Wall clock time and date at job start Mon Mar 30 2020 07:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47097 * 2 1 4 4 H 1.08998 * 109.47301 * 304.07217 * 3 2 1 5 5 C 1.50697 * 109.46864 * 184.07295 * 3 2 1 6 6 H 1.08005 * 120.00190 * 240.00262 * 5 3 2 7 7 C 1.37871 * 120.00087 * 59.99797 * 5 3 2 8 8 N 1.31511 * 120.00052 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00119 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47106 * 119.99948 * 9 7 5 12 12 H 1.48499 * 109.47297 * 240.00545 * 9 7 5 13 13 N 1.46901 * 109.47104 * 64.07230 * 3 2 1 14 14 C 1.46899 * 110.99852 * 204.03636 * 13 3 2 15 15 H 1.08994 * 109.71425 * 324.40358 * 14 13 3 16 16 C 1.53324 * 109.68480 * 203.85372 * 14 13 3 17 17 C 1.52728 * 108.42728 * 170.40431 * 16 14 13 18 18 C 1.50728 * 110.55989 * 51.30759 * 17 16 14 19 19 N 1.32701 * 117.55403 * 162.30952 * 18 17 16 20 20 C 1.31507 * 122.40135 * 179.66578 * 19 18 17 21 21 C 1.38247 * 120.60725 * 0.02562 * 20 19 18 22 22 C 1.38409 * 118.84250 * 0.11530 * 21 20 19 23 23 C 1.37599 * 122.34297 * 342.19197 * 18 17 16 24 24 C 1.50494 * 122.85151 * 0.46681 * 23 18 17 25 25 H 1.08996 * 109.47728 * 294.92177 * 1 2 3 26 26 H 1.09005 * 109.46763 * 54.92087 * 1 2 3 27 27 H 1.08997 * 109.47348 * 174.91593 * 1 2 3 28 28 H 1.08992 * 109.47203 * 239.99887 * 2 1 3 29 29 H 1.08997 * 109.46638 * 119.99641 * 2 1 3 30 30 H 0.97001 * 119.99740 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99981 * 80.08529 * 13 3 2 32 32 H 1.08999 * 109.67870 * 50.66917 * 16 14 13 33 33 H 1.09002 * 109.70242 * 290.15455 * 16 14 13 34 34 H 1.08997 * 109.25454 * 291.02892 * 17 16 14 35 35 H 1.09003 * 109.25520 * 171.58653 * 17 16 14 36 36 H 1.07991 * 119.70240 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.57887 * 180.08939 * 21 20 19 38 38 H 1.08002 * 120.56592 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.26090 * 102.90806 * 24 23 18 40 40 H 1.09004 * 109.26029 * 222.34844 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6184 1.9770 -0.8512 5 6 3.5436 1.4436 -0.1009 6 1 4.1371 1.8924 0.6820 7 6 4.1617 0.8718 -1.1926 8 7 3.4391 0.3257 -2.1461 9 14 6.0255 0.8738 -1.3181 10 1 6.6012 1.5453 -0.1251 11 1 6.5187 -0.5253 -1.3841 12 1 6.4384 1.6027 -2.5442 13 7 1.6323 2.1060 1.2456 14 6 1.5783 3.5637 1.0722 15 1 2.3734 3.8836 0.3988 16 6 1.7449 4.2521 2.4321 17 6 1.9254 5.7502 2.1959 18 6 0.8310 6.2814 1.3061 19 7 0.6317 7.5934 1.2946 20 6 -0.2923 8.1593 0.5493 21 6 -1.1060 7.3939 -0.2651 22 6 -0.9332 6.0207 -0.2807 23 6 0.0545 5.4586 0.5229 24 6 0.2219 3.9633 0.4937 25 1 -0.3634 0.4330 0.9319 26 1 -0.3633 0.5906 -0.8411 27 1 -0.3634 -1.0236 -0.0911 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8740 -0.0763 -2.9144 31 1 2.2455 1.8549 2.0065 32 1 2.6222 3.8525 2.9407 33 1 0.8577 4.0810 3.0417 34 1 2.8911 5.9256 1.7220 35 1 1.8953 6.2711 3.1530 36 1 -0.4171 9.2317 0.5742 37 1 -1.8637 7.8593 -0.8781 38 1 -1.5537 5.3961 -0.9062 39 1 -0.5704 3.5012 1.0826 40 1 0.1536 3.6138 -0.5365 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700291744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:28 Heat of formation + Delta-G solvation = -3.656600 kcal Electronic energy + Delta-G solvation = -19663.709812 eV Core-core repulsion = 16862.333762 eV Total energy + Delta-G solvation = -2801.376050 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53060 -38.79633 -36.52228 -34.24211 -33.91022 -32.61535 -30.95230 -29.66428 -27.72518 -25.24211 -24.45804 -23.56431 -23.22614 -21.27775 -20.53527 -18.65331 -17.52111 -17.29127 -16.89822 -16.65328 -15.56559 -15.43642 -15.33635 -14.88484 -14.54094 -14.47367 -14.06589 -13.79281 -13.65714 -13.32609 -13.15830 -13.07806 -13.00825 -12.72835 -12.54988 -12.34421 -11.97984 -11.88462 -11.54923 -11.40962 -11.24291 -10.93128 -10.54833 -10.45015 -10.31851 -9.64216 -9.04691 -8.04937 -6.26387 0.21118 0.35319 1.35693 1.39064 1.48254 2.39720 2.84647 3.14857 3.31178 3.52628 3.84247 3.88100 3.99640 4.11965 4.22073 4.35081 4.51752 4.60203 4.62978 4.65250 4.74491 4.79684 4.84872 4.93895 4.97438 5.00249 5.04723 5.20124 5.23505 5.32434 5.39394 5.45022 5.47059 5.56057 5.67495 5.80451 5.84446 6.14388 6.23837 6.41766 6.85763 7.05451 7.07837 7.45232 8.91500 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.005597 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.721968 B = 5001.407705 C = 5440.619412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.224 3.776 4 H 0.000 1.000 5 C -0.556 4.556 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.673 5.673 14 C 0.094 3.906 15 H 0.015 0.985 16 C -0.106 4.106 17 C -0.061 4.061 18 C 0.113 3.887 19 N -0.514 5.514 20 C 0.087 3.913 21 C -0.171 4.171 22 C -0.088 4.088 23 C -0.131 4.131 24 C -0.054 4.054 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.333 0.667 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.184 0.816 37 H 0.168 0.832 38 H 0.147 0.853 39 H 0.087 0.913 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 11.096 5.804 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.018 0.982 5 C -0.595 4.595 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.302 5.302 14 C -0.016 4.016 15 H 0.033 0.967 16 C -0.145 4.145 17 C -0.099 4.099 18 C -0.021 4.021 19 N -0.223 5.223 20 C -0.072 4.072 21 C -0.190 4.190 22 C -0.114 4.114 23 C -0.134 4.134 24 C -0.092 4.092 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.201 0.799 37 H 0.185 0.815 38 H 0.165 0.835 39 H 0.106 0.894 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.655 11.419 6.052 15.554 hybrid contribution 1.610 -0.563 -1.235 2.106 sum -7.045 10.856 4.817 13.809 Atomic orbital electron populations 1.21542 0.96319 0.99434 1.00716 1.21360 0.94455 0.98406 0.99983 1.18920 0.91185 0.91364 0.86970 0.98249 1.22233 0.94242 1.37296 1.05724 0.93199 1.25628 1.01853 0.94948 0.95556 1.70010 1.36248 1.38826 1.09983 0.85701 0.81519 0.77758 0.77814 1.19424 1.20492 1.21086 1.60830 1.56004 1.05676 1.07677 1.21270 0.95196 0.88914 0.96250 0.96665 1.21656 1.03113 0.93477 0.96206 1.20307 0.95304 0.95409 0.98903 1.21209 0.96169 0.88870 0.95871 1.67536 1.20137 1.12305 1.22351 1.23206 0.90566 1.01760 0.91701 1.22438 1.01791 0.93850 1.00940 1.21929 0.96259 0.96351 0.96838 1.20650 0.97518 0.97051 0.98157 1.20263 0.98339 0.89679 1.00942 0.92155 0.95117 0.93945 0.92345 0.95256 0.93000 0.84995 0.90415 0.90254 0.90821 0.88564 0.79943 0.81484 0.83506 0.89438 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 9.73 71.98 0.70 -4.12 16 2 C -0.10 -4.88 5.45 30.60 0.17 -4.71 16 3 C 0.22 10.93 1.81 44.17 0.08 11.01 16 4 H 0.00 -0.02 7.21 -2.39 -0.02 -0.04 16 5 C -0.56 -29.77 8.22 25.60 0.21 -29.56 16 6 H 0.05 2.65 7.76 -2.91 -0.02 2.62 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -52.02 11.30 21.44 0.24 -51.78 16 9 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 N -0.67 -26.74 5.56 -473.15 -2.63 -29.37 16 14 C 0.09 3.40 2.32 44.95 0.10 3.51 16 15 H 0.02 0.66 7.58 -2.39 -0.02 0.65 16 16 C -0.11 -3.05 5.36 30.61 0.16 -2.89 16 17 C -0.06 -1.71 5.92 29.77 0.18 -1.53 16 18 C 0.11 3.43 6.62 42.29 0.28 3.71 16 19 N -0.51 -14.83 10.19 -184.01 -1.87 -16.70 16 20 C 0.09 1.95 11.19 84.74 0.95 2.90 16 21 C -0.17 -3.48 10.12 22.31 0.23 -3.26 16 22 C -0.09 -2.19 9.75 22.54 0.22 -1.97 16 23 C -0.13 -3.96 5.74 -19.85 -0.11 -4.07 16 24 C -0.05 -1.78 5.13 29.71 0.15 -1.63 16 25 H 0.06 2.19 7.87 -2.39 -0.02 2.18 16 26 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 3.14 5.97 -2.39 -0.01 3.12 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.33 12.93 7.97 -89.69 -0.72 12.22 16 32 H 0.08 2.12 7.94 -2.39 -0.02 2.10 16 33 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 35 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.18 2.74 8.06 -2.92 -0.02 2.71 16 37 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 38 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 39 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.05 1.98 7.55 -2.39 -0.02 1.97 16 Total: -1.00 -61.39 319.84 1.83 -59.56 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.30 Total: 23.88 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 3.76 Total: -31.08 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -4.26 Total: -97.85 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -61.39 1.83 -59.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700291744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.903 kcal (2) G-P(sol) polarization free energy of solvation -61.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds