Wall clock time and date at job start Mon Mar 30 2020 06:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99997 * 2 1 4 4 H 1.48500 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46931 * 299.99236 * 3 2 1 6 6 H 1.48494 * 109.47409 * 59.99324 * 3 2 1 7 7 C 1.37878 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99745 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47006 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.46942 * 174.86972 * 10 9 7 12 12 C 1.46425 * 111.00298 * 67.40842 * 11 10 9 13 13 C 1.53381 * 108.66580 * 181.16394 * 12 11 10 14 14 C 1.53041 * 107.91862 * 68.26900 * 13 12 11 15 15 C 1.50811 * 109.64721 * 312.68170 * 14 13 12 16 16 C 1.38618 * 118.12174 * 195.49445 * 15 14 13 17 17 C 1.38052 * 120.48625 * 180.28949 * 16 15 14 18 18 C 1.50694 * 120.05566 * 180.02562 * 17 16 15 19 19 N 1.46901 * 109.47325 * 89.99752 * 18 17 16 20 20 C 1.38314 * 119.88528 * 0.02562 * 17 16 15 21 21 C 1.37799 * 119.95533 * 359.85434 * 20 17 16 22 22 C 1.38378 * 122.01306 * 15.53870 * 15 14 13 23 23 H 0.97005 * 120.00116 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46821 * 299.99675 * 9 7 2 25 25 H 1.09002 * 109.47356 * 59.99901 * 9 7 2 26 26 H 1.09004 * 109.46834 * 294.86986 * 10 9 7 27 27 H 1.08997 * 109.47120 * 54.86402 * 10 9 7 28 28 H 1.08999 * 109.60549 * 300.92060 * 12 11 10 29 29 H 1.09003 * 109.60560 * 61.24536 * 12 11 10 30 30 H 1.08997 * 109.77107 * 187.87261 * 13 12 11 31 31 H 1.09001 * 109.77024 * 308.60624 * 13 12 11 32 32 H 1.09000 * 109.44343 * 72.73416 * 14 13 12 33 33 H 1.08995 * 109.44589 * 192.62582 * 14 13 12 34 34 H 1.07997 * 119.75331 * 0.26290 * 16 15 14 35 35 H 1.09004 * 109.47443 * 209.99745 * 18 17 16 36 36 H 1.09009 * 109.47217 * 329.99583 * 18 17 16 37 37 H 1.00902 * 111.00129 * 56.04517 * 19 18 17 38 38 H 1.00898 * 110.99903 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.01908 * 179.87758 * 20 17 16 40 40 H 1.08009 * 119.79054 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5149 -4.9306 0.1244 12 6 0.7140 -5.1941 -1.0727 13 6 -0.0459 -6.5117 -0.8747 14 6 -1.0940 -6.2910 0.2184 15 6 -0.4595 -5.5951 1.3963 16 6 -1.1430 -5.5971 2.6022 17 6 -0.6100 -4.9696 3.7104 18 6 -1.3612 -4.9782 5.0167 19 7 -0.9675 -6.1568 5.8002 20 6 0.6146 -4.3330 3.6195 21 6 1.3010 -4.3290 2.4246 22 6 0.7686 -4.9646 1.3013 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8098 -3.6574 -0.9319 27 1 2.9309 -3.5539 0.8409 28 1 0.0036 -4.3813 -1.2237 29 1 1.3687 -5.2736 -1.9406 30 1 -0.5375 -6.7971 -1.8047 31 1 0.6477 -7.2950 -0.5690 32 1 -1.9033 -5.6753 -0.1739 33 1 -1.4934 -7.2536 0.5377 34 1 -2.0997 -6.0928 2.6752 35 1 -1.1252 -4.0737 5.5775 36 1 -2.4327 -5.0143 4.8196 37 1 0.0314 -6.1801 5.9413 38 1 -1.4581 -6.1856 6.6814 39 1 1.0326 -3.8397 4.4845 40 1 2.2572 -3.8315 2.3568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700794846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:59 Heat of formation + Delta-G solvation = 16.552626 kcal Electronic energy + Delta-G solvation = -19755.903048 eV Core-core repulsion = 16955.403336 eV Total energy + Delta-G solvation = -2800.499712 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22733 -37.17373 -34.59002 -33.94444 -32.74689 -29.88076 -29.72611 -28.81009 -25.41756 -24.86580 -23.38630 -22.38752 -21.49132 -20.28267 -18.60441 -16.61117 -16.40671 -15.90638 -15.70359 -14.79470 -14.52842 -14.41993 -14.16053 -13.72497 -13.31988 -12.98855 -12.83340 -12.75750 -12.41482 -12.18448 -11.99934 -11.73709 -11.26994 -10.98966 -10.97864 -10.83687 -10.68137 -10.41800 -10.17781 -10.05366 -9.71505 -9.17838 -8.97341 -8.68108 -8.39136 -8.17192 -6.96053 -6.03990 -4.07523 1.88804 1.94802 3.27624 3.35417 3.39050 4.06547 4.41375 4.52950 4.82726 4.95424 5.12447 5.23642 5.30495 5.31669 5.39422 5.41479 5.64799 5.74197 5.81131 5.85563 5.99946 6.03132 6.12537 6.15836 6.20142 6.35251 6.42828 6.50984 6.60613 6.74627 6.79827 6.87470 7.04035 7.14713 7.31185 7.43463 7.53659 7.60496 7.71426 7.95469 7.96689 8.35284 8.99182 9.56638 11.06863 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.006526 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.381862 B = 4289.529307 C = 5330.313691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C -0.007 4.007 10 C 0.055 3.945 11 N -0.500 5.500 12 C 0.054 3.946 13 C -0.120 4.120 14 C -0.073 4.073 15 C -0.136 4.136 16 C -0.073 4.073 17 C -0.129 4.129 18 C 0.110 3.890 19 N -0.847 5.847 20 C -0.091 4.091 21 C -0.144 4.144 22 C 0.155 3.845 23 H 0.260 0.740 24 H 0.029 0.971 25 H 0.015 0.985 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.341 0.659 38 H 0.336 0.664 39 H 0.112 0.888 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 -11.966 5.267 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.044 4.044 10 C -0.070 4.070 11 N -0.212 5.212 12 C -0.072 4.072 13 C -0.158 4.158 14 C -0.110 4.110 15 C -0.139 4.139 16 C -0.093 4.093 17 C -0.131 4.131 18 C -0.020 4.020 19 N -0.376 5.376 20 C -0.110 4.110 21 C -0.164 4.164 22 C 0.055 3.945 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.130 0.870 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.968 -12.624 4.583 13.574 hybrid contribution 0.295 2.363 0.648 2.468 sum -1.673 -10.261 5.231 11.639 Atomic orbital electron populations 1.69984 1.06075 1.26500 1.50489 1.25001 0.94798 0.99231 0.95179 0.86554 0.80143 0.83829 0.77603 1.19678 1.21007 1.21011 1.21126 0.92958 0.90748 1.51028 0.92540 1.19692 0.94675 0.92137 0.97944 1.22578 0.97311 0.85505 1.01569 1.58466 1.27398 1.34102 1.01227 1.22119 0.96158 0.97185 0.91766 1.21698 0.97809 0.97736 0.98560 1.20444 0.97708 0.99483 0.93389 1.19403 0.94221 1.04434 0.95891 1.20599 0.98887 0.98229 0.91540 1.19358 0.96388 1.02392 0.94915 1.20566 0.99035 0.90808 0.91604 1.58758 1.11873 1.43639 1.23358 1.20684 0.94497 0.98628 0.97219 1.21117 1.01606 1.01443 0.92255 1.18537 0.90389 0.94411 0.91198 0.93045 0.95322 0.96627 0.91389 0.90952 0.92565 0.90423 0.91127 0.91129 0.91149 0.91219 0.86843 0.95085 0.90784 0.84681 0.85181 0.86999 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C -0.01 -0.17 4.31 -27.88 -0.12 -0.29 16 10 C 0.05 1.14 4.78 -3.82 -0.02 1.12 16 11 N -0.50 -9.43 4.72 -171.29 -0.81 -10.24 16 12 C 0.05 0.92 5.25 -3.89 -0.02 0.90 16 13 C -0.12 -1.68 6.19 -26.51 -0.16 -1.84 16 14 C -0.07 -1.07 5.81 -27.81 -0.16 -1.23 16 15 C -0.14 -2.39 5.74 -104.38 -0.60 -2.99 16 16 C -0.07 -1.20 9.29 -39.51 -0.37 -1.57 16 17 C -0.13 -2.06 5.39 -104.67 -0.56 -2.63 16 18 C 0.11 1.42 6.91 -4.98 -0.03 1.38 16 19 N -0.85 -9.46 9.61 -11.41 -0.11 -9.57 16 20 C -0.09 -1.56 9.69 -39.71 -0.39 -1.94 16 21 C -0.14 -2.74 7.82 -39.23 -0.31 -3.05 16 22 C 0.15 2.97 4.79 -83.85 -0.40 2.57 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.80 6.18 -51.93 -0.32 0.47 16 25 H 0.02 0.43 6.82 -51.93 -0.35 0.07 16 26 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 27 H 0.07 1.48 6.11 -51.93 -0.32 1.16 16 28 H 0.06 1.08 6.55 -51.93 -0.34 0.74 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.03 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.07 0.92 8.09 -51.92 -0.42 0.50 16 37 H 0.34 3.64 8.99 -39.29 -0.35 3.29 16 38 H 0.34 2.92 9.08 -39.29 -0.36 2.57 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.13 2.45 5.91 -52.48 -0.31 2.14 16 LS Contribution 315.81 15.07 4.76 4.76 Total: -1.00 -30.82 315.81 -10.11 -40.93 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.11 Total: 6.42 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -3.55 Total: -22.75 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.18 Total: -45.87 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.82 -10.11 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700794846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.486 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds