1.20346 0.95843 0.95884 0.98254 1.21094 0.95640 0.88349 0.95171 1.67506 1.18864 1.12617 1.21132 1.22544 0.91583 1.00040 0.92711 1.22047 1.01761 0.94719 1.01554 1.21640 0.96677 0.95069 0.97199 1.20692 0.95952 0.97984 0.96562 1.20466 0.99267 0.88300 1.02407 0.93444 0.94532 0.95743 0.89242 0.95098 0.92957 0.85268 0.91034 0.91424 0.89950 0.90160 0.83235 0.85181 0.84976 0.89947 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.73 37.16 0.36 -2.33 16 2 C -0.11 -2.48 5.45 -26.73 -0.15 -2.63 16 3 C 0.21 5.08 1.81 -68.86 -0.12 4.96 16 4 H 0.03 0.85 7.21 -51.93 -0.37 0.48 16 5 C -0.54 -14.25 8.22 -34.44 -0.28 -14.53 16 6 H 0.05 1.40 7.76 -52.48 -0.41 1.00 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.64 11.30 55.43 0.63 -24.02 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.68 -13.46 5.56 -100.90 -0.56 -14.02 16 14 C 0.09 1.65 2.32 -67.66 -0.16 1.50 16 15 H 0.05 1.08 7.58 -51.93 -0.39 0.69 16 16 C -0.12 -1.73 5.36 -26.70 -0.14 -1.87 16 17 C -0.07 -0.93 5.92 -28.01 -0.17 -1.09 16 18 C 0.13 2.05 6.62 -82.44 -0.55 1.51 16 19 N -0.49 -7.49 10.19 -9.51 -0.10 -7.59 16 20 C 0.09 1.14 11.19 -17.69 -0.20 0.95 16 21 C -0.18 -2.12 10.12 -39.52 -0.40 -2.52 16 22 C -0.08 -1.06 9.75 -39.17 -0.38 -1.44 16 23 C -0.11 -1.67 5.74 -104.60 -0.60 -2.27 16 24 C -0.07 -1.08 5.13 -28.10 -0.14 -1.22 16 25 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 2.34 5.97 -51.93 -0.31 2.03 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 31 H 0.33 6.42 7.97 -39.29 -0.31 6.11 16 32 H 0.07 1.01 7.94 -51.93 -0.41 0.59 16 33 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.08 1.33 7.55 -51.93 -0.39 0.94 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -28.10 319.84 -9.63 -37.72 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.37 Total: 6.46 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -3.02 Total: -19.28 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.03 Total: -45.62 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.10 -9.63 -37.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700291744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.990 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds