Wall clock time and date at job start Mon Mar 30 2020 07:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47408 * 2 1 4 4 H 1.09002 * 109.46897 * 55.39694 * 3 2 1 5 5 C 1.50700 * 109.47173 * 175.39795 * 3 2 1 6 6 H 1.08004 * 119.99904 * 120.00206 * 5 3 2 7 7 C 1.37874 * 119.99976 * 299.99643 * 5 3 2 8 8 N 1.31517 * 120.00139 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47348 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46651 * 120.00343 * 9 7 5 12 12 H 1.48495 * 109.47343 * 240.00247 * 9 7 5 13 13 N 1.46901 * 109.47072 * 295.39806 * 3 2 1 14 14 C 1.46901 * 110.99808 * 152.29083 * 13 3 2 15 15 H 1.08999 * 109.71800 * 327.45077 * 14 13 3 16 16 C 1.53329 * 109.68166 * 206.90688 * 14 13 3 17 17 C 1.52720 * 108.43080 * 170.41136 * 16 14 13 18 18 C 1.50723 * 110.56657 * 51.29850 * 17 16 14 19 19 N 1.32698 * 117.55760 * 162.31402 * 18 17 16 20 20 C 1.31514 * 122.39992 * 179.66884 * 19 18 17 21 21 C 1.38238 * 120.61123 * 0.03418 * 20 19 18 22 22 C 1.38414 * 118.84232 * 0.06967 * 21 20 19 23 23 C 1.37603 * 122.33839 * 342.19761 * 18 17 16 24 24 C 1.50488 * 122.85424 * 0.46085 * 23 18 17 25 25 H 1.09005 * 109.46986 * 58.28561 * 1 2 3 26 26 H 1.08999 * 109.47354 * 178.28300 * 1 2 3 27 27 H 1.08994 * 109.46949 * 298.29086 * 1 2 3 28 28 H 1.09005 * 109.47339 * 239.99523 * 2 1 3 29 29 H 1.08999 * 109.46964 * 120.00169 * 2 1 3 30 30 H 0.96996 * 120.00235 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00056 * 28.33814 * 13 3 2 32 32 H 1.09001 * 109.67542 * 290.13713 * 16 14 13 33 33 H 1.08999 * 109.67204 * 50.67493 * 16 14 13 34 34 H 1.09004 * 109.25394 * 291.02199 * 17 16 14 35 35 H 1.08993 * 109.25806 * 171.58230 * 17 16 14 36 36 H 1.07996 * 119.69619 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.58198 * 180.09236 * 21 20 19 38 38 H 1.07997 * 120.56906 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.26174 * 222.35527 * 24 23 18 40 40 H 1.08996 * 109.26204 * 102.91414 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6110 1.9795 0.8459 5 6 3.5428 1.4439 0.1140 6 1 4.1430 1.8903 -0.6651 7 6 4.1513 0.8755 1.2129 8 7 3.4204 0.3316 2.1614 9 14 6.0140 0.8767 1.3538 10 1 6.6001 1.5445 0.1640 11 1 6.4170 1.6095 2.5810 12 1 6.5056 -0.5225 1.4289 13 7 1.6433 2.1021 -1.2511 14 6 1.5032 3.5519 -1.0604 15 1 1.1553 3.7577 -0.0481 16 6 0.4996 4.1118 -2.0753 17 6 0.1938 5.5610 -1.7030 18 6 1.4702 6.3420 -1.5227 19 7 1.3894 7.6661 -1.5541 20 6 2.4415 8.4402 -1.4009 21 6 3.6946 7.8928 -1.1983 22 6 3.8234 6.5152 -1.1610 23 6 2.6869 5.7292 -1.3288 24 6 2.8509 4.2338 -1.2899 25 1 -0.3633 0.5403 -0.8743 26 1 -0.3634 -1.0272 -0.0308 27 1 -0.3633 0.4870 0.9049 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8485 -0.0687 2.9343 31 1 0.7924 1.7017 -1.6170 32 1 0.9295 4.0732 -3.0762 33 1 -0.4179 3.5241 -2.0465 34 1 -0.3743 5.5809 -0.7729 35 1 -0.3987 6.0184 -2.4952 36 1 2.3255 9.5134 -1.4337 37 1 4.5581 8.5289 -1.0711 38 1 4.7891 6.0578 -1.0040 39 1 3.5309 3.9675 -0.4807 40 1 3.2694 3.8932 -2.2370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700291746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:33 Heat of formation + Delta-G solvation = 17.356085 kcal Electronic energy + Delta-G solvation = -19733.904273 eV Core-core repulsion = 16933.439402 eV Total energy + Delta-G solvation = -2800.464871 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38129 -37.39405 -34.99338 -33.04540 -32.14838 -30.98333 -29.81986 -27.90743 -26.33074 -23.77528 -22.96106 -22.29330 -21.96672 -19.57312 -19.23434 -16.46984 -16.30474 -16.20240 -15.45096 -14.77929 -14.43138 -14.08591 -13.84728 -13.39587 -13.21092 -13.02394 -12.62692 -12.61875 -12.43749 -11.91476 -11.78047 -11.46136 -11.24340 -11.01983 -10.93307 -10.69651 -10.53969 -10.27571 -9.90622 -9.64263 -9.56000 -9.39403 -9.20191 -8.99012 -8.49044 -8.34550 -7.27272 -5.97683 -4.01012 1.30609 1.46795 3.29101 3.37760 3.41257 3.94768 4.38302 4.43228 4.83082 4.96187 5.10317 5.17757 5.23580 5.31260 5.36109 5.41607 5.76399 5.78410 5.88672 5.95522 6.04648 6.10412 6.14135 6.16392 6.23355 6.30472 6.38698 6.40431 6.59375 6.73636 6.82763 6.86213 6.99165 7.07546 7.18053 7.49940 7.77933 7.92040 8.16513 8.31349 8.40007 8.75216 9.06640 9.63566 11.07870 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018623 B = 0.006647 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.130513 B = 4211.442349 C = 5458.382679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.489 4.489 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.683 5.683 14 C 0.100 3.900 15 H 0.041 0.959 16 C -0.123 4.123 17 C -0.063 4.063 18 C 0.126 3.874 19 N -0.493 5.493 20 C 0.088 3.912 21 C -0.180 4.180 22 C -0.079 4.079 23 C -0.107 4.107 24 C -0.068 4.068 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.099 0.901 30 H 0.258 0.742 31 H 0.321 0.679 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.150 0.850 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 10.024 -6.447 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.110 3.890 4 H 0.021 0.979 5 C -0.528 4.528 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.315 5.315 14 C -0.010 4.010 15 H 0.059 0.941 16 C -0.161 4.161 17 C -0.101 4.101 18 C -0.009 4.009 19 N -0.202 5.202 20 C -0.072 4.072 21 C -0.199 4.199 22 C -0.105 4.105 23 C -0.109 4.109 24 C -0.106 4.106 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.167 0.833 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.113 0.887 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.518 10.334 -6.639 12.777 hybrid contribution 1.182 -0.274 0.924 1.525 sum -2.337 10.060 -5.715 11.803 Atomic orbital electron populations 1.21888 0.99653 0.99533 0.99709 1.21792 0.91185 1.00512 1.03087 1.19249 0.95464 0.89903 0.84351 0.97917 1.21276 0.91146 1.35879 1.04456 0.91778 1.24966 0.97933 0.95775 0.95943 1.69876 1.34615 1.39338 1.09789 0.86562 0.86111 0.77668 0.77801 1.19764 1.21326 1.21151 1.60688 1.36885 1.00867 1.33049 1.21323 0.93416 0.89893 0.96385 0.94135 1.21846 0.99540 0.94354 1.00392 1.20301 0.93135 0.94085 1.02566 1.21046 0.94573 0.89500 0.95787 1.67478 1.33600 1.05791 1.13301 1.22509 0.88325 0.99559 0.96769 1.22051 0.99122 0.95771 1.03000 1.21683 0.99029 0.93549 0.96282 1.20836 0.93146 0.98395 0.98556 1.20564 0.99429 0.86669 1.03969 0.94566 0.94436 0.93914 0.94051 0.88297 0.93178 0.86071 0.91147 0.91376 0.90217 0.90166 0.83310 0.85227 0.84838 0.88685 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.77 37.16 0.36 -2.45 16 2 C -0.13 -2.91 5.35 -26.73 -0.14 -3.05 16 3 C 0.22 5.18 2.04 -68.87 -0.14 5.04 16 4 H 0.00 0.09 7.36 -51.93 -0.38 -0.30 16 5 C -0.49 -12.83 7.53 -34.44 -0.26 -13.09 16 6 H 0.06 1.69 7.05 -52.48 -0.37 1.32 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.03 11.29 55.43 0.63 -24.40 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.68 -13.64 6.17 -100.90 -0.62 -14.26 16 14 C 0.10 1.80 2.52 -67.66 -0.17 1.63 16 15 H 0.04 0.81 7.32 -51.93 -0.38 0.43 16 16 C -0.12 -1.76 5.34 -26.70 -0.14 -1.91 16 17 C -0.06 -0.87 5.92 -28.02 -0.17 -1.04 16 18 C 0.13 1.99 6.62 -82.44 -0.55 1.44 16 19 N -0.49 -7.62 10.19 -9.51 -0.10 -7.72 16 20 C 0.09 1.15 11.19 -17.69 -0.20 0.95 16 21 C -0.18 -2.25 10.12 -39.52 -0.40 -2.65 16 22 C -0.08 -1.15 9.75 -39.16 -0.38 -1.53 16 23 C -0.11 -1.73 5.74 -104.60 -0.60 -2.33 16 24 C -0.07 -1.21 4.60 -28.11 -0.13 -1.34 16 25 H 0.04 0.60 6.37 -51.93 -0.33 0.27 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 2.56 5.96 -51.93 -0.31 2.25 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.32 5.84 5.89 -39.29 -0.23 5.61 16 32 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.09 1.93 6.73 -51.93 -0.35 1.58 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 314.33 15.07 4.74 4.74 Total: -1.00 -28.39 314.33 -9.51 -37.90 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.13 Total: 6.75 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -3.01 Total: -18.97 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.09 Total: -46.38 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.39 -9.51 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700291746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.255 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds