Wall clock time and date at job start Mon Mar 30 2020 07:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47347 * 2 1 4 4 H 1.08996 * 109.47811 * 304.34253 * 3 2 1 5 5 C 1.50700 * 109.47367 * 184.33978 * 3 2 1 6 6 H 1.07995 * 120.00711 * 239.99866 * 5 3 2 7 7 C 1.37882 * 119.99837 * 60.00249 * 5 3 2 8 8 N 1.31513 * 119.99862 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00229 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46985 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47266 * 120.00258 * 9 7 5 12 12 H 1.48507 * 109.47102 * 240.00112 * 9 7 5 13 13 N 1.46904 * 109.46976 * 64.34741 * 3 2 1 14 14 C 1.46903 * 111.00046 * 207.57740 * 13 3 2 15 15 H 1.09002 * 109.68646 * 33.58688 * 14 13 3 16 16 C 1.53311 * 109.72797 * 154.17598 * 14 13 3 17 17 C 1.52720 * 108.45757 * 189.60535 * 16 14 13 18 18 C 1.50724 * 110.55469 * 308.69459 * 17 16 14 19 19 N 1.32702 * 117.56486 * 197.85952 * 18 17 16 20 20 C 1.31516 * 122.39499 * 180.28511 * 19 18 17 21 21 C 1.38241 * 120.61573 * 0.02562 * 20 19 18 22 22 C 1.38407 * 118.84028 * 359.86845 * 21 20 19 23 23 C 1.37601 * 122.33405 * 17.92182 * 18 17 16 24 24 C 1.50490 * 122.85020 * 359.25288 * 23 18 17 25 25 H 1.08995 * 109.47258 * 174.93344 * 1 2 3 26 26 H 1.08996 * 109.47081 * 294.93741 * 1 2 3 27 27 H 1.08999 * 109.47112 * 54.93267 * 1 2 3 28 28 H 1.09006 * 109.47131 * 239.99984 * 2 1 3 29 29 H 1.09004 * 109.47060 * 120.00560 * 2 1 3 30 30 H 0.97003 * 120.00274 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00402 * 83.62242 * 13 3 2 32 32 H 1.09004 * 109.66601 * 69.90164 * 16 14 13 33 33 H 1.08993 * 109.60883 * 309.28700 * 16 14 13 34 34 H 1.09006 * 109.25221 * 188.42716 * 17 16 14 35 35 H 1.08999 * 109.25384 * 68.96318 * 17 16 14 36 36 H 1.08001 * 119.69226 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.57544 * 179.88233 * 21 20 19 38 38 H 1.07997 * 120.56710 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.26487 * 137.93118 * 24 23 18 40 40 H 1.09003 * 109.25875 * 257.38483 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6146 1.9783 -0.8485 5 6 3.5431 1.4438 -0.1075 6 1 4.1401 1.8913 0.6733 7 6 4.1565 0.8737 -1.2029 8 7 3.4296 0.3292 -2.1542 9 14 6.0196 0.8759 -1.3367 10 1 6.6005 1.5466 -0.1458 11 1 6.5126 -0.5231 -1.4073 12 1 6.4270 1.6068 -2.5636 13 7 1.6379 2.1039 1.2485 14 6 1.5017 3.5539 1.0559 15 1 1.1418 3.7581 0.0474 16 6 0.5145 4.1218 2.0822 17 6 0.2101 5.5713 1.7096 18 6 1.4876 6.3458 1.5099 19 7 1.4140 7.6704 1.5418 20 6 2.4679 8.4389 1.3734 21 6 3.7151 7.8850 1.1521 22 6 3.8361 6.5067 1.1136 23 6 2.6983 5.7268 1.2991 24 6 2.8553 4.2304 1.2661 25 1 -0.3633 -1.0236 -0.0908 26 1 -0.3633 0.4333 0.9318 27 1 -0.3633 0.5904 -0.8411 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8610 -0.0716 -2.9250 31 1 2.2874 1.8975 1.9926 32 1 0.9580 4.0848 3.0772 33 1 -0.4059 3.5383 2.0661 34 1 -0.3695 6.0337 2.5086 35 1 -0.3701 5.5910 0.7871 36 1 2.3581 9.5127 1.4082 37 1 4.5797 8.5167 1.0120 38 1 4.7970 6.0444 0.9423 39 1 3.5245 3.9570 0.4503 40 1 3.2832 3.8929 2.2100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700291745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:31 Heat of formation + Delta-G solvation = 12.517360 kcal Electronic energy + Delta-G solvation = -19743.896330 eV Core-core repulsion = 16943.221636 eV Total energy + Delta-G solvation = -2800.674694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40534 -37.35968 -34.89831 -33.07288 -32.10004 -30.98829 -29.86094 -27.94580 -26.02398 -23.77492 -22.91425 -22.26861 -21.93772 -19.79943 -19.18677 -16.64139 -16.40401 -16.21358 -15.31624 -14.76548 -14.39289 -13.96534 -13.79169 -13.39403 -13.20979 -12.98201 -12.71392 -12.58967 -12.23205 -11.88379 -11.56863 -11.33111 -11.21897 -11.08997 -10.77613 -10.72702 -10.57157 -10.38420 -10.12016 -9.60015 -9.49182 -9.38017 -9.24683 -8.97681 -8.52796 -8.40822 -7.30922 -6.03588 -4.16064 1.28462 1.43637 3.21522 3.30963 3.32105 3.92483 4.34825 4.41128 4.84514 4.96549 5.12961 5.17816 5.18837 5.24453 5.38560 5.49961 5.73690 5.77936 5.87235 5.94219 6.13884 6.16321 6.22154 6.30253 6.35798 6.39573 6.50355 6.62995 6.70386 6.72433 6.78729 6.92491 7.13598 7.17239 7.43481 7.57457 7.75020 8.07476 8.11414 8.15332 8.31110 8.63415 8.97136 9.51364 10.96680 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.006667 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.350157 B = 4198.846508 C = 5438.829293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.682 5.682 14 C 0.100 3.900 15 H 0.073 0.927 16 C -0.109 4.109 17 C -0.065 4.065 18 C 0.130 3.870 19 N -0.493 5.493 20 C 0.089 3.911 21 C -0.181 4.181 22 C -0.080 4.080 23 C -0.108 4.108 24 C -0.107 4.107 25 H 0.023 0.977 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.329 0.671 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.150 0.850 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 10.193 6.500 12.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.309 5.309 14 C -0.011 4.011 15 H 0.091 0.909 16 C -0.147 4.147 17 C -0.104 4.104 18 C -0.005 4.005 19 N -0.202 5.202 20 C -0.070 4.070 21 C -0.201 4.201 22 C -0.106 4.106 23 C -0.110 4.110 24 C -0.146 4.146 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.167 0.833 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.114 0.886 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.480 10.319 6.360 12.612 hybrid contribution 3.158 0.012 -0.490 3.196 sum -0.322 10.331 5.871 11.887 Atomic orbital electron populations 1.21686 0.99015 0.98254 1.00378 1.21501 0.92086 0.99296 1.01630 1.19228 0.92804 0.91194 0.86112 0.95059 1.21926 0.92636 1.37906 1.05726 0.92557 1.24935 0.97737 0.95046 0.95793 1.69884 1.34738 1.38041 1.09496 0.86667 0.86350 0.77831 0.77899 1.19923 1.20949 1.21125 1.60963 1.53929 1.05803 1.10230 1.21409 0.92256 0.89113 0.98320 0.90903 1.21629 1.00692 0.93261 0.99168 1.20368 0.92850 0.94552 1.02594 1.21133 0.94738 0.89435 0.95195 1.67514 1.33237 1.05991 1.13423 1.22530 0.88331 0.99628 0.96504 1.22046 0.99206 0.95715 1.03135 1.21695 0.98927 0.93672 0.96339 1.20733 0.93226 0.98033 0.99037 1.21404 1.01352 0.88633 1.03237 0.95744 0.93425 0.94500 0.89265 0.95103 0.92934 0.85425 0.92276 0.90365 0.90248 0.90086 0.83286 0.85266 0.85036 0.88612 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.73 37.16 0.36 -2.37 16 2 C -0.11 -2.47 5.45 -26.74 -0.15 -2.61 16 3 C 0.21 5.00 1.99 -68.87 -0.14 4.87 16 4 H 0.03 0.82 7.37 -51.93 -0.38 0.44 16 5 C -0.54 -13.69 7.22 -34.44 -0.25 -13.94 16 6 H 0.06 1.39 6.92 -52.49 -0.36 1.03 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.28 11.30 55.43 0.63 -23.66 16 9 Si 0.88 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -13.24 5.59 -100.91 -0.56 -13.81 16 14 C 0.10 1.74 2.50 -67.67 -0.17 1.58 16 15 H 0.07 1.41 7.35 -51.93 -0.38 1.03 16 16 C -0.11 -1.58 5.59 -26.71 -0.15 -1.73 16 17 C -0.07 -0.91 5.92 -28.02 -0.17 -1.08 16 18 C 0.13 2.03 6.62 -82.44 -0.55 1.49 16 19 N -0.49 -7.59 10.19 -9.51 -0.10 -7.68 16 20 C 0.09 1.16 11.19 -17.69 -0.20 0.97 16 21 C -0.18 -2.25 10.12 -39.52 -0.40 -2.65 16 22 C -0.08 -1.15 9.75 -39.17 -0.38 -1.53 16 23 C -0.11 -1.71 5.74 -104.60 -0.60 -2.31 16 24 C -0.11 -1.81 4.38 -28.10 -0.12 -1.93 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.90 7.88 -51.93 -0.41 0.50 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 2.33 5.97 -51.93 -0.31 2.02 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.33 6.34 7.94 -39.29 -0.31 6.03 16 32 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.10 1.86 6.68 -51.93 -0.35 1.51 16 40 H 0.07 1.19 7.93 -51.93 -0.41 0.77 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -27.25 316.88 -9.55 -36.80 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.28 Total: 7.73 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -3.00 Total: -19.58 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.03 Total: -45.15 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.25 -9.55 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700291745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.318 kcal (2) G-P(sol) polarization free energy of solvation -27.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds