Wall clock time and date at job start Mon Mar 30 2020 06:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47172 * 269.99921 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99931 * 3 2 1 6 6 H 1.48502 * 109.47210 * 150.00073 * 3 2 1 7 7 C 1.37870 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00267 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99926 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47198 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.47005 * 180.02562 * 10 9 7 12 12 C 1.46429 * 110.99976 * 283.22118 * 11 10 9 13 13 C 1.53384 * 108.66700 * 287.78925 * 12 11 10 14 14 C 1.53045 * 107.97057 * 291.75074 * 13 12 11 15 15 C 1.50919 * 109.58597 * 47.34961 * 14 13 12 16 16 C 1.38610 * 118.10629 * 164.60088 * 15 14 13 17 17 C 1.38058 * 120.48841 * 179.37545 * 16 15 14 18 18 C 1.38304 * 119.88464 * 0.02562 * 17 16 15 19 19 C 1.37808 * 119.95782 * 0.14781 * 18 17 16 20 20 C 1.50705 * 119.79216 * 179.97438 * 19 18 17 21 21 N 1.46900 * 109.46884 * 264.40001 * 20 19 18 22 22 C 1.38379 * 122.02890 * 344.24781 * 15 14 13 23 23 H 0.97006 * 120.00225 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47130 * 60.00186 * 9 7 2 25 25 H 1.09000 * 109.46934 * 299.99793 * 9 7 2 26 26 H 1.09001 * 109.47149 * 59.99927 * 10 9 7 27 27 H 1.09005 * 109.46682 * 300.00088 * 10 9 7 28 28 H 1.09002 * 109.60354 * 168.03604 * 12 11 10 29 29 H 1.08998 * 109.73945 * 47.62079 * 12 11 10 30 30 H 1.08995 * 109.77368 * 51.38559 * 13 12 11 31 31 H 1.09007 * 109.77060 * 172.12070 * 13 12 11 32 32 H 1.09004 * 109.44234 * 167.44092 * 14 13 12 33 33 H 1.09002 * 109.44443 * 287.32911 * 14 13 12 34 34 H 1.08003 * 119.75600 * 359.35044 * 16 15 14 35 35 H 1.07997 * 120.05310 * 179.97438 * 17 16 15 36 36 H 1.08001 * 120.02186 * 180.17250 * 18 17 16 37 37 H 1.09001 * 109.47044 * 24.39712 * 20 19 18 38 38 H 1.08996 * 109.47627 * 144.39874 * 20 19 18 39 39 H 1.00901 * 111.00072 * 56.04401 * 21 20 19 40 40 H 1.00898 * 111.00083 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4905 -2.6365 0.0022 12 6 6.0163 -2.3233 -1.3281 13 6 5.7785 -3.5287 -2.2462 14 6 6.6743 -4.6726 -1.7652 15 6 6.5469 -4.8200 -0.2687 16 6 7.0146 -5.9871 0.3148 17 6 6.9344 -6.1681 1.6811 18 6 6.3832 -5.1797 2.4760 19 6 5.9128 -4.0181 1.9027 20 6 5.3123 -2.9437 2.7724 21 7 3.8514 -3.0947 2.7987 22 6 5.9897 -3.8300 0.5215 23 1 -0.4851 0.8401 -0.0004 24 1 3.8745 -0.6800 0.8911 25 1 3.8751 -0.6804 -0.8889 26 1 3.6586 -3.1502 -0.8892 27 1 3.6578 -3.1505 0.8908 28 1 7.0851 -2.1203 -1.2604 29 1 5.5029 -1.4501 -1.7307 30 1 4.7330 -3.8320 -2.1933 31 1 6.0348 -3.2665 -3.2728 32 1 6.3696 -5.6004 -2.2495 33 1 7.7110 -4.4539 -2.0213 34 1 7.4447 -6.7607 -0.3041 35 1 7.3006 -7.0804 2.1282 36 1 6.3218 -5.3178 3.5454 37 1 5.7052 -3.0343 3.7851 38 1 5.5692 -1.9642 2.3693 39 1 3.5888 -4.0185 3.1080 40 1 3.4249 -2.3856 3.3761 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702865759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:01 Heat of formation + Delta-G solvation = 9.670814 kcal Electronic energy + Delta-G solvation = -20176.841008 eV Core-core repulsion = 17376.042879 eV Total energy + Delta-G solvation = -2800.798130 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61648 -38.09687 -36.49498 -35.07941 -33.78343 -32.22175 -31.19203 -30.14908 -26.99939 -25.81879 -24.94653 -24.11430 -22.39027 -21.31875 -20.07174 -18.97295 -17.56606 -17.38472 -16.60294 -16.24493 -16.12831 -15.44649 -15.35007 -15.26162 -14.87966 -14.69436 -14.51039 -13.86574 -13.71962 -13.67685 -13.41198 -13.27523 -12.83926 -12.74030 -12.23764 -12.04266 -11.91839 -11.86721 -11.74830 -11.53578 -11.31474 -11.20119 -10.68035 -10.00840 -9.52792 -9.15580 -8.63223 -8.21781 -6.22127 0.49901 0.55194 1.36493 1.38391 1.51849 2.40795 2.80321 3.13210 3.14314 3.82061 3.85630 3.92823 4.03213 4.09322 4.19824 4.41140 4.45443 4.49533 4.58711 4.59855 4.70595 4.78776 4.86536 4.91480 4.96510 5.01928 5.07828 5.20840 5.23454 5.32949 5.51978 5.59987 5.63275 5.69196 5.76215 5.81655 6.05971 6.29359 6.38054 6.44618 6.69973 6.72048 6.84575 7.40573 8.95235 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024146 B = 0.006586 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.340952 B = 4250.690709 C = 4905.348007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.008 3.992 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.505 4.505 8 H 0.030 0.970 9 C 0.019 3.981 10 C 0.065 3.935 11 N -0.503 5.503 12 C 0.048 3.952 13 C -0.155 4.155 14 C -0.069 4.069 15 C -0.143 4.143 16 C -0.108 4.108 17 C -0.141 4.141 18 C -0.108 4.108 19 C -0.108 4.108 20 C 0.115 3.885 21 N -0.841 5.841 22 C 0.113 3.887 23 H 0.263 0.737 24 H 0.017 0.983 25 H -0.003 1.003 26 H 0.003 0.997 27 H 0.128 0.872 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.342 0.658 40 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.657 -11.054 2.607 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.176 1.176 7 C -0.544 4.544 8 H 0.048 0.952 9 C -0.019 4.019 10 C -0.060 4.060 11 N -0.218 5.218 12 C -0.079 4.079 13 C -0.194 4.194 14 C -0.106 4.106 15 C -0.146 4.146 16 C -0.126 4.126 17 C -0.159 4.159 18 C -0.127 4.127 19 C -0.110 4.110 20 C -0.015 4.015 21 N -0.372 5.372 22 C 0.016 3.984 23 H 0.072 0.928 24 H 0.035 0.965 25 H 0.015 0.985 26 H 0.021 0.979 27 H 0.145 0.855 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.155 0.845 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 17.669 -10.364 2.128 20.595 hybrid contribution -0.495 0.340 0.304 0.673 sum 17.174 -10.024 2.432 20.034 Atomic orbital electron populations 1.70067 1.08069 1.27728 1.53634 1.25838 0.95430 1.02875 0.94682 0.85724 0.79451 0.78980 0.78795 1.19776 1.21056 1.17593 1.21264 0.91638 0.92721 1.48776 0.95187 1.19240 0.93229 0.94266 0.95201 1.22669 0.82505 0.98426 1.02392 1.58554 1.09172 1.29856 1.24247 1.22280 1.00610 0.97841 0.87192 1.22137 0.99630 0.96793 1.00819 1.20523 1.00599 0.99044 0.90431 1.20270 1.03663 0.94195 0.96437 1.21229 0.99289 0.96466 0.95662 1.21276 1.01108 0.99921 0.93635 1.21099 0.98376 0.92596 1.00605 1.19922 1.01802 0.96894 0.92427 1.20472 0.87547 0.97409 0.96090 1.58526 1.08155 1.08738 1.61743 1.18692 0.97904 0.88631 0.93188 0.92781 0.96452 0.98483 0.97864 0.85503 0.89743 0.91357 0.93572 0.89029 0.89565 0.89138 0.84091 0.83557 0.84387 0.93636 0.91645 0.84516 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.82 13.96 21.44 0.30 -60.52 16 2 C 0.01 0.46 5.47 84.65 0.46 0.92 16 3 Si 0.95 46.09 27.47 68.60 1.88 47.98 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 7 C -0.51 -29.88 9.66 25.60 0.25 -29.63 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C 0.02 0.92 4.17 29.85 0.12 1.04 16 10 C 0.06 2.79 4.16 86.31 0.36 3.15 16 11 N -0.50 -18.26 3.51 -695.81 -2.45 -20.70 16 12 C 0.05 1.55 5.72 86.52 0.49 2.04 16 13 C -0.16 -4.30 6.02 30.74 0.18 -4.12 16 14 C -0.07 -1.61 5.82 29.93 0.17 -1.44 16 15 C -0.14 -3.92 5.75 -19.67 -0.11 -4.03 16 16 C -0.11 -2.41 9.63 22.32 0.21 -2.19 16 17 C -0.14 -2.93 10.05 22.24 0.22 -2.70 16 18 C -0.11 -2.51 9.65 22.18 0.21 -2.30 16 19 C -0.11 -3.17 5.17 -19.63 -0.10 -3.27 16 20 C 0.11 3.36 6.10 85.56 0.52 3.88 16 21 N -0.84 -26.04 6.61 -190.00 -1.26 -27.30 16 22 C 0.11 3.67 5.08 38.30 0.19 3.86 16 23 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 24 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 25 H 0.00 -0.15 6.26 -2.39 -0.01 -0.17 16 26 H 0.00 0.15 6.16 -2.39 -0.01 0.13 16 27 H 0.13 5.54 4.22 -2.38 -0.01 5.53 16 28 H 0.08 2.39 8.11 -2.39 -0.02 2.38 16 29 H 0.07 2.38 6.66 -2.39 -0.02 2.36 16 30 H 0.05 1.53 6.31 -2.39 -0.02 1.52 16 31 H 0.09 2.10 8.14 -2.38 -0.02 2.09 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 36 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 37 H 0.05 1.10 8.04 -2.39 -0.02 1.08 16 38 H 0.07 2.25 7.52 -2.39 -0.02 2.24 16 39 H 0.34 9.23 8.99 -89.69 -0.81 8.42 16 40 H 0.35 10.48 9.08 -89.70 -0.81 9.66 16 Total: -1.00 -69.03 308.19 1.06 -67.97 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.62 Total: 27.36 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 3.20 Total: -34.78 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -3.40 Total: -108.52 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.98 kcal Total: -69.03 1.06 -67.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702865759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.638 kcal (2) G-P(sol) polarization free energy of solvation -69.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds