Wall clock time and date at job start Mon Mar 30 2020 06:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 115.56345 * 2 1 4 4 C 1.53071 * 117.51355 * 214.29476 * 2 1 3 5 5 C 1.52996 * 59.98571 * 252.52111 * 4 2 1 6 6 C 1.52991 * 117.49990 * 252.49625 * 5 4 2 7 7 N 1.46504 * 117.49481 * 107.49732 * 5 4 2 8 8 C 1.39856 * 119.99793 * 79.16115 * 7 5 4 9 9 C 1.39602 * 119.84240 * 353.73347 * 8 7 5 10 10 C 1.38050 * 120.55329 * 180.02562 * 9 8 7 11 11 C 1.38734 * 120.22065 * 359.73394 * 10 9 8 12 12 N 1.38860 * 120.16840 * 180.27913 * 11 10 9 13 13 C 1.41563 * 119.67079 * 0.52098 * 11 10 9 14 14 C 1.41027 * 120.26576 * 179.76569 * 13 11 10 15 15 H 1.07998 * 120.00466 * 27.52830 * 14 13 11 16 16 C 1.39893 * 119.99713 * 207.51910 * 14 13 11 17 17 N 1.30904 * 119.99922 * 30.14610 * 16 14 13 18 18 Si 1.86799 * 120.00050 * 210.13616 * 16 14 13 19 19 H 1.48497 * 109.47353 * 270.00564 * 18 16 14 20 20 H 1.48499 * 109.47067 * 30.00309 * 18 16 14 21 21 H 1.48505 * 109.47033 * 150.00319 * 18 16 14 22 22 C 1.38000 * 119.83901 * 173.75279 * 8 7 5 23 23 H 1.09008 * 109.47094 * 274.30894 * 1 2 3 24 24 H 1.09001 * 109.47355 * 34.30562 * 1 2 3 25 25 H 1.08993 * 109.47572 * 154.31293 * 1 2 3 26 26 H 1.08998 * 109.47585 * 205.68972 * 3 2 1 27 27 H 1.09005 * 109.46774 * 325.69196 * 3 2 1 28 28 H 1.08998 * 109.47019 * 85.68580 * 3 2 1 29 29 H 1.09001 * 117.49107 * 145.03382 * 4 2 1 30 30 H 1.09005 * 117.52909 * 359.97438 * 4 2 1 31 31 H 1.09007 * 109.47314 * 271.42876 * 6 5 4 32 32 H 1.08997 * 109.47427 * 31.43321 * 6 5 4 33 33 H 1.08998 * 109.47072 * 151.43368 * 6 5 4 34 34 H 0.96994 * 120.00439 * 259.15989 * 7 5 4 35 35 H 1.08011 * 119.71814 * 0.04261 * 9 8 7 36 36 H 1.07998 * 119.89152 * 180.02562 * 10 9 8 37 37 H 0.97002 * 120.00752 * 186.38546 * 12 11 10 38 38 H 0.97003 * 119.99950 * 6.38611 * 12 11 10 39 39 H 0.96999 * 119.99759 * 5.16636 * 17 16 14 40 40 H 1.08004 * 120.11802 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2371 -1.1216 -0.7649 5 6 2.2365 -1.1210 0.7650 6 6 3.5487 -0.7758 1.4719 7 7 1.3960 -2.1122 1.4414 8 6 1.8346 -3.4346 1.5629 9 6 3.0100 -3.8379 0.9268 10 6 3.4561 -5.1397 1.0364 11 6 2.7414 -6.0620 1.7869 12 7 3.1942 -7.3697 1.9012 13 6 1.5453 -5.6646 2.4315 14 6 0.8062 -6.5930 3.1935 15 1 1.3068 -7.4277 3.6616 16 6 -0.5754 -6.4327 3.3432 17 7 -1.2746 -5.8615 2.3953 18 14 -1.4227 -7.0338 4.8957 19 1 -1.8568 -8.4417 4.7093 20 1 -0.4771 -6.9546 6.0380 21 1 -2.6077 -6.1831 5.1740 22 6 1.1031 -4.3346 2.3108 23 1 -0.3634 0.0772 1.0248 24 1 -0.3634 0.8489 -0.5792 25 1 -0.3634 -0.9260 -0.4454 26 1 3.1824 1.3085 -0.4455 27 1 1.5811 2.0743 -0.5793 28 1 2.2772 1.7413 1.0247 29 1 3.1723 -0.8756 -1.2679 30 1 1.6125 -1.8599 -1.2680 31 1 4.1329 -1.6845 1.6175 32 1 4.1160 -0.0729 0.8619 33 1 3.3320 -0.3241 2.4399 34 1 0.5355 -1.8513 1.8050 35 1 3.5751 -3.1253 0.3442 36 1 4.3671 -5.4401 0.5402 37 1 2.6476 -8.0351 2.3477 38 1 4.0573 -7.6179 1.5346 39 1 -0.8488 -5.6174 1.5586 40 1 0.1943 -4.0191 2.8017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702009477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:19 Heat of formation + Delta-G solvation = 14.659047 kcal Electronic energy + Delta-G solvation = -19631.018606 eV Core-core repulsion = 16830.436782 eV Total energy + Delta-G solvation = -2800.581824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61777 -39.32474 -35.95975 -35.47687 -32.80222 -31.34388 -30.72345 -28.90435 -28.05344 -27.42202 -26.51493 -23.08976 -22.34550 -21.28883 -19.76268 -19.02926 -17.61011 -17.28329 -16.90981 -16.46658 -15.70023 -15.53803 -15.15629 -14.70449 -14.49944 -14.12599 -13.93943 -13.85071 -13.60304 -13.36382 -13.25831 -13.10873 -12.89940 -12.70650 -12.63756 -12.39616 -12.09792 -11.97043 -11.90198 -11.80469 -11.23420 -10.72366 -10.63229 -10.32582 -9.44322 -9.35880 -9.11602 -7.44909 -6.06376 1.06799 1.43491 1.51468 1.69881 1.80359 2.38301 2.60357 2.80613 2.88238 3.69377 3.72150 3.77434 3.85024 4.01677 4.16737 4.46713 4.59957 4.72892 4.78350 4.81359 4.86313 4.89343 4.97354 5.04103 5.04758 5.07563 5.10285 5.23258 5.28892 5.36578 5.45094 5.51153 5.71902 5.82749 5.90463 6.06152 6.20505 6.38205 6.75745 6.97085 7.11011 7.16518 7.38141 7.58722 8.18505 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022011 B = 0.005961 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.809427 B = 4696.249683 C = 5578.823122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.110 4.110 3 C -0.108 4.108 4 C -0.180 4.180 5 C 0.108 3.892 6 C -0.120 4.120 7 N -0.728 5.728 8 C 0.199 3.801 9 C -0.254 4.254 10 C -0.149 4.149 11 C 0.062 3.938 12 N -0.879 5.879 13 C 0.059 3.941 14 C -0.565 4.565 15 H 0.069 0.931 16 C 0.008 3.992 17 N -0.824 5.824 18 Si 1.112 2.888 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.276 1.276 22 C -0.275 4.275 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.387 0.613 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.389 0.611 38 H 0.390 0.610 39 H 0.277 0.723 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 10.281 -3.299 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.111 4.111 3 C -0.165 4.165 4 C -0.219 4.219 5 C 0.019 3.981 6 C -0.178 4.178 7 N -0.359 5.359 8 C 0.098 3.902 9 C -0.278 4.278 10 C -0.174 4.174 11 C -0.040 4.040 12 N -0.423 5.423 13 C 0.053 3.947 14 C -0.594 4.594 15 H 0.087 0.913 16 C -0.207 4.207 17 N -0.448 5.448 18 Si 0.931 3.069 19 H -0.186 1.186 20 H -0.194 1.194 21 H -0.201 1.201 22 C -0.300 4.300 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.217 0.783 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.987 10.384 -2.666 11.438 hybrid contribution 1.046 -0.592 -0.729 1.405 sum 5.033 9.792 -3.395 11.521 Atomic orbital electron populations 1.21299 0.92249 1.01907 1.01796 1.22030 0.95044 0.91964 1.02061 1.21380 1.00480 0.92111 1.02575 1.23661 1.02650 1.00817 0.94742 1.20681 0.93893 0.93064 0.90413 1.21555 0.94485 1.01438 1.00347 1.43789 1.21321 1.05247 1.65558 1.17426 0.93766 0.83934 0.95035 1.19922 1.00081 0.96326 1.11437 1.20139 1.00592 0.93585 1.03056 1.17979 0.97978 0.86614 1.01385 1.41664 1.23242 1.07621 1.69739 1.17368 0.92564 0.92284 0.92450 1.20231 0.95332 1.11972 1.31876 0.91314 1.28109 0.95860 0.92878 1.03899 1.70561 1.40204 1.29254 1.04748 0.83078 0.75156 0.77283 0.71410 1.18639 1.19419 1.20095 1.20197 1.04297 0.93662 1.11856 0.92632 0.90035 0.94201 0.91224 0.90680 0.91696 0.87085 0.91022 0.93151 0.89374 0.92582 0.77868 0.86950 0.87105 0.78329 0.78187 0.91147 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 8.95 71.98 0.64 -2.18 16 2 C -0.11 -2.68 2.70 -52.16 -0.14 -2.82 16 3 C -0.11 -1.90 8.69 71.98 0.63 -1.27 16 4 C -0.18 -5.03 8.75 30.62 0.27 -4.76 16 5 C 0.11 3.29 1.77 3.60 0.01 3.30 16 6 C -0.12 -3.29 9.01 71.98 0.65 -2.64 16 7 N -0.73 -28.26 5.30 -299.44 -1.59 -29.85 16 8 C 0.20 9.31 6.54 38.13 0.25 9.56 16 9 C -0.25 -11.29 8.34 22.55 0.19 -11.10 16 10 C -0.15 -6.75 9.87 22.34 0.22 -6.53 16 11 C 0.06 3.06 6.79 38.97 0.26 3.33 16 12 N -0.88 -36.41 8.96 -50.31 -0.45 -36.86 16 13 C 0.06 3.22 5.22 -21.18 -0.11 3.11 16 14 C -0.56 -30.93 8.28 23.35 0.19 -30.74 16 15 H 0.07 3.64 6.95 -2.91 -0.02 3.62 16 16 C 0.01 0.42 4.78 85.23 0.41 0.83 16 17 N -0.82 -46.40 12.51 21.82 0.27 -46.12 16 18 Si 1.11 45.36 30.02 68.60 2.06 47.42 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 22 C -0.28 -14.78 7.99 22.81 0.18 -14.60 16 23 H 0.05 1.38 7.86 -2.38 -0.02 1.36 16 24 H 0.08 1.59 7.92 -2.39 -0.02 1.57 16 25 H 0.04 1.14 7.90 -2.39 -0.02 1.12 16 26 H 0.07 1.07 7.25 -2.39 -0.02 1.06 16 27 H 0.07 1.10 7.92 -2.38 -0.02 1.08 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.11 2.61 8.05 -2.39 -0.02 2.59 16 30 H 0.07 2.35 8.05 -2.38 -0.02 2.33 16 31 H 0.05 1.59 6.36 -2.38 -0.02 1.58 16 32 H 0.09 1.85 6.85 -2.39 -0.02 1.83 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.39 15.00 7.91 -92.71 -0.73 14.26 16 35 H 0.11 4.48 5.55 -2.91 -0.02 4.46 16 36 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.39 16.16 7.14 -92.71 -0.66 15.50 16 38 H 0.39 13.34 8.84 -92.71 -0.82 12.52 16 39 H 0.28 16.48 7.17 -92.71 -0.66 15.82 16 40 H 0.08 4.30 6.85 -2.91 -0.02 4.28 16 Total: -1.00 -62.32 318.73 2.90 -59.42 By element: Atomic # 1 Polarization: 63.54 SS G_CDS: -1.04 Total: 62.50 kcal Atomic # 6 Polarization: -60.17 SS G_CDS: 3.65 Total: -56.52 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -1.77 Total: -112.83 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.06 Total: 47.42 kcal Total: -62.32 2.90 -59.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702009477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.084 kcal (2) G-P(sol) polarization free energy of solvation -62.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds