Wall clock time and date at job start Mon Mar 30 2020 06:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38224 * 119.61818 * 2 1 4 4 C 1.38635 * 119.16239 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.78792 * 180.02562 * 4 3 2 6 6 N 1.46901 * 109.47181 * 269.97447 * 5 4 3 7 7 C 1.46900 * 110.99860 * 293.95951 * 6 5 4 8 8 C 1.46897 * 111.00036 * 170.00107 * 6 5 4 9 9 C 1.52998 * 109.47280 * 196.10248 * 8 6 5 10 10 C 1.50707 * 115.54822 * 55.19813 * 9 8 6 11 11 H 1.07999 * 119.99412 * 265.04454 * 10 9 8 12 12 C 1.37876 * 119.99952 * 85.04087 * 10 9 8 13 13 N 1.31518 * 119.99989 * 4.43155 * 12 10 9 14 14 Si 1.86803 * 119.99713 * 184.43397 * 12 10 9 15 15 H 1.48493 * 109.47202 * 59.99905 * 14 12 10 16 16 H 1.48501 * 109.46955 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47041 * 299.99729 * 14 12 10 18 18 C 1.52997 * 117.50040 * 269.52768 * 9 8 6 19 19 C 1.52996 * 117.49983 * 200.86517 * 9 8 6 20 20 C 1.38670 * 118.41589 * 359.97438 * 4 3 2 21 21 C 1.38173 * 119.16838 * 0.02562 * 20 4 3 22 22 N 1.31857 * 119.62074 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.46825 * 269.97958 * 1 2 3 24 24 H 1.09003 * 109.46738 * 29.97520 * 1 2 3 25 25 H 1.08993 * 109.46860 * 149.97412 * 1 2 3 26 26 H 1.08002 * 120.42414 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47688 * 29.97844 * 5 4 3 28 28 H 1.09004 * 109.46581 * 149.98211 * 5 4 3 29 29 H 1.09000 * 109.47254 * 59.53125 * 7 6 5 30 30 H 1.09005 * 109.46582 * 179.52891 * 7 6 5 31 31 H 1.08993 * 109.47176 * 299.52426 * 7 6 5 32 32 H 1.08997 * 109.47269 * 316.11116 * 8 6 5 33 33 H 1.09005 * 109.46764 * 76.10648 * 8 6 5 34 34 H 0.96999 * 119.99673 * 185.01005 * 13 12 10 35 35 H 1.08996 * 117.50082 * 359.97438 * 18 9 8 36 36 H 1.09003 * 117.49727 * 145.01853 * 18 9 8 37 37 H 1.08999 * 117.50006 * 214.98328 * 19 9 8 38 38 H 1.08998 * 117.49978 * 359.97438 * 19 9 8 39 39 H 1.08006 * 120.41128 * 180.02562 * 20 4 3 40 40 H 1.08000 * 119.62247 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5764 1.1906 -0.0005 5 6 4.3581 2.4790 0.0000 6 7 4.6121 2.8983 -1.3848 7 6 5.5022 1.9497 -2.0672 8 6 5.1600 4.2605 -1.4303 9 6 5.0376 4.8122 -2.8521 10 6 3.6494 4.7956 -3.4385 11 1 3.3360 3.9704 -4.0607 12 6 2.7796 5.8338 -3.1805 13 7 3.1886 6.8796 -2.4958 14 14 1.0203 5.7550 -3.8035 15 1 0.3429 4.5672 -3.2245 16 1 0.2953 6.9853 -3.3960 17 1 1.0240 5.6497 -5.2847 18 6 6.2101 4.5741 -3.8057 19 6 5.9547 5.9736 -3.2406 20 6 4.2266 -0.0342 -0.0005 21 6 3.4767 -1.1947 -0.0005 22 7 2.1587 -1.1463 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6508 2.1374 0.0004 27 1 3.7858 3.2511 0.5142 28 1 5.3075 2.3277 0.5137 29 1 5.0438 0.9608 -2.0727 30 1 5.6669 2.2796 -3.0929 31 1 6.4564 1.9049 -1.5423 32 1 4.6040 4.8989 -0.7437 33 1 6.2098 4.2398 -1.1378 34 1 2.5589 7.5759 -2.2517 35 1 7.0689 4.0247 -3.4200 36 1 5.9775 4.4057 -4.8572 37 1 5.5542 6.7254 -3.9206 38 1 6.6449 6.3449 -2.4832 39 1 5.3057 -0.0804 -0.0005 40 1 3.9755 -2.1526 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703118988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:54 Heat of formation + Delta-G solvation = 45.874459 kcal Electronic energy + Delta-G solvation = -19577.704021 eV Core-core repulsion = 16778.475800 eV Total energy + Delta-G solvation = -2799.228222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.24925 -39.27413 -37.04288 -33.98725 -33.74821 -33.31523 -28.84962 -28.48441 -28.03436 -27.20293 -24.34553 -23.28194 -22.84167 -21.47572 -20.84633 -17.95185 -17.53665 -17.07147 -16.63619 -16.34999 -16.27590 -15.80980 -15.58683 -15.18724 -14.76037 -14.37235 -14.15371 -13.54490 -13.45980 -13.30649 -13.08162 -12.98441 -12.86440 -12.77343 -12.65877 -12.46938 -12.26991 -12.19599 -11.94087 -11.25123 -10.86678 -10.54360 -10.41779 -10.24110 -9.86321 -9.79263 -8.95211 -8.00295 -6.05953 0.22824 0.32452 1.43357 1.44397 1.51482 2.49622 2.77827 3.26035 3.29878 3.47047 3.64102 3.68171 3.87406 4.20696 4.23889 4.30308 4.38031 4.49356 4.50550 4.63088 4.65889 4.70085 4.73365 4.77350 4.77395 4.84757 4.92223 5.00071 5.06307 5.16332 5.20874 5.22791 5.32430 5.48555 5.69153 5.71878 5.84826 5.88759 6.32178 6.38605 6.59650 6.95920 7.07533 7.58528 9.07999 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.006793 C = 0.005330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.191782 B = 4121.144358 C = 5251.580190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.111 3.889 3 C -0.167 4.167 4 C -0.029 4.029 5 C 0.093 3.907 6 N -0.531 5.531 7 C 0.031 3.969 8 C 0.119 3.881 9 C 0.029 3.971 10 C -0.469 4.469 11 H 0.041 0.959 12 C 0.026 3.974 13 N -0.913 5.913 14 Si 0.935 3.065 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.279 1.279 18 C -0.190 4.190 19 C -0.160 4.160 20 C -0.172 4.172 21 C 0.095 3.905 22 N -0.511 5.511 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.127 0.873 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.019 0.981 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.152 0.848 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 -12.552 6.779 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.025 4.025 3 C -0.188 4.188 4 C -0.037 4.037 5 C -0.034 4.034 6 N -0.254 5.254 7 C -0.116 4.116 8 C -0.008 4.008 9 C 0.028 3.972 10 C -0.507 4.507 11 H 0.059 0.941 12 C -0.172 4.172 13 N -0.553 5.553 14 Si 0.762 3.238 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.204 1.204 18 C -0.227 4.227 19 C -0.198 4.198 20 C -0.192 4.192 21 C -0.061 4.061 22 N -0.222 5.222 23 H 0.109 0.891 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.145 0.855 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.170 0.830 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.891 -13.102 6.543 14.672 hybrid contribution 0.233 1.360 -0.011 1.380 sum 1.124 -11.742 6.532 13.483 Atomic orbital electron populations 1.20743 0.87489 1.03715 1.03862 1.21604 0.98175 0.88039 0.94720 1.21980 0.94901 0.99476 1.02434 1.20303 0.93894 0.95469 0.94047 1.21055 0.98331 0.93607 0.90395 1.61648 1.47946 1.02069 1.13764 1.22403 0.93831 0.95988 0.99427 1.21388 0.94340 0.87918 0.97194 1.18900 0.89910 0.97110 0.91294 1.20400 0.97289 1.03631 1.29362 0.94074 1.25456 1.01002 0.94717 0.96054 1.70091 1.34651 1.09537 1.40971 0.85977 0.82113 0.77068 0.78601 1.19971 1.21325 1.20442 1.23013 1.01112 0.99646 0.98956 1.22401 1.03426 0.91191 1.02780 1.22225 1.02291 0.92231 1.02466 1.23153 0.89056 0.99420 0.94507 1.67533 1.11064 1.29527 1.14102 0.89091 0.90457 0.90279 0.85529 0.90941 0.92624 0.91556 0.92004 0.94996 0.93563 0.96275 0.93557 0.89327 0.91131 0.92496 0.91044 0.82986 0.79946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 10.17 71.24 0.72 -1.55 16 2 C 0.11 3.19 6.78 42.55 0.29 3.48 16 3 C -0.17 -5.17 9.45 22.36 0.21 -4.96 16 4 C -0.03 -0.84 4.90 -19.67 -0.10 -0.94 16 5 C 0.09 2.93 5.15 85.56 0.44 3.37 16 6 N -0.53 -19.96 4.41 -927.06 -4.09 -24.05 16 7 C 0.03 1.01 8.94 127.69 1.14 2.15 16 8 C 0.12 5.05 4.88 86.30 0.42 5.47 16 9 C 0.03 1.36 1.24 -52.93 -0.07 1.30 16 10 C -0.47 -25.43 8.53 25.60 0.22 -25.21 16 11 H 0.04 2.30 7.82 -2.91 -0.02 2.28 16 12 C 0.03 1.44 5.43 84.65 0.46 1.90 16 13 N -0.91 -51.95 12.65 21.45 0.27 -51.67 16 14 Si 0.94 44.20 29.54 68.60 2.03 46.22 16 15 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 C -0.19 -7.92 8.35 30.62 0.26 -7.66 16 19 C -0.16 -7.44 9.18 30.62 0.28 -7.16 16 20 C -0.17 -4.16 8.12 22.36 0.18 -3.98 16 21 C 0.10 2.26 11.18 84.67 0.95 3.21 16 22 N -0.51 -14.51 10.27 -183.89 -1.89 -16.40 16 23 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 25 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 27 H 0.07 2.41 7.82 -2.39 -0.02 2.39 16 28 H 0.06 1.51 8.08 -2.38 -0.02 1.49 16 29 H 0.07 1.98 6.16 -2.39 -0.01 1.96 16 30 H 0.06 2.19 6.04 -2.38 -0.01 2.17 16 31 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 2.18 7.81 -2.39 -0.02 2.16 16 33 H 0.02 0.74 8.00 -2.38 -0.02 0.72 16 34 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 35 H 0.09 3.18 8.02 -2.39 -0.02 3.16 16 36 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.07 3.08 8.14 -2.39 -0.02 3.07 16 39 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 40 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -61.92 329.66 2.73 -59.19 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.00 Total: 17.29 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 5.41 Total: -30.58 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -5.70 Total: -92.12 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -61.92 2.73 -59.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703118988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.064 kcal (2) G-P(sol) polarization free energy of solvation -61.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds