Wall clock time and date at job start Mon Mar 30 2020 06:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00360 * 2 1 4 4 H 1.48502 * 109.47154 * 270.46361 * 3 2 1 5 5 H 1.48499 * 109.46935 * 30.45990 * 3 2 1 6 6 H 1.48490 * 109.47260 * 150.46192 * 3 2 1 7 7 C 1.37881 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99584 * 358.38068 * 7 2 1 9 9 C 1.50698 * 119.99774 * 178.38276 * 7 2 1 10 10 C 1.52999 * 115.55016 * 87.30383 * 9 7 2 11 11 N 1.46499 * 109.47338 * 56.82072 * 10 9 7 12 12 C 1.46502 * 120.00197 * 272.96061 * 11 10 9 13 13 C 1.53000 * 109.46812 * 264.59257 * 12 11 10 14 14 N 1.46904 * 109.47007 * 179.97438 * 13 12 11 15 15 C 1.39678 * 119.99847 * 92.95725 * 11 10 9 16 16 C 1.38909 * 120.07186 * 179.60384 * 15 11 10 17 17 C 1.38110 * 119.92329 * 180.02562 * 16 15 11 18 18 C 1.38280 * 120.07251 * 0.02562 * 17 16 15 19 19 C 1.38285 * 120.15462 * 0.27010 * 18 17 16 20 20 C 1.38111 * 120.06968 * 359.45247 * 19 18 17 21 21 C 1.53004 * 117.49822 * 232.96585 * 9 7 2 22 22 C 1.52992 * 117.50088 * 301.62856 * 9 7 2 23 23 H 0.96999 * 119.99489 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47132 * 296.81991 * 10 9 7 25 25 H 1.09001 * 109.47224 * 176.82299 * 10 9 7 26 26 H 1.09000 * 109.46948 * 24.58959 * 12 11 10 27 27 H 1.08995 * 109.47155 * 144.59189 * 12 11 10 28 28 H 1.08999 * 109.47832 * 299.99823 * 13 12 11 29 29 H 1.09002 * 109.47363 * 60.00390 * 13 12 11 30 30 H 1.00892 * 111.00033 * 56.04716 * 14 13 12 31 31 H 1.00897 * 111.00141 * 180.02562 * 14 13 12 32 32 H 1.08004 * 120.04120 * 0.05444 * 16 15 11 33 33 H 1.08004 * 119.96089 * 180.02562 * 17 16 15 34 34 H 1.08000 * 119.92608 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.96522 * 179.69965 * 19 18 17 36 36 H 1.07999 * 120.03352 * 180.27308 * 20 19 18 37 37 H 1.08994 * 117.50305 * 215.00709 * 21 9 7 38 38 H 1.09001 * 117.49436 * 0.03023 * 21 9 7 39 39 H 1.09008 * 117.49651 * 359.97438 * 22 9 7 40 40 H 1.09000 * 117.50269 * 144.97793 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4870 2.0520 -1.4000 5 1 1.4516 2.6498 0.7097 6 1 3.5516 1.4373 0.6902 7 6 2.0045 -1.1941 -0.0005 8 1 1.4647 -2.1292 0.0255 9 6 3.5110 -1.1944 -0.0374 10 6 4.2044 -1.1107 1.3239 11 7 3.7535 -2.2180 2.1706 12 6 2.5431 -2.0730 2.9832 13 6 2.9285 -1.6403 4.3992 14 7 1.7148 -1.4942 5.2139 15 6 4.4775 -3.4121 2.2030 16 6 4.0559 -4.4600 3.0115 17 6 4.7744 -5.6391 3.0415 18 6 5.9125 -5.7769 2.2684 19 6 6.3385 -4.7335 1.4670 20 6 5.6215 -3.5537 1.4279 21 6 4.1909 -2.0266 -1.1264 22 6 4.1889 -0.4987 -1.2194 23 1 -0.4849 0.8401 0.0004 24 1 3.9545 -0.1632 1.8013 25 1 5.2838 -1.1747 1.1864 26 1 1.8941 -1.3194 2.5370 27 1 2.0172 -3.0267 3.0251 28 1 3.5776 -2.3937 4.8455 29 1 3.4544 -0.6864 4.3573 30 1 1.1757 -2.3470 5.2156 31 1 1.9428 -1.2084 6.1544 32 1 3.1670 -4.3530 3.6155 33 1 4.4469 -6.4544 3.6696 34 1 6.4728 -6.6998 2.2940 35 1 7.2305 -4.8427 0.8681 36 1 5.9522 -2.7408 0.7985 37 1 5.1321 -2.5145 -0.8732 38 1 3.5485 -2.5735 -1.8166 39 1 3.5452 -0.0411 -1.9707 40 1 5.1287 0.0190 -1.0272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703961730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:39 Heat of formation + Delta-G solvation = 46.114597 kcal Electronic energy + Delta-G solvation = -20143.992176 eV Core-core repulsion = 17344.774368 eV Total energy + Delta-G solvation = -2799.217809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67615 -38.69575 -37.13884 -34.91448 -34.18363 -31.76413 -30.68780 -29.19156 -27.75421 -26.07071 -23.58085 -23.35571 -22.76949 -21.62383 -20.54860 -18.77532 -18.09117 -17.02838 -16.78245 -16.51591 -16.09572 -15.76576 -15.38610 -15.22979 -15.01365 -14.76720 -14.27839 -14.17172 -13.96038 -13.68615 -13.26415 -13.03521 -12.90937 -12.47029 -12.27833 -12.15664 -12.02354 -11.90005 -11.63972 -11.47731 -10.91439 -10.74332 -10.41990 -10.25108 -9.70364 -9.60952 -8.23867 -8.00070 -6.26583 0.68143 0.89200 1.36129 1.39044 1.49310 2.29202 2.39635 3.10952 3.15695 3.29710 3.79189 4.00532 4.04940 4.18339 4.25383 4.26886 4.34510 4.42929 4.44496 4.56616 4.58372 4.74042 4.75625 4.85936 4.88044 4.91707 5.05372 5.13324 5.25936 5.30186 5.38563 5.47809 5.58147 5.73079 5.76421 5.87130 6.17122 6.19721 6.35188 6.55913 6.62317 6.75872 6.87692 7.39117 8.91815 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.008364 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.735727 B = 3346.745847 C = 4331.664454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.275 1.275 5 H -0.303 1.303 6 H -0.230 1.230 7 C -0.461 4.461 8 H 0.021 0.979 9 C -0.036 4.036 10 C 0.162 3.838 11 N -0.602 5.602 12 C 0.137 3.863 13 C 0.060 3.940 14 N -0.855 5.855 15 C 0.212 3.788 16 C -0.221 4.221 17 C -0.077 4.077 18 C -0.196 4.196 19 C -0.075 4.075 20 C -0.215 4.215 21 C -0.165 4.165 22 C -0.195 4.195 23 H 0.262 0.738 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.347 0.653 31 H 0.354 0.646 32 H 0.114 0.886 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.053 -6.373 7.920 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.173 4.173 3 Si 0.759 3.241 4 H -0.201 1.201 5 H -0.231 1.231 6 H -0.152 1.152 7 C -0.499 4.499 8 H 0.039 0.961 9 C -0.038 4.038 10 C 0.038 3.962 11 N -0.309 5.309 12 C 0.013 3.987 13 C -0.072 4.072 14 N -0.388 5.388 15 C 0.109 3.891 16 C -0.244 4.244 17 C -0.096 4.096 18 C -0.216 4.216 19 C -0.094 4.094 20 C -0.238 4.238 21 C -0.202 4.202 22 C -0.233 4.233 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.168 0.832 32 H 0.132 0.868 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.140 0.860 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.591 -5.509 7.406 15.612 hybrid contribution -0.340 0.181 0.180 0.425 sum 12.251 -5.328 7.586 15.363 Atomic orbital electron populations 1.70047 1.08249 1.27650 1.52900 1.25703 0.95055 1.02361 0.94195 0.85984 0.80338 0.79067 0.78669 1.20063 1.23088 1.15247 1.20149 0.88827 0.91813 1.49073 0.96085 1.19861 0.93157 1.02118 0.88629 1.21117 0.96936 0.88465 0.89678 1.46302 1.26405 1.12363 1.45782 1.21123 0.86544 1.01016 0.90024 1.22033 0.91688 1.00082 0.93438 1.58480 1.22057 1.40321 1.17913 1.18190 0.91120 0.86090 0.93727 1.20780 1.03310 0.94736 1.05582 1.21106 0.94517 0.96136 0.97807 1.21112 0.99235 1.00194 1.01069 1.21146 0.98822 0.92142 0.97286 1.20897 0.97547 1.00514 1.04802 1.22850 1.01628 0.92484 1.03209 1.23024 1.02111 0.95558 1.02632 0.92915 0.92392 0.90212 0.91790 0.92708 0.94586 0.92031 0.84043 0.83213 0.86813 0.84577 0.84513 0.84297 0.85958 0.87829 0.91774 0.91203 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 2 C 0.02 1.36 5.47 84.66 0.46 1.82 16 3 Si 0.93 43.83 24.91 68.60 1.71 45.54 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 6 H -0.23 -9.55 5.62 99.48 0.56 -8.99 16 7 C -0.46 -25.39 7.46 25.60 0.19 -25.20 16 8 H 0.02 1.35 8.06 -2.91 -0.02 1.32 16 9 C -0.04 -1.56 1.08 -52.93 -0.06 -1.62 16 10 C 0.16 6.19 4.91 86.38 0.42 6.62 16 11 N -0.60 -22.42 2.50 -697.30 -1.74 -24.17 16 12 C 0.14 5.22 4.83 86.38 0.42 5.64 16 13 C 0.06 1.82 6.99 86.30 0.60 2.42 16 14 N -0.86 -23.33 9.62 -186.71 -1.80 -25.12 16 15 C 0.21 7.22 6.53 38.21 0.25 7.47 16 16 C -0.22 -6.84 8.80 22.40 0.20 -6.64 16 17 C -0.08 -1.99 10.04 22.25 0.22 -1.77 16 18 C -0.20 -4.72 10.04 22.29 0.22 -4.50 16 19 C -0.08 -1.92 10.04 22.25 0.22 -1.70 16 20 C -0.22 -6.57 8.50 22.40 0.19 -6.38 16 21 C -0.16 -6.44 9.71 30.62 0.30 -6.14 16 22 C -0.20 -7.66 7.64 30.62 0.23 -7.43 16 23 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 24 H 0.06 2.32 6.38 -2.38 -0.02 2.30 16 25 H 0.08 2.62 6.01 -2.39 -0.01 2.61 16 26 H 0.06 3.03 6.73 -2.39 -0.02 3.02 16 27 H 0.05 2.08 6.52 -2.39 -0.02 2.06 16 28 H 0.04 1.01 7.60 -2.39 -0.02 0.99 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.35 8.59 8.99 -89.70 -0.81 7.78 16 31 H 0.35 7.57 9.08 -89.70 -0.81 6.76 16 32 H 0.11 3.43 6.06 -2.91 -0.02 3.41 16 33 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.12 3.62 4.42 -2.91 -0.01 3.60 16 37 H 0.10 3.45 5.87 -2.39 -0.01 3.43 16 38 H 0.06 2.72 8.14 -2.39 -0.02 2.71 16 39 H 0.07 2.99 7.25 -2.38 -0.02 2.97 16 40 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -65.19 312.74 1.64 -63.55 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -0.71 Total: 36.16 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 3.88 Total: -37.41 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -3.24 Total: -107.85 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.71 Total: 45.54 kcal Total: -65.19 1.64 -63.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703961730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.669 kcal (2) G-P(sol) polarization free energy of solvation -65.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds