Wall clock time and date at job start Mon Mar 30 2020 07:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47408 * 2 1 4 4 H 1.09002 * 109.46897 * 55.39694 * 3 2 1 5 5 C 1.50700 * 109.47173 * 175.39795 * 3 2 1 6 6 H 1.08004 * 119.99904 * 120.00206 * 5 3 2 7 7 C 1.37874 * 119.99976 * 299.99643 * 5 3 2 8 8 N 1.31517 * 120.00139 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47348 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46651 * 120.00343 * 9 7 5 12 12 H 1.48495 * 109.47343 * 240.00247 * 9 7 5 13 13 N 1.46901 * 109.47072 * 295.39806 * 3 2 1 14 14 C 1.46901 * 110.99808 * 152.29083 * 13 3 2 15 15 H 1.08999 * 109.71800 * 327.45077 * 14 13 3 16 16 C 1.53329 * 109.68166 * 206.90688 * 14 13 3 17 17 C 1.52720 * 108.43080 * 170.41136 * 16 14 13 18 18 C 1.50723 * 110.56657 * 51.29850 * 17 16 14 19 19 N 1.32698 * 117.55760 * 162.31402 * 18 17 16 20 20 C 1.31514 * 122.39992 * 179.66884 * 19 18 17 21 21 C 1.38238 * 120.61123 * 0.03418 * 20 19 18 22 22 C 1.38414 * 118.84232 * 0.06967 * 21 20 19 23 23 C 1.37603 * 122.33839 * 342.19761 * 18 17 16 24 24 C 1.50488 * 122.85424 * 0.46085 * 23 18 17 25 25 H 1.09005 * 109.46986 * 58.28561 * 1 2 3 26 26 H 1.08999 * 109.47354 * 178.28300 * 1 2 3 27 27 H 1.08994 * 109.46949 * 298.29086 * 1 2 3 28 28 H 1.09005 * 109.47339 * 239.99523 * 2 1 3 29 29 H 1.08999 * 109.46964 * 120.00169 * 2 1 3 30 30 H 0.96996 * 120.00235 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00056 * 28.33814 * 13 3 2 32 32 H 1.09001 * 109.67542 * 290.13713 * 16 14 13 33 33 H 1.08999 * 109.67204 * 50.67493 * 16 14 13 34 34 H 1.09004 * 109.25394 * 291.02199 * 17 16 14 35 35 H 1.08993 * 109.25806 * 171.58230 * 17 16 14 36 36 H 1.07996 * 119.69619 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.58198 * 180.09236 * 21 20 19 38 38 H 1.07997 * 120.56906 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.26174 * 222.35527 * 24 23 18 40 40 H 1.08996 * 109.26204 * 102.91414 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6110 1.9795 0.8459 5 6 3.5428 1.4439 0.1140 6 1 4.1430 1.8903 -0.6651 7 6 4.1513 0.8755 1.2129 8 7 3.4204 0.3316 2.1614 9 14 6.0140 0.8767 1.3538 10 1 6.6001 1.5445 0.1640 11 1 6.4170 1.6095 2.5810 12 1 6.5056 -0.5225 1.4289 13 7 1.6433 2.1021 -1.2511 14 6 1.5032 3.5519 -1.0604 15 1 1.1553 3.7577 -0.0481 16 6 0.4996 4.1118 -2.0753 17 6 0.1938 5.5610 -1.7030 18 6 1.4702 6.3420 -1.5227 19 7 1.3894 7.6661 -1.5541 20 6 2.4415 8.4402 -1.4009 21 6 3.6946 7.8928 -1.1983 22 6 3.8234 6.5152 -1.1610 23 6 2.6869 5.7292 -1.3288 24 6 2.8509 4.2338 -1.2899 25 1 -0.3633 0.5403 -0.8743 26 1 -0.3634 -1.0272 -0.0308 27 1 -0.3633 0.4870 0.9049 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8485 -0.0687 2.9343 31 1 0.7924 1.7017 -1.6170 32 1 0.9295 4.0732 -3.0762 33 1 -0.4179 3.5241 -2.0465 34 1 -0.3743 5.5809 -0.7729 35 1 -0.3987 6.0184 -2.4952 36 1 2.3255 9.5134 -1.4337 37 1 4.5581 8.5289 -1.0711 38 1 4.7891 6.0578 -1.0040 39 1 3.5309 3.9675 -0.4807 40 1 3.2694 3.8932 -2.2370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700291746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:33 Heat of formation + Delta-G solvation = 0.725762 kcal Electronic energy + Delta-G solvation = -19734.625418 eV Core-core repulsion = 16933.439402 eV Total energy + Delta-G solvation = -2801.186016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.52988 -38.89034 -36.55962 -34.20412 -34.03854 -32.51280 -31.00416 -29.39055 -28.14816 -25.11327 -24.53986 -23.52221 -23.28751 -21.36735 -20.59795 -18.35178 -17.52155 -17.31993 -16.91220 -16.61441 -15.71283 -15.59672 -15.28616 -14.93025 -14.47524 -14.38412 -14.24981 -13.93585 -13.76133 -13.28023 -13.20687 -12.95840 -12.90142 -12.71230 -12.55448 -12.36206 -12.03544 -11.88673 -11.57536 -11.42587 -11.17181 -10.94492 -10.55043 -10.40218 -10.30643 -9.63406 -9.01045 -8.03853 -6.13664 0.21300 0.34472 1.39039 1.42086 1.52516 2.44604 2.84768 3.21474 3.30728 3.50644 3.85581 3.89502 3.99544 4.12210 4.20060 4.32012 4.51109 4.52762 4.59105 4.60559 4.63482 4.71926 4.75520 4.85583 4.97482 5.01348 5.04881 5.12937 5.24159 5.24717 5.32026 5.38524 5.43369 5.52968 5.64798 5.79937 5.83920 5.95351 6.40727 6.56278 7.00086 7.05379 7.06900 7.54544 8.99856 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018623 B = 0.006647 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.130513 B = 4211.442349 C = 5458.382679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.225 3.775 4 H -0.034 1.034 5 C -0.497 4.497 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.923 5.923 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.283 1.283 13 N -0.680 5.680 14 C 0.100 3.900 15 H 0.015 0.985 16 C -0.110 4.110 17 C -0.059 4.059 18 C 0.112 3.888 19 N -0.510 5.510 20 C 0.088 3.912 21 C -0.171 4.171 22 C -0.092 4.092 23 C -0.132 4.132 24 C -0.056 4.056 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.258 0.742 31 H 0.333 0.667 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.186 0.814 37 H 0.166 0.834 38 H 0.139 0.861 39 H 0.059 0.941 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 11.611 -7.738 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.117 3.883 4 H -0.016 1.016 5 C -0.536 4.536 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.564 5.564 9 Si 0.775 3.225 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.313 5.313 14 C -0.010 4.010 15 H 0.033 0.967 16 C -0.148 4.148 17 C -0.097 4.097 18 C -0.022 4.022 19 N -0.220 5.220 20 C -0.072 4.072 21 C -0.190 4.190 22 C -0.118 4.118 23 C -0.134 4.134 24 C -0.094 4.094 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.152 0.848 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.202 0.798 37 H 0.183 0.817 38 H 0.157 0.843 39 H 0.078 0.922 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.742 11.922 -7.949 14.809 hybrid contribution 1.277 -0.665 1.323 1.955 sum -2.465 11.257 -6.626 13.293 Atomic orbital electron populations 1.21759 0.96297 1.01213 1.00441 1.21622 0.94230 0.99144 1.01216 1.18996 0.94167 0.90490 0.84636 1.01628 1.21535 0.92619 1.35250 1.04177 0.92530 1.25660 1.01857 0.95743 0.95832 1.70012 1.36039 1.40158 1.10197 0.85652 0.81508 0.77604 0.77776 1.19120 1.21210 1.20866 1.60575 1.37728 1.02086 1.30881 1.21335 0.94717 0.88645 0.96352 0.96650 1.21741 0.99067 0.94859 0.99139 1.20309 0.92755 0.93435 1.03229 1.21254 0.94819 0.90110 0.96019 1.67548 1.34742 1.05539 1.14134 1.23197 0.87962 1.01109 0.94883 1.22417 1.00338 0.95057 1.01188 1.21916 0.98827 0.94768 0.96291 1.20746 0.94451 0.97265 1.00969 1.20306 0.98485 0.88474 1.02149 0.92144 0.92395 0.94699 0.94349 0.91609 0.93327 0.84753 0.90585 0.89477 0.90187 0.88282 0.79754 0.81671 0.84311 0.92205 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.77 71.98 0.70 -4.40 16 2 C -0.12 -5.73 5.35 30.59 0.16 -5.56 16 3 C 0.23 11.07 2.04 44.17 0.09 11.16 16 4 H -0.03 -1.89 7.36 -2.39 -0.02 -1.90 16 5 C -0.50 -26.93 7.53 25.60 0.19 -26.74 16 6 H 0.06 3.09 7.05 -2.91 -0.02 3.07 16 7 C 0.01 0.36 5.29 84.65 0.45 0.81 16 8 N -0.92 -53.20 11.29 21.45 0.24 -52.96 16 9 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.68 -27.42 6.17 -473.14 -2.92 -30.34 16 14 C 0.10 3.63 2.52 44.95 0.11 3.75 16 15 H 0.02 0.64 7.32 -2.39 -0.02 0.63 16 16 C -0.11 -3.01 5.34 30.61 0.16 -2.85 16 17 C -0.06 -1.56 5.92 29.76 0.18 -1.39 16 18 C 0.11 3.44 6.62 42.28 0.28 3.72 16 19 N -0.51 -14.76 10.19 -184.01 -1.87 -16.64 16 20 C 0.09 2.04 11.19 84.74 0.95 2.98 16 21 C -0.17 -3.81 10.12 22.31 0.23 -3.58 16 22 C -0.09 -2.58 9.75 22.54 0.22 -2.36 16 23 C -0.13 -4.27 5.74 -19.85 -0.11 -4.39 16 24 C -0.06 -2.05 4.60 29.70 0.14 -1.91 16 25 H 0.06 1.90 6.37 -2.38 -0.02 1.88 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.07 3.52 5.96 -2.39 -0.01 3.50 16 30 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.33 11.79 5.89 -89.69 -0.53 11.26 16 32 H 0.08 2.02 8.10 -2.39 -0.02 2.00 16 33 H 0.09 2.06 7.94 -2.39 -0.02 2.04 16 34 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 38 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 39 H 0.06 2.57 6.73 -2.38 -0.02 2.56 16 40 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -63.06 314.33 1.72 -61.35 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.50 Total: 23.40 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 3.75 Total: -30.77 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -4.55 Total: -99.93 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -63.06 1.72 -61.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700291746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.072 kcal (2) G-P(sol) polarization free energy of solvation -63.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds