Wall clock time and date at job start Mon Mar 30 2020 06:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00360 * 2 1 4 4 H 1.48502 * 109.47154 * 270.46361 * 3 2 1 5 5 H 1.48499 * 109.46935 * 30.45990 * 3 2 1 6 6 H 1.48490 * 109.47260 * 150.46192 * 3 2 1 7 7 C 1.37881 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99584 * 358.38068 * 7 2 1 9 9 C 1.50698 * 119.99774 * 178.38276 * 7 2 1 10 10 C 1.52999 * 115.55016 * 87.30383 * 9 7 2 11 11 N 1.46499 * 109.47338 * 56.82072 * 10 9 7 12 12 C 1.46502 * 120.00197 * 272.96061 * 11 10 9 13 13 C 1.53000 * 109.46812 * 264.59257 * 12 11 10 14 14 N 1.46904 * 109.47007 * 179.97438 * 13 12 11 15 15 C 1.39678 * 119.99847 * 92.95725 * 11 10 9 16 16 C 1.38909 * 120.07186 * 179.60384 * 15 11 10 17 17 C 1.38110 * 119.92329 * 180.02562 * 16 15 11 18 18 C 1.38280 * 120.07251 * 0.02562 * 17 16 15 19 19 C 1.38285 * 120.15462 * 0.27010 * 18 17 16 20 20 C 1.38111 * 120.06968 * 359.45247 * 19 18 17 21 21 C 1.53004 * 117.49822 * 232.96585 * 9 7 2 22 22 C 1.52992 * 117.50088 * 301.62856 * 9 7 2 23 23 H 0.96999 * 119.99489 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47132 * 296.81991 * 10 9 7 25 25 H 1.09001 * 109.47224 * 176.82299 * 10 9 7 26 26 H 1.09000 * 109.46948 * 24.58959 * 12 11 10 27 27 H 1.08995 * 109.47155 * 144.59189 * 12 11 10 28 28 H 1.08999 * 109.47832 * 299.99823 * 13 12 11 29 29 H 1.09002 * 109.47363 * 60.00390 * 13 12 11 30 30 H 1.00892 * 111.00033 * 56.04716 * 14 13 12 31 31 H 1.00897 * 111.00141 * 180.02562 * 14 13 12 32 32 H 1.08004 * 120.04120 * 0.05444 * 16 15 11 33 33 H 1.08004 * 119.96089 * 180.02562 * 17 16 15 34 34 H 1.08000 * 119.92608 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.96522 * 179.69965 * 19 18 17 36 36 H 1.07999 * 120.03352 * 180.27308 * 20 19 18 37 37 H 1.08994 * 117.50305 * 215.00709 * 21 9 7 38 38 H 1.09001 * 117.49436 * 0.03023 * 21 9 7 39 39 H 1.09008 * 117.49651 * 359.97438 * 22 9 7 40 40 H 1.09000 * 117.50269 * 144.97793 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4870 2.0520 -1.4000 5 1 1.4516 2.6498 0.7097 6 1 3.5516 1.4373 0.6902 7 6 2.0045 -1.1941 -0.0005 8 1 1.4647 -2.1292 0.0255 9 6 3.5110 -1.1944 -0.0374 10 6 4.2044 -1.1107 1.3239 11 7 3.7535 -2.2180 2.1706 12 6 2.5431 -2.0730 2.9832 13 6 2.9285 -1.6403 4.3992 14 7 1.7148 -1.4942 5.2139 15 6 4.4775 -3.4121 2.2030 16 6 4.0559 -4.4600 3.0115 17 6 4.7744 -5.6391 3.0415 18 6 5.9125 -5.7769 2.2684 19 6 6.3385 -4.7335 1.4670 20 6 5.6215 -3.5537 1.4279 21 6 4.1909 -2.0266 -1.1264 22 6 4.1889 -0.4987 -1.2194 23 1 -0.4849 0.8401 0.0004 24 1 3.9545 -0.1632 1.8013 25 1 5.2838 -1.1747 1.1864 26 1 1.8941 -1.3194 2.5370 27 1 2.0172 -3.0267 3.0251 28 1 3.5776 -2.3937 4.8455 29 1 3.4544 -0.6864 4.3573 30 1 1.1757 -2.3470 5.2156 31 1 1.9428 -1.2084 6.1544 32 1 3.1670 -4.3530 3.6155 33 1 4.4469 -6.4544 3.6696 34 1 6.4728 -6.6998 2.2940 35 1 7.2305 -4.8427 0.8681 36 1 5.9522 -2.7408 0.7985 37 1 5.1321 -2.5145 -0.8732 38 1 3.5485 -2.5735 -1.8166 39 1 3.5452 -0.0411 -1.9707 40 1 5.1287 0.0190 -1.0272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703961730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:39 Heat of formation + Delta-G solvation = 64.281077 kcal Electronic energy + Delta-G solvation = -20143.204418 eV Core-core repulsion = 17344.774368 eV Total energy + Delta-G solvation = -2798.430051 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.35899 -37.18070 -35.75786 -33.63398 -32.10093 -30.57910 -29.42294 -27.78048 -25.80689 -24.62674 -22.31517 -21.85380 -21.37698 -20.23051 -18.81178 -17.41015 -16.27636 -15.76603 -15.23017 -14.97037 -14.75776 -14.30448 -14.14202 -13.81501 -13.66735 -13.00275 -12.82955 -12.70189 -12.58192 -12.26826 -11.71440 -11.58509 -11.11602 -11.06329 -10.78512 -10.56592 -10.51639 -10.30237 -10.12293 -9.74939 -9.27308 -8.99687 -8.56691 -8.54712 -8.48692 -8.45322 -6.65983 -6.10128 -4.10742 1.85104 2.07968 3.27951 3.38059 3.38744 3.67784 4.33015 4.41286 4.89806 4.98776 5.18200 5.25150 5.33246 5.43721 5.54195 5.56664 5.75833 5.82457 5.86957 5.93131 5.96245 6.10794 6.15245 6.21683 6.30965 6.43754 6.50133 6.50390 6.71634 6.77665 6.85459 6.88746 7.02099 7.07232 7.14043 7.28451 7.35076 7.57421 7.74141 7.95833 8.18481 8.53991 8.93711 9.52654 11.01497 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.008364 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.735727 B = 3346.745847 C = 4331.664454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.475 4.475 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.153 3.847 11 N -0.592 5.592 12 C 0.127 3.873 13 C 0.043 3.957 14 N -0.845 5.845 15 C 0.238 3.762 16 C -0.208 4.208 17 C -0.074 4.074 18 C -0.200 4.200 19 C -0.074 4.074 20 C -0.203 4.203 21 C -0.177 4.177 22 C -0.204 4.204 23 H 0.264 0.736 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.111 0.889 27 H 0.061 0.939 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.339 0.661 31 H 0.337 0.663 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.651 -5.686 7.244 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.125 4.125 3 Si 0.707 3.293 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.185 1.185 7 C -0.513 4.513 8 H 0.093 0.907 9 C -0.015 4.015 10 C 0.030 3.970 11 N -0.296 5.296 12 C 0.003 3.997 13 C -0.089 4.089 14 N -0.375 5.375 15 C 0.133 3.867 16 C -0.231 4.231 17 C -0.093 4.093 18 C -0.221 4.221 19 C -0.093 4.093 20 C -0.225 4.225 21 C -0.215 4.215 22 C -0.242 4.242 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.130 0.870 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.150 -4.783 6.716 12.317 hybrid contribution 0.746 0.191 0.400 0.868 sum 9.896 -4.592 7.116 13.025 Atomic orbital electron populations 1.69889 1.06258 1.27004 1.50135 1.24955 0.94531 0.98783 0.94219 0.86888 0.80363 0.83722 0.78326 1.20649 1.22183 1.18537 1.20143 0.86201 0.94156 1.50790 0.90717 1.19895 0.95648 0.99541 0.86446 1.21298 0.95856 0.88384 0.91442 1.46390 1.26202 1.11802 1.45244 1.21386 0.86817 1.02961 0.88506 1.22305 0.91180 1.00298 0.95115 1.58534 1.22454 1.39635 1.16855 1.17924 0.90294 0.86193 0.92332 1.20605 1.02884 0.94177 1.05452 1.20753 0.94668 0.96224 0.97674 1.20692 0.99661 0.99326 1.02406 1.20786 0.98289 0.92896 0.97291 1.20756 0.97541 0.99523 1.04693 1.22873 1.01164 0.92429 1.04991 1.22977 1.01376 0.95243 1.04576 0.92610 0.91249 0.92865 0.87046 0.92032 0.95927 0.91380 0.84858 0.85069 0.86719 0.87128 0.87407 0.87031 0.86056 0.90729 0.89924 0.89505 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.96 55.43 0.77 -25.61 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.10 24.91 -169.99 -4.23 16.87 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -5.84 5.62 56.52 0.32 -5.52 16 7 C -0.48 -12.56 7.46 -34.44 -0.26 -12.82 16 8 H 0.07 2.23 8.06 -52.48 -0.42 1.81 16 9 C -0.01 -0.30 1.08 -155.66 -0.17 -0.46 16 10 C 0.15 3.03 4.91 -4.04 -0.02 3.01 16 11 N -0.59 -11.07 2.50 -171.75 -0.43 -11.50 16 12 C 0.13 2.34 4.83 -4.04 -0.02 2.32 16 13 C 0.04 0.66 6.99 -3.82 -0.03 0.63 16 14 N -0.85 -11.63 9.62 -10.37 -0.10 -11.73 16 15 C 0.24 4.20 6.53 -83.79 -0.55 3.65 16 16 C -0.21 -3.36 8.80 -39.38 -0.35 -3.71 16 17 C -0.07 -1.07 10.04 -39.61 -0.40 -1.47 16 18 C -0.20 -2.81 10.04 -39.55 -0.40 -3.21 16 19 C -0.07 -1.08 10.04 -39.61 -0.40 -1.48 16 20 C -0.20 -3.36 8.50 -39.38 -0.33 -3.70 16 21 C -0.18 -3.60 9.71 -26.69 -0.26 -3.86 16 22 C -0.20 -4.23 7.64 -26.70 -0.20 -4.43 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.07 1.43 6.38 -51.93 -0.33 1.10 16 25 H 0.05 0.96 6.01 -51.93 -0.31 0.64 16 26 H 0.11 2.49 6.73 -51.93 -0.35 2.14 16 27 H 0.06 1.11 6.52 -51.93 -0.34 0.77 16 28 H 0.02 0.33 7.60 -51.93 -0.39 -0.07 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.34 4.21 8.99 -39.30 -0.35 3.86 16 31 H 0.34 3.79 9.08 -39.29 -0.36 3.43 16 32 H 0.11 1.75 6.06 -52.48 -0.32 1.43 16 33 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.12 2.00 4.42 -52.49 -0.23 1.76 16 37 H 0.07 1.36 5.87 -51.93 -0.30 1.05 16 38 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.09 1.92 7.25 -51.92 -0.38 1.54 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -28.71 312.74 -8.59 -37.30 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -5.85 Total: 13.43 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -3.47 Total: -23.48 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.24 Total: -48.83 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.23 Total: 16.87 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.71 -8.59 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703961730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.582 kcal (2) G-P(sol) polarization free energy of solvation -28.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds