Wall clock time and date at job start Mon Mar 30 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00008 * 2 1 4 4 H 1.48494 * 109.47494 * 270.00808 * 3 2 1 5 5 H 1.48498 * 109.46802 * 30.00786 * 3 2 1 6 6 H 1.48502 * 109.46977 * 150.00081 * 3 2 1 7 7 C 1.37878 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46891 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47053 * 179.97438 * 12 11 10 14 14 C 1.46765 * 110.99827 * 174.99955 * 13 12 11 15 15 C 1.50699 * 110.02976 * 174.45455 * 14 13 12 16 16 C 1.38612 * 118.76957 * 162.98466 * 15 14 13 17 17 C 1.38066 * 120.28217 * 179.85391 * 16 15 14 18 18 C 1.38257 * 119.88492 * 359.97438 * 17 16 15 19 19 C 1.38067 * 119.87633 * 0.07354 * 18 17 16 20 20 C 1.37905 * 121.39409 * 342.96516 * 15 14 13 21 21 C 1.50693 * 121.39886 * 0.43249 * 20 15 14 22 22 N 1.45646 * 110.99653 * 297.92953 * 13 12 11 23 23 H 0.96999 * 120.00205 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46836 * 59.99719 * 9 7 2 25 25 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 26 26 H 1.09001 * 109.47142 * 59.99807 * 10 9 7 27 27 H 1.08996 * 109.46698 * 299.99753 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 29 29 H 1.09004 * 109.47108 * 299.99708 * 11 10 9 30 30 H 1.08992 * 109.47056 * 59.99654 * 12 11 10 31 31 H 1.09004 * 109.47006 * 299.99770 * 12 11 10 32 32 H 1.09002 * 109.37568 * 294.62349 * 14 13 12 33 33 H 1.08996 * 109.38324 * 54.28021 * 14 13 12 34 34 H 1.08001 * 119.86064 * 359.83836 * 16 15 14 35 35 H 1.08004 * 120.05801 * 179.97438 * 17 16 15 36 36 H 1.07995 * 120.06384 * 180.10148 * 18 17 16 37 37 H 1.07999 * 119.85821 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.38347 * 103.04384 * 21 20 15 39 39 H 1.09008 * 109.37527 * 222.82026 * 21 20 15 40 40 H 1.00892 * 111.00227 * 288.39182 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4746 -6.1500 -0.0005 13 7 1.7401 -7.4222 0.0007 14 6 2.6591 -8.5602 -0.1193 15 6 1.8994 -9.8542 0.0203 16 6 2.4972 -11.0285 -0.4097 17 6 1.8307 -12.2320 -0.2938 18 6 0.5616 -12.2667 0.2538 19 6 -0.0351 -11.0974 0.6814 20 6 0.6323 -9.8883 0.5636 21 6 -0.0544 -8.6320 1.0338 22 7 0.9289 -7.5553 1.2030 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.8533 -5.0451 -0.8896 29 1 0.8540 -5.0446 0.8904 30 1 3.1019 -6.0921 0.8889 31 1 3.1006 -6.0923 -0.8910 32 1 3.1464 -8.5303 -1.0939 33 1 3.4153 -8.4986 0.6633 34 1 3.4886 -11.0019 -0.8374 35 1 2.2997 -13.1448 -0.6304 36 1 0.0383 -13.2068 0.3473 37 1 -1.0262 -11.1249 1.1095 38 1 -0.7989 -8.3296 0.2975 39 1 -0.5460 -8.8239 1.9876 40 1 1.5074 -7.7178 2.0134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707427176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:16 Heat of formation + Delta-G solvation = 39.023231 kcal Electronic energy + Delta-G solvation = -18522.020434 eV Core-core repulsion = 15722.495121 eV Total energy + Delta-G solvation = -2799.525313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23679 -37.48687 -34.78733 -33.38166 -32.47827 -31.31355 -30.22790 -28.34596 -25.48510 -24.78153 -23.47372 -22.47614 -21.15235 -20.28883 -19.79513 -16.99480 -16.26695 -16.15654 -15.94931 -15.49598 -14.96184 -14.46199 -14.32736 -14.20961 -13.78023 -13.51407 -13.33719 -12.57355 -12.40050 -12.29465 -11.95642 -11.72761 -11.55585 -11.33542 -11.14424 -10.93136 -10.46207 -10.41710 -10.30710 -9.52075 -9.19664 -9.11492 -8.93839 -8.88948 -8.85488 -8.58254 -8.25991 -5.91208 -3.93104 1.07686 1.10609 3.29344 3.36748 3.42604 3.46094 3.47085 4.25890 4.50177 4.53148 4.57270 4.68423 4.81990 5.09728 5.11576 5.27928 5.31522 5.38613 5.44024 5.49705 5.59766 5.68940 5.73166 5.80833 5.98516 6.15921 6.18204 6.25039 6.27013 6.38056 6.66032 6.72033 6.76360 6.99181 7.00486 7.18907 7.32441 7.49915 7.79781 7.97632 8.11487 8.53779 9.14796 9.70229 11.20162 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.058855 B = 0.002945 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.630339 B = 9506.378756 C = 9856.685001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.110 4.110 11 C -0.103 4.103 12 C 0.059 3.941 13 N -0.355 5.355 14 C 0.049 3.951 15 C -0.078 4.078 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.122 4.122 19 C -0.115 4.115 20 C -0.105 4.105 21 C 0.100 3.900 22 N -0.501 5.501 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 -25.268 1.477 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.068 4.068 13 N -0.170 5.170 14 C -0.081 4.081 15 C -0.079 4.079 16 C -0.133 4.133 17 C -0.141 4.141 18 C -0.140 4.140 19 C -0.133 4.133 20 C -0.107 4.107 21 C -0.030 4.030 22 N -0.220 5.220 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.045 -24.595 0.900 24.696 hybrid contribution 1.680 -0.049 0.691 1.817 sum 3.725 -24.643 1.591 24.974 Atomic orbital electron populations 1.69970 1.06020 1.26423 1.51147 1.25031 0.94829 0.99157 0.95545 0.86629 0.79843 0.83694 0.78030 1.20729 1.21278 1.19967 1.21310 0.92973 0.91304 1.50126 0.92858 1.19072 0.94022 0.91193 0.97205 1.21620 0.99092 0.94397 0.99730 1.21495 0.97489 0.92163 1.02896 1.22352 0.95888 0.88163 1.00397 1.66341 1.22838 1.01624 1.26223 1.21674 0.94295 0.89437 1.02649 1.19552 0.94658 0.94634 0.99055 1.21006 0.99992 0.92035 1.00308 1.21064 0.95327 0.97666 1.00022 1.21110 0.95575 0.98180 0.99144 1.21077 0.99907 0.91938 1.00424 1.20436 0.94542 0.96507 0.99180 1.21149 0.94729 0.85129 1.01963 1.64744 1.13986 1.43920 0.99314 0.93101 0.96646 0.96624 0.93857 0.93787 0.92054 0.91210 0.94704 0.90373 0.88601 0.93244 0.86066 0.86073 0.86080 0.85836 0.88305 0.89216 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.29 55.43 0.74 -26.97 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.34 5.15 -26.73 -0.14 -2.47 16 11 C -0.10 -1.85 5.27 -26.73 -0.14 -1.99 16 12 C 0.06 0.86 5.21 -3.82 -0.02 0.84 16 13 N -0.35 -4.81 5.02 -115.16 -0.58 -5.39 16 14 C 0.05 0.55 5.44 -5.05 -0.03 0.52 16 15 C -0.08 -0.87 5.83 -104.61 -0.61 -1.48 16 16 C -0.11 -1.11 9.67 -39.51 -0.38 -1.49 16 17 C -0.12 -1.06 10.05 -39.64 -0.40 -1.46 16 18 C -0.12 -1.05 10.05 -39.64 -0.40 -1.44 16 19 C -0.11 -1.07 9.67 -39.51 -0.38 -1.45 16 20 C -0.10 -1.14 5.82 -104.61 -0.61 -1.75 16 21 C 0.10 1.09 6.68 -5.04 -0.03 1.06 16 22 N -0.50 -6.42 6.09 -11.48 -0.07 -6.49 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.32 7.63 -51.93 -0.40 0.92 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.53 8.12 -51.93 -0.42 0.10 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.31 3.67 8.83 -174.46 -1.54 2.13 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -32.00 327.92 -11.50 -43.50 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.82 Total: -2.11 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -3.69 Total: -24.60 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.09 Total: -38.84 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.00 -11.50 -43.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707427176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.520 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds