Wall clock time and date at job start Mon Mar 30 2020 06:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38224 * 119.61818 * 2 1 4 4 C 1.38635 * 119.16239 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.78792 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47181 * 269.97447 * 5 4 3 7 7 C 1.46900 * 110.99860 * 293.95951 * 6 5 4 8 8 C 1.46897 * 111.00036 * 170.00107 * 6 5 4 9 9 C 1.52998 * 109.47280 * 196.10248 * 8 6 5 10 10 C 1.50707 * 115.54822 * 55.19813 * 9 8 6 11 11 H 1.07999 * 119.99412 * 265.04454 * 10 9 8 12 12 C 1.37876 * 119.99952 * 85.04087 * 10 9 8 13 13 N 1.31518 * 119.99989 * 4.43155 * 12 10 9 14 14 Si 1.86803 * 119.99713 * 184.43397 * 12 10 9 15 15 H 1.48493 * 109.47202 * 59.99905 * 14 12 10 16 16 H 1.48501 * 109.46955 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47041 * 299.99729 * 14 12 10 18 18 C 1.52997 * 117.50040 * 269.52768 * 9 8 6 19 19 C 1.52996 * 117.49983 * 200.86517 * 9 8 6 20 20 C 1.38670 * 118.41589 * 359.97438 * 4 3 2 21 21 C 1.38173 * 119.16838 * 0.02562 * 20 4 3 22 22 N 1.31857 * 119.62074 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.46825 * 269.97958 * 1 2 3 24 24 H 1.09003 * 109.46738 * 29.97520 * 1 2 3 25 25 H 1.08993 * 109.46860 * 149.97412 * 1 2 3 26 26 H 1.08002 * 120.42414 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47688 * 29.97844 * 5 4 3 28 28 H 1.09004 * 109.46581 * 149.98211 * 5 4 3 29 29 H 1.09000 * 109.47254 * 59.53125 * 7 6 5 30 30 H 1.09005 * 109.46582 * 179.52891 * 7 6 5 31 31 H 1.08993 * 109.47176 * 299.52426 * 7 6 5 32 32 H 1.08997 * 109.47269 * 316.11116 * 8 6 5 33 33 H 1.09005 * 109.46764 * 76.10648 * 8 6 5 34 34 H 0.96999 * 119.99673 * 185.01005 * 13 12 10 35 35 H 1.08996 * 117.50082 * 359.97438 * 18 9 8 36 36 H 1.09003 * 117.49727 * 145.01853 * 18 9 8 37 37 H 1.08999 * 117.50006 * 214.98328 * 19 9 8 38 38 H 1.08998 * 117.49978 * 359.97438 * 19 9 8 39 39 H 1.08006 * 120.41128 * 180.02562 * 20 4 3 40 40 H 1.08000 * 119.62247 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.3581 2.4790 0.0000 6 7 4.6121 2.8983 -1.3848 7 6 5.5022 1.9497 -2.0672 8 6 5.1600 4.2605 -1.4303 9 6 5.0376 4.8122 -2.8521 10 6 3.6494 4.7956 -3.4385 11 1 3.3360 3.9704 -4.0607 12 6 2.7796 5.8338 -3.1805 13 7 3.1886 6.8796 -2.4958 14 14 1.0203 5.7550 -3.8035 15 1 0.3429 4.5672 -3.2245 16 1 0.2953 6.9853 -3.3960 17 1 1.0240 5.6497 -5.2847 18 6 6.2101 4.5741 -3.8057 19 6 5.9547 5.9736 -3.2406 20 6 4.2266 -0.0342 -0.0005 21 6 3.4767 -1.1947 -0.0005 22 7 2.1587 -1.1463 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6508 2.1374 0.0004 27 1 3.7858 3.2511 0.5142 28 1 5.3075 2.3277 0.5137 29 1 5.0438 0.9608 -2.0727 30 1 5.6669 2.2796 -3.0929 31 1 6.4564 1.9049 -1.5423 32 1 4.6040 4.8989 -0.7437 33 1 6.2098 4.2398 -1.1378 34 1 2.5589 7.5759 -2.2517 35 1 7.0689 4.0247 -3.4200 36 1 5.9775 4.4057 -4.8572 37 1 5.5542 6.7254 -3.9206 38 1 6.6449 6.3449 -2.4832 39 1 5.3057 -0.0804 -0.0005 40 1 3.9755 -2.1526 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703118988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:54 Heat of formation + Delta-G solvation = 61.986092 kcal Electronic energy + Delta-G solvation = -19577.005368 eV Core-core repulsion = 16778.475800 eV Total energy + Delta-G solvation = -2798.529569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14146 -37.66816 -35.47210 -32.74189 -32.20747 -31.75944 -27.72956 -26.91079 -26.82017 -25.21630 -23.13753 -21.99025 -21.04331 -20.27105 -18.96209 -16.42214 -16.17657 -15.80997 -15.22022 -14.96184 -14.53988 -14.28625 -14.08706 -13.98127 -13.21398 -13.14843 -12.63040 -12.36764 -12.31442 -11.96694 -11.76062 -11.54591 -11.26370 -11.09361 -10.98232 -10.83399 -10.67289 -10.41052 -10.09786 -9.51340 -9.34931 -9.22396 -8.88075 -8.73194 -8.28510 -8.00783 -7.51353 -5.92132 -3.93817 1.30246 1.46311 3.37314 3.41466 3.45797 3.90606 4.45081 4.50102 4.66545 4.82569 4.96710 5.28101 5.32132 5.35933 5.42297 5.52108 5.63254 5.66057 5.67546 5.84677 5.91435 5.97549 5.99889 6.12723 6.21734 6.24051 6.30841 6.45999 6.51197 6.55512 6.65500 6.75444 6.90632 6.92760 7.15563 7.47569 7.55776 7.77149 7.94061 8.00146 8.15245 8.57719 9.04468 9.68885 11.17205 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.006793 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.191782 B = 4121.144358 C = 5251.580190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.121 3.879 3 C -0.146 4.146 4 C -0.016 4.016 5 C 0.088 3.912 6 N -0.508 5.508 7 C 0.026 3.974 8 C 0.105 3.895 9 C 0.052 3.948 10 C -0.461 4.461 11 H 0.056 0.944 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.885 3.115 15 H -0.277 1.277 16 H -0.290 1.290 17 H -0.280 1.280 18 C -0.218 4.218 19 C -0.152 4.152 20 C -0.176 4.176 21 C 0.095 3.905 22 N -0.494 5.494 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.137 0.863 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.003 0.997 34 H 0.257 0.743 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.128 0.872 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.127 -10.694 6.385 12.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.166 4.166 4 C -0.025 4.025 5 C -0.039 4.039 6 N -0.231 5.231 7 C -0.122 4.122 8 C -0.022 4.022 9 C 0.052 3.948 10 C -0.499 4.499 11 H 0.075 0.925 12 C -0.133 4.133 13 N -0.527 5.527 14 Si 0.713 3.287 15 H -0.202 1.202 16 H -0.216 1.216 17 H -0.205 1.205 18 C -0.255 4.255 19 C -0.190 4.190 20 C -0.197 4.197 21 C -0.062 4.062 22 N -0.205 5.205 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.154 0.846 27 H 0.103 0.897 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.021 0.979 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.146 0.854 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.151 -11.231 6.153 12.807 hybrid contribution 0.436 0.838 0.123 0.953 sum 0.588 -10.394 6.276 12.156 Atomic orbital electron populations 1.20692 0.89112 1.03478 1.02703 1.21244 0.96867 0.88349 0.95155 1.21911 0.94364 0.99362 1.01010 1.20281 0.93970 0.95120 0.93080 1.21113 0.97429 0.93415 0.91988 1.61785 1.47096 1.02624 1.11580 1.22460 0.93058 0.96286 1.00418 1.21720 0.93843 0.87031 0.99649 1.18783 0.90579 0.96042 0.89429 1.20213 0.95537 1.04390 1.29718 0.92538 1.24893 0.98007 0.94803 0.95607 1.70000 1.33881 1.09085 1.39782 0.86785 0.85611 0.77117 0.79206 1.20215 1.21604 1.20535 1.23060 1.01494 1.01317 0.99650 1.22506 1.02898 0.91059 1.02533 1.22001 1.01065 0.93120 1.03466 1.22564 0.89495 0.98000 0.96100 1.67445 1.09996 1.29542 1.13481 0.90742 0.90537 0.90758 0.84560 0.89717 0.94687 0.92559 0.90303 0.97203 0.90845 0.97877 0.93320 0.92210 0.90643 0.89698 0.92339 0.85415 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.17 36.01 0.37 -0.84 16 2 C 0.12 1.79 6.78 -82.59 -0.56 1.23 16 3 C -0.15 -2.28 9.45 -39.44 -0.37 -2.65 16 4 C -0.02 -0.25 4.90 -104.32 -0.51 -0.76 16 5 C 0.09 1.44 5.15 -4.98 -0.03 1.41 16 6 N -0.51 -9.84 4.41 -244.37 -1.08 -10.92 16 7 C 0.03 0.45 8.94 60.06 0.54 0.99 16 8 C 0.10 2.25 4.88 -3.83 -0.02 2.23 16 9 C 0.05 1.26 1.24 -155.66 -0.19 1.06 16 10 C -0.46 -12.37 8.53 -34.44 -0.29 -12.66 16 11 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 12 C 0.07 1.85 5.43 -17.82 -0.10 1.75 16 13 N -0.89 -24.87 12.65 55.43 0.70 -24.17 16 14 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.22 -4.70 8.35 -26.69 -0.22 -4.92 16 19 C -0.15 -3.55 9.18 -26.69 -0.24 -3.79 16 20 C -0.18 -2.38 8.12 -39.45 -0.32 -2.70 16 21 C 0.10 1.27 11.18 -17.55 -0.20 1.07 16 22 N -0.49 -7.48 10.27 -9.48 -0.10 -7.58 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.14 2.10 8.06 -52.49 -0.42 1.67 16 27 H 0.08 1.39 7.82 -51.93 -0.41 0.99 16 28 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 29 H 0.06 0.91 6.16 -51.93 -0.32 0.60 16 30 H 0.08 1.48 6.04 -51.93 -0.31 1.17 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 1.71 7.81 -51.93 -0.41 1.30 16 33 H 0.00 0.06 8.00 -51.93 -0.42 -0.35 16 34 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 35 H 0.06 1.16 8.02 -51.93 -0.42 0.75 16 36 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.08 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 40 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 329.66 15.07 4.97 4.97 Total: -1.00 -29.08 329.66 -9.15 -38.23 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.47 Total: 1.78 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -2.15 Total: -18.58 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.47 Total: -42.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.08 -9.15 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703118988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.213 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds