Wall clock time and date at job start Mon Mar 30 2020 06:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99997 * 2 1 4 4 H 1.48500 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46931 * 299.99236 * 3 2 1 6 6 H 1.48494 * 109.47409 * 59.99324 * 3 2 1 7 7 C 1.37878 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99745 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47006 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.46942 * 174.86972 * 10 9 7 12 12 C 1.46425 * 111.00298 * 67.40842 * 11 10 9 13 13 C 1.53381 * 108.66580 * 181.16394 * 12 11 10 14 14 C 1.53041 * 107.91862 * 68.26900 * 13 12 11 15 15 C 1.50811 * 109.64721 * 312.68170 * 14 13 12 16 16 C 1.38618 * 118.12174 * 195.49445 * 15 14 13 17 17 C 1.38052 * 120.48625 * 180.28949 * 16 15 14 18 18 C 1.50694 * 120.05566 * 180.02562 * 17 16 15 19 19 N 1.46901 * 109.47325 * 89.99752 * 18 17 16 20 20 C 1.38314 * 119.88528 * 0.02562 * 17 16 15 21 21 C 1.37799 * 119.95533 * 359.85434 * 20 17 16 22 22 C 1.38378 * 122.01306 * 15.53870 * 15 14 13 23 23 H 0.97005 * 120.00116 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46821 * 299.99675 * 9 7 2 25 25 H 1.09002 * 109.47356 * 59.99901 * 9 7 2 26 26 H 1.09004 * 109.46834 * 294.86986 * 10 9 7 27 27 H 1.08997 * 109.47120 * 54.86402 * 10 9 7 28 28 H 1.08999 * 109.60549 * 300.92060 * 12 11 10 29 29 H 1.09003 * 109.60560 * 61.24536 * 12 11 10 30 30 H 1.08997 * 109.77107 * 187.87261 * 13 12 11 31 31 H 1.09001 * 109.77024 * 308.60624 * 13 12 11 32 32 H 1.09000 * 109.44343 * 72.73416 * 14 13 12 33 33 H 1.08995 * 109.44589 * 192.62582 * 14 13 12 34 34 H 1.07997 * 119.75331 * 0.26290 * 16 15 14 35 35 H 1.09004 * 109.47443 * 209.99745 * 18 17 16 36 36 H 1.09009 * 109.47217 * 329.99583 * 18 17 16 37 37 H 1.00902 * 111.00129 * 56.04517 * 19 18 17 38 38 H 1.00898 * 110.99903 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.01908 * 179.87758 * 20 17 16 40 40 H 1.08009 * 119.79054 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5149 -4.9306 0.1244 12 6 0.7140 -5.1941 -1.0727 13 6 -0.0459 -6.5117 -0.8747 14 6 -1.0940 -6.2910 0.2184 15 6 -0.4595 -5.5951 1.3963 16 6 -1.1430 -5.5971 2.6022 17 6 -0.6100 -4.9696 3.7104 18 6 -1.3612 -4.9782 5.0167 19 7 -0.9675 -6.1568 5.8002 20 6 0.6146 -4.3330 3.6195 21 6 1.3010 -4.3290 2.4246 22 6 0.7686 -4.9646 1.3013 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8098 -3.6574 -0.9319 27 1 2.9309 -3.5539 0.8409 28 1 0.0036 -4.3813 -1.2237 29 1 1.3687 -5.2736 -1.9406 30 1 -0.5375 -6.7971 -1.8047 31 1 0.6477 -7.2950 -0.5690 32 1 -1.9033 -5.6753 -0.1739 33 1 -1.4934 -7.2536 0.5377 34 1 -2.0997 -6.0928 2.6752 35 1 -1.1252 -4.0737 5.5775 36 1 -2.4327 -5.0143 4.8196 37 1 0.0314 -6.1801 5.9413 38 1 -1.4581 -6.1856 6.6814 39 1 1.0326 -3.8397 4.4845 40 1 2.2572 -3.8315 2.3568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700794846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:58 Heat of formation + Delta-G solvation = -3.554122 kcal Electronic energy + Delta-G solvation = -19756.774942 eV Core-core repulsion = 16955.403336 eV Total energy + Delta-G solvation = -2801.371606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60633 -38.49874 -36.09529 -35.03716 -34.71252 -31.51113 -31.04911 -30.31325 -27.07621 -26.20381 -24.86037 -23.92052 -22.83562 -21.87293 -19.89311 -18.64708 -17.80640 -17.11970 -17.03698 -16.55264 -15.98983 -15.65322 -15.44220 -15.06639 -14.74136 -14.46313 -14.26152 -14.10995 -14.06610 -13.76903 -13.28711 -13.14610 -12.96215 -12.82930 -12.59570 -12.18239 -12.05825 -12.00808 -11.79601 -11.57691 -11.40389 -11.14584 -10.64521 -10.42620 -9.60796 -9.52309 -8.43478 -8.20692 -6.34463 0.53585 0.58006 1.37132 1.37623 1.50786 2.37387 2.70866 3.10685 3.14128 3.73928 3.84709 3.93036 4.00656 4.06118 4.14828 4.28460 4.39963 4.42561 4.55957 4.65115 4.65548 4.67791 4.78565 4.83388 4.91256 4.97292 5.01211 5.06771 5.24817 5.27205 5.41469 5.44702 5.51664 5.58892 5.75655 5.76770 5.96409 6.10510 6.21659 6.30259 6.51269 6.65327 6.82284 7.34748 8.88892 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.006526 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.381862 B = 4289.529307 C = 5330.313691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.009 3.991 10 C 0.069 3.931 11 N -0.496 5.496 12 C 0.049 3.951 13 C -0.110 4.110 14 C -0.074 4.074 15 C -0.146 4.146 16 C -0.083 4.083 17 C -0.126 4.126 18 C 0.114 3.886 19 N -0.848 5.848 20 C -0.103 4.103 21 C -0.166 4.166 22 C 0.123 3.877 23 H 0.262 0.738 24 H -0.001 1.001 25 H -0.014 1.014 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.024 0.976 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.037 0.963 36 H 0.082 0.918 37 H 0.344 0.656 38 H 0.352 0.648 39 H 0.128 0.872 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 -12.777 5.772 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.081 0.919 9 C -0.029 4.029 10 C -0.056 4.056 11 N -0.209 5.209 12 C -0.077 4.077 13 C -0.148 4.148 14 C -0.111 4.111 15 C -0.149 4.149 16 C -0.102 4.102 17 C -0.128 4.128 18 C -0.016 4.016 19 N -0.379 5.379 20 C -0.122 4.122 21 C -0.187 4.187 22 C 0.024 3.976 23 H 0.071 0.929 24 H 0.018 0.982 25 H 0.005 0.995 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.145 0.855 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.055 -13.460 5.107 14.542 hybrid contribution 0.258 2.586 0.553 2.658 sum -1.797 -10.873 5.660 12.389 Atomic orbital electron populations 1.70124 1.07886 1.27587 1.51578 1.25936 0.95647 1.03260 0.94621 0.85421 0.79228 0.78850 0.77703 1.18359 1.20403 1.20568 1.21570 0.93506 0.91952 1.50637 0.91918 1.19455 0.94749 0.93638 0.95022 1.22291 0.96294 0.85134 1.01916 1.58558 1.28005 1.32339 1.01951 1.22241 0.95943 0.97919 0.91591 1.21687 0.97472 0.95783 0.99828 1.20543 0.97629 1.00402 0.92544 1.19853 0.93635 1.03912 0.97505 1.20961 0.99682 0.98266 0.91274 1.19763 0.95831 1.00785 0.96383 1.20522 0.98984 0.91798 0.90334 1.58690 1.12391 1.42527 1.24333 1.20935 0.95111 0.98998 0.97126 1.21212 1.01692 1.02324 0.93464 1.18779 0.91676 0.95957 0.91172 0.92901 0.98244 0.99523 0.90586 0.90893 0.95735 0.89088 0.88134 0.90583 0.91290 0.88505 0.84579 0.94528 0.89934 0.84340 0.83349 0.85455 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 2 C 0.00 0.19 5.46 84.66 0.46 0.66 16 3 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.01 0.50 4.31 29.85 0.13 0.63 16 10 C 0.07 2.96 4.78 86.30 0.41 3.37 16 11 N -0.50 -19.06 4.72 -695.83 -3.29 -22.35 16 12 C 0.05 1.67 5.25 86.52 0.45 2.13 16 13 C -0.11 -2.88 6.19 30.74 0.19 -2.69 16 14 C -0.07 -2.05 5.81 29.90 0.17 -1.88 16 15 C -0.15 -5.06 5.74 -19.71 -0.11 -5.17 16 16 C -0.08 -2.62 9.29 22.32 0.21 -2.42 16 17 C -0.13 -3.92 5.39 -19.89 -0.11 -4.03 16 18 C 0.11 2.72 6.91 85.55 0.59 3.31 16 19 N -0.85 -17.05 9.61 -190.00 -1.83 -18.87 16 20 C -0.10 -3.53 9.69 22.18 0.22 -3.32 16 21 C -0.17 -6.57 7.82 22.50 0.18 -6.39 16 22 C 0.12 4.84 4.79 38.30 0.18 5.02 16 23 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 24 H 0.00 -0.04 6.18 -2.39 -0.01 -0.06 16 25 H -0.01 -0.79 6.82 -2.39 -0.02 -0.81 16 26 H 0.08 3.09 8.11 -2.38 -0.02 3.07 16 27 H 0.07 3.09 6.11 -2.39 -0.01 3.08 16 28 H 0.02 0.98 6.55 -2.39 -0.02 0.96 16 29 H 0.09 2.77 8.14 -2.39 -0.02 2.76 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.04 0.84 8.09 -2.39 -0.02 0.82 16 36 H 0.08 1.84 8.09 -2.38 -0.02 1.83 16 37 H 0.34 6.70 8.99 -89.69 -0.81 5.89 16 38 H 0.35 5.24 9.08 -89.70 -0.81 4.42 16 39 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.11 4.64 5.91 -2.91 -0.02 4.63 16 Total: -1.00 -67.48 315.81 -0.17 -67.65 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.57 Total: 25.33 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 3.21 Total: -41.15 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -4.83 Total: -98.28 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -67.48 -0.17 -67.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700794846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.092 kcal (2) G-P(sol) polarization free energy of solvation -67.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds