Wall clock time and date at job start Mon Mar 30 2020 07:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47347 * 2 1 4 4 H 1.08996 * 109.47811 * 304.34253 * 3 2 1 5 5 C 1.50700 * 109.47367 * 184.33978 * 3 2 1 6 6 H 1.07995 * 120.00711 * 239.99866 * 5 3 2 7 7 C 1.37882 * 119.99837 * 60.00249 * 5 3 2 8 8 N 1.31513 * 119.99862 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00229 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46985 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47266 * 120.00258 * 9 7 5 12 12 H 1.48507 * 109.47102 * 240.00112 * 9 7 5 13 13 N 1.46904 * 109.46976 * 64.34741 * 3 2 1 14 14 C 1.46903 * 111.00046 * 207.57740 * 13 3 2 15 15 H 1.09002 * 109.68646 * 33.58688 * 14 13 3 16 16 C 1.53311 * 109.72797 * 154.17598 * 14 13 3 17 17 C 1.52720 * 108.45757 * 189.60535 * 16 14 13 18 18 C 1.50724 * 110.55469 * 308.69459 * 17 16 14 19 19 N 1.32702 * 117.56486 * 197.85952 * 18 17 16 20 20 C 1.31516 * 122.39499 * 180.28511 * 19 18 17 21 21 C 1.38241 * 120.61573 * 0.02562 * 20 19 18 22 22 C 1.38407 * 118.84028 * 359.86845 * 21 20 19 23 23 C 1.37601 * 122.33405 * 17.92182 * 18 17 16 24 24 C 1.50490 * 122.85020 * 359.25288 * 23 18 17 25 25 H 1.08995 * 109.47258 * 174.93344 * 1 2 3 26 26 H 1.08996 * 109.47081 * 294.93741 * 1 2 3 27 27 H 1.08999 * 109.47112 * 54.93267 * 1 2 3 28 28 H 1.09006 * 109.47131 * 239.99984 * 2 1 3 29 29 H 1.09004 * 109.47060 * 120.00560 * 2 1 3 30 30 H 0.97003 * 120.00274 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00402 * 83.62242 * 13 3 2 32 32 H 1.09004 * 109.66601 * 69.90164 * 16 14 13 33 33 H 1.08993 * 109.60883 * 309.28700 * 16 14 13 34 34 H 1.09006 * 109.25221 * 188.42716 * 17 16 14 35 35 H 1.08999 * 109.25384 * 68.96318 * 17 16 14 36 36 H 1.08001 * 119.69226 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.57544 * 179.88233 * 21 20 19 38 38 H 1.07997 * 120.56710 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.26487 * 137.93118 * 24 23 18 40 40 H 1.09003 * 109.25875 * 257.38483 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6146 1.9783 -0.8485 5 6 3.5431 1.4438 -0.1075 6 1 4.1401 1.8913 0.6733 7 6 4.1565 0.8737 -1.2029 8 7 3.4296 0.3292 -2.1542 9 14 6.0196 0.8759 -1.3367 10 1 6.6005 1.5466 -0.1458 11 1 6.5126 -0.5231 -1.4073 12 1 6.4270 1.6068 -2.5636 13 7 1.6379 2.1039 1.2485 14 6 1.5017 3.5539 1.0559 15 1 1.1418 3.7581 0.0474 16 6 0.5145 4.1218 2.0822 17 6 0.2101 5.5713 1.7096 18 6 1.4876 6.3458 1.5099 19 7 1.4140 7.6704 1.5418 20 6 2.4679 8.4389 1.3734 21 6 3.7151 7.8850 1.1521 22 6 3.8361 6.5067 1.1136 23 6 2.6983 5.7268 1.2991 24 6 2.8553 4.2304 1.2661 25 1 -0.3633 -1.0236 -0.0908 26 1 -0.3633 0.4333 0.9318 27 1 -0.3633 0.5904 -0.8411 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8610 -0.0716 -2.9250 31 1 2.2874 1.8975 1.9926 32 1 0.9580 4.0848 3.0772 33 1 -0.4059 3.5383 2.0661 34 1 -0.3695 6.0337 2.5086 35 1 -0.3701 5.5910 0.7871 36 1 2.3581 9.5127 1.4082 37 1 4.5797 8.5167 1.0120 38 1 4.7970 6.0444 0.9423 39 1 3.5245 3.9570 0.4503 40 1 3.2832 3.8929 2.2100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700291745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:31 Heat of formation + Delta-G solvation = -2.636410 kcal Electronic energy + Delta-G solvation = -19744.553447 eV Core-core repulsion = 16943.221636 eV Total energy + Delta-G solvation = -2801.331811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.54088 -38.83076 -36.48676 -34.24072 -33.89796 -32.58106 -31.02468 -29.43155 -27.79456 -25.05266 -24.53655 -23.44786 -23.28640 -21.49968 -20.65145 -18.52553 -17.54657 -17.32664 -16.89451 -16.33460 -15.71486 -15.40503 -15.24068 -14.93833 -14.50497 -14.31804 -14.22929 -13.78238 -13.74867 -13.19859 -13.16268 -13.01277 -12.90913 -12.66533 -12.49802 -12.28149 -12.02584 -11.93082 -11.66861 -11.44454 -11.13265 -10.89013 -10.57227 -10.43202 -10.30994 -9.65191 -9.00587 -8.02610 -6.22815 0.20539 0.33308 1.36173 1.40100 1.48303 2.40646 2.83782 3.17710 3.36077 3.56639 3.88528 3.89527 4.01652 4.07126 4.18258 4.38056 4.50862 4.57553 4.63146 4.66845 4.73950 4.80444 4.92280 4.95253 5.00332 5.04604 5.04899 5.21642 5.25304 5.39386 5.43691 5.46414 5.49080 5.58607 5.67884 5.80240 5.84816 6.15200 6.24667 6.44409 6.86912 7.06572 7.08072 7.48021 8.94384 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.006667 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.350157 B = 4198.846508 C = 5438.829293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.223 3.777 4 H -0.005 1.005 5 C -0.545 4.545 6 H 0.058 0.942 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.943 3.057 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.287 1.287 13 N -0.672 5.672 14 C 0.101 3.899 15 H 0.046 0.954 16 C -0.095 4.095 17 C -0.061 4.061 18 C 0.115 3.885 19 N -0.511 5.511 20 C 0.088 3.912 21 C -0.172 4.172 22 C -0.093 4.093 23 C -0.131 4.131 24 C -0.094 4.094 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.259 0.741 31 H 0.332 0.668 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.185 0.815 37 H 0.165 0.835 38 H 0.138 0.862 39 H 0.064 0.936 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 11.823 7.851 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.114 3.886 4 H 0.013 0.987 5 C -0.584 4.584 6 H 0.077 0.923 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.770 3.230 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.213 1.213 13 N -0.299 5.299 14 C -0.010 4.010 15 H 0.065 0.935 16 C -0.133 4.133 17 C -0.099 4.099 18 C -0.019 4.019 19 N -0.221 5.221 20 C -0.071 4.071 21 C -0.192 4.192 22 C -0.119 4.119 23 C -0.134 4.134 24 C -0.133 4.133 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.149 0.851 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.202 0.798 37 H 0.182 0.818 38 H 0.156 0.844 39 H 0.082 0.918 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.141 11.958 7.731 14.581 hybrid contribution 3.067 -0.391 -0.914 3.224 sum -0.074 11.566 6.817 13.426 Atomic orbital electron populations 1.21548 0.96518 0.99386 1.00673 1.21372 0.94325 0.98575 0.99976 1.18969 0.91738 0.91321 0.86526 0.98682 1.22229 0.93779 1.36920 1.05488 0.92347 1.25637 1.01576 0.95130 0.95775 1.70021 1.36185 1.39109 1.10006 0.85741 0.81818 0.77619 0.77856 1.19020 1.20923 1.21306 1.60906 1.53458 1.07094 1.08471 1.21409 0.93566 0.87971 0.98060 0.93514 1.21492 0.99880 0.93641 0.98327 1.20350 0.92605 0.93863 1.03110 1.21296 0.94953 0.89998 0.95652 1.67566 1.34438 1.05806 1.14259 1.23197 0.87978 1.01142 0.94784 1.22410 1.00351 0.95099 1.01322 1.21927 0.98773 0.94818 0.96340 1.20681 0.94351 0.97205 1.01137 1.21135 1.00058 0.90023 1.02075 0.93969 0.92104 0.95328 0.92354 0.95180 0.93144 0.85056 0.91376 0.89778 0.88594 0.90224 0.79839 0.81780 0.84375 0.91765 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.73 71.98 0.70 -4.22 16 2 C -0.10 -4.88 5.45 30.59 0.17 -4.71 16 3 C 0.22 10.71 1.99 44.17 0.09 10.80 16 4 H 0.00 -0.26 7.37 -2.39 -0.02 -0.28 16 5 C -0.54 -28.03 7.22 25.60 0.18 -27.84 16 6 H 0.06 2.92 6.92 -2.91 -0.02 2.90 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -51.69 11.30 21.45 0.24 -51.45 16 9 Si 0.94 42.45 29.54 68.60 2.03 44.48 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 13 N -0.67 -26.27 5.59 -473.16 -2.64 -28.91 16 14 C 0.10 3.55 2.50 44.94 0.11 3.67 16 15 H 0.05 1.89 7.35 -2.39 -0.02 1.87 16 16 C -0.09 -2.66 5.59 30.61 0.17 -2.49 16 17 C -0.06 -1.64 5.92 29.76 0.18 -1.46 16 18 C 0.12 3.49 6.62 42.28 0.28 3.77 16 19 N -0.51 -14.74 10.19 -184.00 -1.87 -16.61 16 20 C 0.09 2.03 11.19 84.74 0.95 2.98 16 21 C -0.17 -3.79 10.12 22.31 0.23 -3.56 16 22 C -0.09 -2.52 9.75 22.54 0.22 -2.30 16 23 C -0.13 -4.10 5.74 -19.85 -0.11 -4.22 16 24 C -0.09 -3.21 4.38 29.71 0.13 -3.08 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 2.24 7.88 -2.39 -0.02 2.22 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 3.13 5.97 -2.38 -0.01 3.11 16 29 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.33 12.72 7.94 -89.69 -0.71 12.01 16 32 H 0.07 1.80 8.10 -2.39 -0.02 1.79 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 37 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.06 2.58 6.68 -2.39 -0.02 2.56 16 40 H 0.08 2.49 7.93 -2.39 -0.02 2.47 16 Total: -1.00 -59.35 316.88 1.80 -57.55 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.31 Total: 26.18 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 3.74 Total: -31.25 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.28 Total: -96.97 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -59.35 1.80 -57.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700291745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.918 kcal (2) G-P(sol) polarization free energy of solvation -59.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds