Wall clock time and date at job start Mon Mar 30 2020 06:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47172 * 269.99921 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99931 * 3 2 1 6 6 H 1.48502 * 109.47210 * 150.00073 * 3 2 1 7 7 C 1.37870 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00267 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99926 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47198 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.47005 * 180.02562 * 10 9 7 12 12 C 1.46429 * 110.99976 * 283.22118 * 11 10 9 13 13 C 1.53384 * 108.66700 * 287.78925 * 12 11 10 14 14 C 1.53045 * 107.97057 * 291.75074 * 13 12 11 15 15 C 1.50919 * 109.58597 * 47.34961 * 14 13 12 16 16 C 1.38610 * 118.10629 * 164.60088 * 15 14 13 17 17 C 1.38058 * 120.48841 * 179.37545 * 16 15 14 18 18 C 1.38304 * 119.88464 * 0.02562 * 17 16 15 19 19 C 1.37808 * 119.95782 * 0.14781 * 18 17 16 20 20 C 1.50705 * 119.79216 * 179.97438 * 19 18 17 21 21 N 1.46900 * 109.46884 * 264.40001 * 20 19 18 22 22 C 1.38379 * 122.02890 * 344.24781 * 15 14 13 23 23 H 0.97006 * 120.00225 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47130 * 60.00186 * 9 7 2 25 25 H 1.09000 * 109.46934 * 299.99793 * 9 7 2 26 26 H 1.09001 * 109.47149 * 59.99927 * 10 9 7 27 27 H 1.09005 * 109.46682 * 300.00088 * 10 9 7 28 28 H 1.09002 * 109.60354 * 168.03604 * 12 11 10 29 29 H 1.08998 * 109.73945 * 47.62079 * 12 11 10 30 30 H 1.08995 * 109.77368 * 51.38559 * 13 12 11 31 31 H 1.09007 * 109.77060 * 172.12070 * 13 12 11 32 32 H 1.09004 * 109.44234 * 167.44092 * 14 13 12 33 33 H 1.09002 * 109.44443 * 287.32911 * 14 13 12 34 34 H 1.08003 * 119.75600 * 359.35044 * 16 15 14 35 35 H 1.07997 * 120.05310 * 179.97438 * 17 16 15 36 36 H 1.08001 * 120.02186 * 180.17250 * 18 17 16 37 37 H 1.09001 * 109.47044 * 24.39712 * 20 19 18 38 38 H 1.08996 * 109.47627 * 144.39874 * 20 19 18 39 39 H 1.00901 * 111.00072 * 56.04401 * 21 20 19 40 40 H 1.00898 * 111.00083 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4905 -2.6365 0.0022 12 6 6.0163 -2.3233 -1.3281 13 6 5.7785 -3.5287 -2.2462 14 6 6.6743 -4.6726 -1.7652 15 6 6.5469 -4.8200 -0.2687 16 6 7.0146 -5.9871 0.3148 17 6 6.9344 -6.1681 1.6811 18 6 6.3832 -5.1797 2.4760 19 6 5.9128 -4.0181 1.9027 20 6 5.3123 -2.9437 2.7724 21 7 3.8514 -3.0947 2.7987 22 6 5.9897 -3.8300 0.5215 23 1 -0.4851 0.8401 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8751 -0.6804 -0.8889 26 1 3.6586 -3.1502 -0.8892 27 1 3.6578 -3.1505 0.8908 28 1 7.0851 -2.1203 -1.2604 29 1 5.5029 -1.4501 -1.7307 30 1 4.7330 -3.8320 -2.1933 31 1 6.0348 -3.2665 -3.2728 32 1 6.3696 -5.6004 -2.2495 33 1 7.7110 -4.4539 -2.0213 34 1 7.4447 -6.7607 -0.3041 35 1 7.3006 -7.0804 2.1282 36 1 6.3218 -5.3178 3.5454 37 1 5.7052 -3.0343 3.7851 38 1 5.5692 -1.9642 2.3693 39 1 3.5888 -4.0185 3.1080 40 1 3.4249 -2.3856 3.3761 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702865759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:01 Heat of formation + Delta-G solvation = 29.589822 kcal Electronic energy + Delta-G solvation = -20175.977255 eV Core-core repulsion = 17376.042879 eV Total energy + Delta-G solvation = -2799.934377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45177 -36.90204 -35.28225 -33.14420 -32.37384 -30.52204 -30.07416 -28.80068 -25.35716 -24.66728 -23.48008 -22.95719 -20.76281 -20.11298 -18.76711 -16.96449 -16.22773 -16.18791 -15.37917 -15.00177 -14.39933 -14.11682 -14.06432 -13.89006 -13.56418 -13.42521 -12.70597 -12.61715 -12.44345 -12.36577 -12.06050 -11.72863 -11.45710 -11.16105 -10.96509 -10.79852 -10.51258 -10.47737 -9.95729 -9.79450 -9.62812 -9.06898 -8.72396 -8.48521 -8.42423 -7.93368 -7.36639 -5.93117 -3.88186 1.53699 1.63768 3.37482 3.44941 3.51349 3.88076 4.39387 4.55318 4.87174 4.92657 5.01441 5.16616 5.18189 5.22694 5.41931 5.44700 5.47837 5.60371 5.70024 5.74031 5.83465 5.98347 6.04927 6.13511 6.17072 6.27680 6.33984 6.53046 6.58733 6.67706 6.71759 6.88558 7.04796 7.13508 7.40094 7.46043 7.63298 7.79758 7.85071 7.97764 8.03561 8.68865 9.14142 9.70763 11.20681 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.006586 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.340952 B = 4250.690709 C = 4905.348007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.065 3.935 3 Si 0.877 3.123 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.501 4.501 8 H 0.070 0.930 9 C 0.005 3.995 10 C 0.048 3.952 11 N -0.498 5.498 12 C 0.053 3.947 13 C -0.159 4.159 14 C -0.073 4.073 15 C -0.133 4.133 16 C -0.104 4.104 17 C -0.149 4.149 18 C -0.106 4.106 19 C -0.094 4.094 20 C 0.109 3.891 21 N -0.824 5.824 22 C 0.150 3.850 23 H 0.260 0.740 24 H 0.021 0.979 25 H -0.001 1.001 26 H 0.024 0.976 27 H 0.130 0.870 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.022 0.978 38 H 0.092 0.908 39 H 0.333 0.667 40 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.922 -10.053 2.310 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.540 4.540 8 H 0.088 0.912 9 C -0.033 4.033 10 C -0.075 4.075 11 N -0.212 5.212 12 C -0.075 4.075 13 C -0.198 4.198 14 C -0.110 4.110 15 C -0.136 4.136 16 C -0.123 4.123 17 C -0.168 4.168 18 C -0.125 4.125 19 C -0.096 4.096 20 C -0.021 4.021 21 N -0.354 5.354 22 C 0.052 3.948 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.017 0.983 26 H 0.042 0.958 27 H 0.148 0.852 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.040 0.960 38 H 0.110 0.890 39 H 0.144 0.856 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.905 -9.336 1.827 17.682 hybrid contribution 0.360 0.177 0.371 0.547 sum 15.265 -9.159 2.198 17.937 Atomic orbital electron populations 1.69922 1.06233 1.26527 1.52201 1.24964 0.94616 0.98877 0.95053 0.86823 0.80482 0.83911 0.78288 1.20686 1.21735 1.18914 1.21038 0.89446 0.94179 1.49357 0.91198 1.19437 0.96140 0.91906 0.95796 1.23040 0.79799 1.01204 1.03437 1.58706 1.11454 1.27999 1.23091 1.22224 1.00108 0.97672 0.87496 1.22198 1.00827 0.96861 0.99930 1.20485 0.99939 0.99174 0.91410 1.19974 1.04069 0.94007 0.95512 1.20878 0.99868 0.96677 0.94880 1.20844 1.02848 0.99291 0.93792 1.20810 0.99103 0.93356 0.99216 1.19747 1.01238 0.95949 0.92681 1.20580 0.87929 0.98612 0.95022 1.58607 1.07412 1.08088 1.61322 1.18495 0.95753 0.88295 0.92278 0.93024 0.96058 0.98326 0.95811 0.85238 0.91380 0.89550 0.90789 0.91140 0.91102 0.91156 0.86822 0.86706 0.86676 0.95965 0.89000 0.85555 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.22 13.96 55.43 0.77 -27.45 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.50 -14.28 9.66 -34.44 -0.33 -14.62 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.01 0.12 4.17 -27.88 -0.12 0.01 16 10 C 0.05 1.01 4.16 -3.82 -0.02 0.99 16 11 N -0.50 -8.98 3.51 -171.28 -0.60 -9.58 16 12 C 0.05 0.85 5.72 -3.88 -0.02 0.83 16 13 C -0.16 -2.28 6.02 -26.51 -0.16 -2.44 16 14 C -0.07 -0.94 5.82 -27.75 -0.16 -1.10 16 15 C -0.13 -1.96 5.75 -104.33 -0.60 -2.56 16 16 C -0.10 -1.35 9.63 -39.51 -0.38 -1.73 16 17 C -0.15 -1.84 10.05 -39.62 -0.40 -2.23 16 18 C -0.11 -1.38 9.65 -39.71 -0.38 -1.77 16 19 C -0.09 -1.43 5.17 -104.26 -0.54 -1.97 16 20 C 0.11 1.61 6.10 -4.97 -0.03 1.58 16 21 N -0.82 -12.62 6.61 -11.41 -0.08 -12.70 16 22 C 0.15 2.50 5.08 -83.85 -0.43 2.07 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 24 H 0.02 0.53 7.20 -51.93 -0.37 0.15 16 25 H 0.00 -0.04 6.26 -51.93 -0.33 -0.36 16 26 H 0.02 0.52 6.16 -51.93 -0.32 0.20 16 27 H 0.13 2.73 4.22 -51.93 -0.22 2.51 16 28 H 0.07 1.01 8.11 -51.93 -0.42 0.58 16 29 H 0.09 1.49 6.66 -51.93 -0.35 1.14 16 30 H 0.07 1.21 6.31 -51.93 -0.33 0.88 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.02 0.28 8.04 -51.93 -0.42 -0.13 16 38 H 0.09 1.57 7.52 -51.93 -0.39 1.18 16 39 H 0.33 4.50 8.99 -39.29 -0.35 4.14 16 40 H 0.35 5.12 9.08 -39.29 -0.36 4.76 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -31.18 308.19 -9.56 -40.75 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.97 Total: 8.00 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -3.66 Total: -21.12 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.10 Total: -49.73 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.18 -9.56 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702865759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.337 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds