Wall clock time and date at job start Mon Mar 30 2020 06:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 115.56345 * 2 1 4 4 C 1.53071 * 117.51355 * 214.29476 * 2 1 3 5 5 C 1.52996 * 59.98571 * 252.52111 * 4 2 1 6 6 C 1.52991 * 117.49990 * 252.49625 * 5 4 2 7 7 N 1.46504 * 117.49481 * 107.49732 * 5 4 2 8 8 C 1.39856 * 119.99793 * 79.16115 * 7 5 4 9 9 C 1.39602 * 119.84240 * 353.73347 * 8 7 5 10 10 C 1.38050 * 120.55329 * 180.02562 * 9 8 7 11 11 C 1.38734 * 120.22065 * 359.73394 * 10 9 8 12 12 N 1.38860 * 120.16840 * 180.27913 * 11 10 9 13 13 C 1.41563 * 119.67079 * 0.52098 * 11 10 9 14 14 C 1.41027 * 120.26576 * 179.76569 * 13 11 10 15 15 H 1.07998 * 120.00466 * 27.52830 * 14 13 11 16 16 C 1.39893 * 119.99713 * 207.51910 * 14 13 11 17 17 N 1.30904 * 119.99922 * 30.14610 * 16 14 13 18 18 Si 1.86799 * 120.00050 * 210.13616 * 16 14 13 19 19 H 1.48497 * 109.47353 * 270.00564 * 18 16 14 20 20 H 1.48499 * 109.47067 * 30.00309 * 18 16 14 21 21 H 1.48505 * 109.47033 * 150.00319 * 18 16 14 22 22 C 1.38000 * 119.83901 * 173.75279 * 8 7 5 23 23 H 1.09008 * 109.47094 * 274.30894 * 1 2 3 24 24 H 1.09001 * 109.47355 * 34.30562 * 1 2 3 25 25 H 1.08993 * 109.47572 * 154.31293 * 1 2 3 26 26 H 1.08998 * 109.47585 * 205.68972 * 3 2 1 27 27 H 1.09005 * 109.46774 * 325.69196 * 3 2 1 28 28 H 1.08998 * 109.47019 * 85.68580 * 3 2 1 29 29 H 1.09001 * 117.49107 * 145.03382 * 4 2 1 30 30 H 1.09005 * 117.52909 * 359.97438 * 4 2 1 31 31 H 1.09007 * 109.47314 * 271.42876 * 6 5 4 32 32 H 1.08997 * 109.47427 * 31.43321 * 6 5 4 33 33 H 1.08998 * 109.47072 * 151.43368 * 6 5 4 34 34 H 0.96994 * 120.00439 * 259.15989 * 7 5 4 35 35 H 1.08011 * 119.71814 * 0.04261 * 9 8 7 36 36 H 1.07998 * 119.89152 * 180.02562 * 10 9 8 37 37 H 0.97002 * 120.00752 * 186.38546 * 12 11 10 38 38 H 0.97003 * 119.99950 * 6.38611 * 12 11 10 39 39 H 0.96999 * 119.99759 * 5.16636 * 17 16 14 40 40 H 1.08004 * 120.11802 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2371 -1.1216 -0.7649 5 6 2.2365 -1.1210 0.7650 6 6 3.5487 -0.7758 1.4719 7 7 1.3960 -2.1122 1.4414 8 6 1.8346 -3.4346 1.5629 9 6 3.0100 -3.8379 0.9268 10 6 3.4561 -5.1397 1.0364 11 6 2.7414 -6.0620 1.7869 12 7 3.1942 -7.3697 1.9012 13 6 1.5453 -5.6646 2.4315 14 6 0.8062 -6.5930 3.1935 15 1 1.3068 -7.4277 3.6616 16 6 -0.5754 -6.4327 3.3432 17 7 -1.2746 -5.8615 2.3953 18 14 -1.4227 -7.0338 4.8957 19 1 -1.8568 -8.4417 4.7093 20 1 -0.4771 -6.9546 6.0380 21 1 -2.6077 -6.1831 5.1740 22 6 1.1031 -4.3346 2.3108 23 1 -0.3634 0.0772 1.0248 24 1 -0.3634 0.8489 -0.5792 25 1 -0.3634 -0.9260 -0.4454 26 1 3.1824 1.3085 -0.4455 27 1 1.5811 2.0743 -0.5793 28 1 2.2772 1.7413 1.0247 29 1 3.1723 -0.8756 -1.2679 30 1 1.6125 -1.8599 -1.2680 31 1 4.1329 -1.6845 1.6175 32 1 4.1160 -0.0729 0.8619 33 1 3.3320 -0.3241 2.4399 34 1 0.5355 -1.8513 1.8050 35 1 3.5751 -3.1253 0.3442 36 1 4.3671 -5.4401 0.5402 37 1 2.6476 -8.0351 2.3477 38 1 4.0573 -7.6179 1.5346 39 1 -0.8488 -5.6174 1.5586 40 1 0.1943 -4.0191 2.8017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702009477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:20 Heat of formation + Delta-G solvation = 30.827922 kcal Electronic energy + Delta-G solvation = -19630.317471 eV Core-core repulsion = 16830.436782 eV Total energy + Delta-G solvation = -2799.880688 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.26086 -37.61361 -34.27837 -33.60152 -31.22976 -29.87085 -29.02777 -27.85489 -26.76739 -25.87542 -24.62721 -21.21113 -20.84891 -19.72001 -18.29749 -17.34214 -16.03226 -15.47090 -15.24416 -15.04015 -14.37468 -13.97079 -13.71841 -13.26902 -13.17271 -12.54318 -12.53834 -12.26516 -12.08029 -12.05382 -11.85326 -11.72348 -11.52030 -11.43478 -11.08268 -11.00384 -10.64223 -10.34664 -10.31086 -10.03474 -9.52272 -9.24123 -9.13831 -8.71032 -7.80879 -7.40918 -7.09542 -5.66115 -4.07719 2.94758 3.22573 3.27462 3.42232 3.44829 3.85192 4.13428 4.22501 4.75728 4.84738 4.95591 5.13769 5.18628 5.38778 5.65817 5.67413 5.75523 5.86442 5.92650 5.99297 6.03167 6.04138 6.09096 6.15582 6.27223 6.33389 6.48804 6.53729 6.67173 7.02556 7.09352 7.34928 7.57587 7.75171 7.81082 7.91934 8.11039 8.31991 8.64689 8.71044 8.85279 9.01995 9.21277 9.27643 10.23323 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.005961 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.809427 B = 4696.249683 C = 5578.823122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.133 4.133 3 C -0.110 4.110 4 C -0.177 4.177 5 C 0.138 3.862 6 C -0.126 4.126 7 N -0.730 5.730 8 C 0.200 3.800 9 C -0.260 4.260 10 C -0.144 4.144 11 C 0.079 3.921 12 N -0.888 5.888 13 C 0.091 3.909 14 C -0.538 4.538 15 H 0.069 0.931 16 C 0.046 3.954 17 N -0.802 5.802 18 Si 1.059 2.941 19 H -0.281 1.281 20 H -0.278 1.278 21 H -0.276 1.276 22 C -0.257 4.257 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.389 0.611 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.389 0.611 38 H 0.374 0.626 39 H 0.297 0.703 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 8.773 -2.912 10.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.134 4.134 3 C -0.167 4.167 4 C -0.216 4.216 5 C 0.048 3.952 6 C -0.185 4.185 7 N -0.363 5.363 8 C 0.101 3.899 9 C -0.284 4.284 10 C -0.169 4.169 11 C -0.022 4.022 12 N -0.431 5.431 13 C 0.086 3.914 14 C -0.567 4.567 15 H 0.087 0.913 16 C -0.176 4.176 17 N -0.425 5.425 18 Si 0.884 3.116 19 H -0.207 1.207 20 H -0.203 1.203 21 H -0.201 1.201 22 C -0.282 4.282 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.217 0.783 38 H 0.199 0.801 39 H 0.110 0.890 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.801 8.863 -2.252 9.564 hybrid contribution 1.306 -0.233 -0.742 1.520 sum 4.107 8.629 -2.995 10.015 Atomic orbital electron populations 1.21262 0.92195 1.01929 1.01618 1.21884 0.94992 0.91198 1.05285 1.21329 0.99783 0.93994 1.01637 1.23658 1.01746 1.00340 0.95868 1.20312 0.92986 0.92027 0.89911 1.21602 0.95289 1.01782 0.99797 1.43724 1.20964 1.05853 1.65734 1.17346 0.93961 0.82610 0.95936 1.19636 1.00524 0.95976 1.12262 1.19777 0.99887 0.93653 1.03582 1.17793 0.98214 0.85011 1.01175 1.41789 1.22524 1.08834 1.69936 1.17020 0.91167 0.91790 0.91463 1.20053 0.94673 1.11348 1.30632 0.91277 1.26748 0.95108 0.93679 1.02062 1.70435 1.40403 1.26815 1.04859 0.83753 0.76079 0.76880 0.74888 1.20664 1.20292 1.20144 1.20232 1.04528 0.92845 1.10573 0.92489 0.92521 0.92052 0.92471 0.92427 0.92329 0.89201 0.88705 0.90977 0.92449 0.92547 0.77647 0.89023 0.89803 0.78327 0.80128 0.89041 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 8.95 37.16 0.33 -1.13 16 2 C -0.13 -1.77 2.70 -154.47 -0.42 -2.19 16 3 C -0.11 -1.19 8.69 37.16 0.32 -0.86 16 4 C -0.18 -2.64 8.75 -26.70 -0.23 -2.88 16 5 C 0.14 2.20 1.77 -131.82 -0.23 1.96 16 6 C -0.13 -1.87 9.01 37.15 0.33 -1.54 16 7 N -0.73 -14.06 5.30 -46.00 -0.24 -14.30 16 8 C 0.20 4.60 6.54 -83.77 -0.55 4.05 16 9 C -0.26 -5.87 8.34 -39.14 -0.33 -6.20 16 10 C -0.14 -3.33 9.87 -39.47 -0.39 -3.72 16 11 C 0.08 1.93 6.79 -83.23 -0.56 1.36 16 12 N -0.89 -18.55 8.96 32.75 0.29 -18.26 16 13 C 0.09 2.42 5.22 -106.65 -0.56 1.86 16 14 C -0.54 -14.29 8.28 -37.91 -0.31 -14.60 16 15 H 0.07 1.78 6.95 -52.49 -0.36 1.42 16 16 C 0.05 1.17 4.78 -17.33 -0.08 1.09 16 17 N -0.80 -21.67 12.51 55.55 0.69 -20.97 16 18 Si 1.06 22.18 30.02 -169.99 -5.10 17.08 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.26 -6.63 7.99 -38.75 -0.31 -6.94 16 23 H 0.06 0.73 7.86 -51.92 -0.41 0.32 16 24 H 0.06 0.63 7.92 -51.93 -0.41 0.21 16 25 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 26 H 0.06 0.57 7.25 -51.93 -0.38 0.20 16 27 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 30 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 31 H 0.07 1.20 6.36 -51.93 -0.33 0.87 16 32 H 0.06 0.71 6.85 -51.93 -0.36 0.35 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.39 7.32 7.91 -40.82 -0.32 7.00 16 35 H 0.09 1.91 5.55 -52.48 -0.29 1.61 16 36 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.39 8.05 7.14 -40.82 -0.29 7.76 16 38 H 0.37 6.62 8.84 -40.82 -0.36 6.26 16 39 H 0.30 8.34 7.17 -40.82 -0.29 8.04 16 40 H 0.10 2.65 6.85 -52.48 -0.36 2.29 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -28.00 318.73 -8.43 -36.43 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -5.89 Total: 24.94 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -2.99 Total: -29.73 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.74 Total: -53.53 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.10 Total: 17.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.00 -8.43 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702009477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.258 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds