Wall clock time and date at job start Mon Mar 30 2020 06:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00008 * 2 1 4 4 H 1.48494 * 109.47494 * 270.00808 * 3 2 1 5 5 H 1.48498 * 109.46802 * 30.00786 * 3 2 1 6 6 H 1.48502 * 109.46977 * 150.00081 * 3 2 1 7 7 C 1.37878 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46891 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47053 * 179.97438 * 12 11 10 14 14 C 1.46765 * 110.99827 * 174.99955 * 13 12 11 15 15 C 1.50699 * 110.02976 * 174.45455 * 14 13 12 16 16 C 1.38612 * 118.76957 * 162.98466 * 15 14 13 17 17 C 1.38066 * 120.28217 * 179.85391 * 16 15 14 18 18 C 1.38257 * 119.88492 * 359.97438 * 17 16 15 19 19 C 1.38067 * 119.87633 * 0.07354 * 18 17 16 20 20 C 1.37905 * 121.39409 * 342.96516 * 15 14 13 21 21 C 1.50693 * 121.39886 * 0.43249 * 20 15 14 22 22 N 1.45646 * 110.99653 * 297.92953 * 13 12 11 23 23 H 0.96999 * 120.00205 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46836 * 59.99719 * 9 7 2 25 25 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 26 26 H 1.09001 * 109.47142 * 59.99807 * 10 9 7 27 27 H 1.08996 * 109.46698 * 299.99753 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 29 29 H 1.09004 * 109.47108 * 299.99708 * 11 10 9 30 30 H 1.08992 * 109.47056 * 59.99654 * 12 11 10 31 31 H 1.09004 * 109.47006 * 299.99770 * 12 11 10 32 32 H 1.09002 * 109.37568 * 294.62349 * 14 13 12 33 33 H 1.08996 * 109.38324 * 54.28021 * 14 13 12 34 34 H 1.08001 * 119.86064 * 359.83836 * 16 15 14 35 35 H 1.08004 * 120.05801 * 179.97438 * 17 16 15 36 36 H 1.07995 * 120.06384 * 180.10148 * 18 17 16 37 37 H 1.07999 * 119.85821 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.38347 * 103.04384 * 21 20 15 39 39 H 1.09008 * 109.37527 * 222.82026 * 21 20 15 40 40 H 1.00892 * 111.00227 * 288.39182 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4746 -6.1500 -0.0005 13 7 1.7401 -7.4222 0.0007 14 6 2.6591 -8.5602 -0.1193 15 6 1.8994 -9.8542 0.0203 16 6 2.4972 -11.0285 -0.4097 17 6 1.8307 -12.2320 -0.2938 18 6 0.5616 -12.2667 0.2538 19 6 -0.0351 -11.0974 0.6814 20 6 0.6323 -9.8883 0.5636 21 6 -0.0544 -8.6320 1.0338 22 7 0.9289 -7.5553 1.2030 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.8533 -5.0451 -0.8896 29 1 0.8540 -5.0446 0.8904 30 1 3.1019 -6.0921 0.8889 31 1 3.1006 -6.0923 -0.8910 32 1 3.1464 -8.5303 -1.0939 33 1 3.4153 -8.4986 0.6633 34 1 3.4886 -11.0019 -0.8374 35 1 2.2997 -13.1448 -0.6304 36 1 0.0383 -13.2068 0.3473 37 1 -1.0262 -11.1249 1.1095 38 1 -0.7989 -8.3296 0.2975 39 1 -0.5460 -8.8239 1.9876 40 1 1.5074 -7.7178 2.0134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707427176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:15 Heat of formation + Delta-G solvation = 20.492077 kcal Electronic energy + Delta-G solvation = -18522.824005 eV Core-core repulsion = 15722.495121 eV Total energy + Delta-G solvation = -2800.328884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01397 -38.44068 -36.43093 -34.76035 -33.88652 -32.48474 -31.11098 -29.89597 -27.00971 -25.61272 -24.95261 -23.25173 -22.59736 -21.63549 -20.99441 -18.42693 -17.75756 -17.15058 -16.91258 -16.51241 -16.43764 -15.81004 -15.55592 -15.22141 -14.68180 -14.62061 -14.23793 -14.07190 -13.82381 -13.67553 -13.22828 -12.97257 -12.86915 -12.68446 -12.40197 -12.22351 -12.18538 -12.03150 -11.84790 -11.30686 -11.27361 -10.97609 -10.53023 -9.93604 -9.80985 -9.64352 -9.46407 -8.17219 -6.28853 0.36220 0.41584 1.40503 1.42698 1.53693 2.32323 2.43111 2.77251 3.15221 3.35835 3.72283 3.83327 3.99580 4.17717 4.21531 4.23795 4.35558 4.42385 4.56063 4.60424 4.60938 4.65113 4.71975 4.80292 4.83147 5.00434 5.06300 5.08085 5.29686 5.32707 5.45269 5.46976 5.54968 5.57134 5.62162 5.77323 5.84043 5.91476 6.04207 6.08782 6.28772 6.54003 6.89200 7.40281 8.94878 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.058855 B = 0.002945 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.630339 B = 9506.378756 C = 9856.685001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.089 4.089 12 C 0.070 3.930 13 N -0.370 5.370 14 C 0.053 3.947 15 C -0.100 4.100 16 C -0.123 4.123 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.122 4.122 20 C -0.122 4.122 21 C 0.102 3.898 22 N -0.516 5.516 23 H 0.263 0.737 24 H -0.013 1.013 25 H -0.013 1.013 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 -26.468 1.507 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.013 4.013 10 C -0.134 4.134 11 C -0.127 4.127 12 C -0.058 4.058 13 N -0.185 5.185 14 C -0.076 4.076 15 C -0.100 4.100 16 C -0.142 4.142 17 C -0.144 4.144 18 C -0.143 4.143 19 C -0.141 4.141 20 C -0.124 4.124 21 C -0.027 4.027 22 N -0.235 5.235 23 H 0.072 0.928 24 H 0.005 0.995 25 H 0.006 0.994 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.525 -25.817 0.929 26.073 hybrid contribution 1.155 0.250 0.683 1.365 sum 4.680 -25.566 1.612 26.041 Atomic orbital electron populations 1.70115 1.07917 1.27728 1.51854 1.26043 0.95796 1.03534 0.94801 0.85420 0.78648 0.78279 0.78530 1.19693 1.20726 1.18627 1.21759 0.93578 0.92501 1.50291 0.92100 1.18998 0.94503 0.93327 0.94445 1.21416 0.97925 0.93764 1.00337 1.21256 0.97648 0.92284 1.01524 1.22126 0.94808 0.87466 1.01382 1.66213 1.23521 1.01834 1.26927 1.21661 0.94010 0.88716 1.03219 1.19684 0.95125 0.94996 1.00221 1.21245 1.00805 0.91916 1.00196 1.21422 0.95395 0.98257 0.99296 1.21469 0.95707 0.98891 0.98227 1.21330 1.00650 0.91713 1.00366 1.20498 0.94925 0.96874 1.00137 1.21135 0.94075 0.84981 1.02551 1.64704 1.14314 1.45190 0.99331 0.92809 0.99469 0.99428 0.93192 0.92984 0.93529 0.92493 0.93910 0.89188 0.87932 0.92592 0.84560 0.83694 0.83680 0.84223 0.89794 0.87392 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.00 13.29 21.45 0.28 -58.72 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.54 -32.11 9.11 25.60 0.23 -31.87 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.36 4.97 29.85 0.15 1.50 16 10 C -0.10 -4.11 5.15 30.59 0.16 -3.95 16 11 C -0.09 -3.26 5.27 30.59 0.16 -3.10 16 12 C 0.07 1.98 5.21 86.30 0.45 2.43 16 13 N -0.37 -9.85 5.02 -518.25 -2.60 -12.45 16 14 C 0.05 1.13 5.44 85.58 0.47 1.60 16 15 C -0.10 -2.11 5.83 -19.85 -0.12 -2.23 16 16 C -0.12 -2.15 9.67 22.32 0.22 -1.93 16 17 C -0.13 -1.87 10.05 22.23 0.22 -1.65 16 18 C -0.13 -1.85 10.05 22.23 0.22 -1.62 16 19 C -0.12 -2.09 9.67 22.32 0.22 -1.87 16 20 C -0.12 -2.56 5.82 -19.86 -0.12 -2.68 16 21 C 0.10 2.22 6.68 85.58 0.57 2.79 16 22 N -0.52 -13.18 6.09 -190.24 -1.16 -14.34 16 23 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 24 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 25 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 27 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 2.21 7.63 -2.38 -0.02 2.19 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 2.33 8.13 -2.38 -0.02 2.31 16 32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 1.11 8.12 -2.39 -0.02 1.09 16 34 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.32 7.37 8.83 -204.68 -1.81 5.56 16 Total: -1.00 -69.35 327.92 1.04 -68.31 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -0.81 Total: 12.21 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 3.30 Total: -42.38 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -3.48 Total: -85.51 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.35 1.04 -68.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707427176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.797 kcal (2) G-P(sol) polarization free energy of solvation -69.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds