Wall clock time and date at job start Mon Mar 30 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 119.61858 * 2 1 4 4 C 1.38626 * 119.16213 * 180.02562 * 3 2 1 5 5 C 1.38669 * 118.42010 * 0.02562 * 4 3 2 6 6 C 1.38185 * 119.16391 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.61879 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46944 * 125.00335 * 7 6 5 9 9 N 1.46901 * 109.46835 * 184.94098 * 8 7 6 10 10 C 1.46904 * 111.00111 * 185.14012 * 9 8 7 11 11 C 1.52996 * 109.47539 * 183.81052 * 10 9 8 12 12 C 1.50698 * 115.55006 * 294.92318 * 11 10 9 13 13 H 1.08001 * 119.99876 * 119.16519 * 12 11 10 14 14 C 1.37870 * 119.99949 * 298.88328 * 12 11 10 15 15 N 1.31513 * 120.00068 * 173.69343 * 14 12 11 16 16 Si 1.86806 * 120.00130 * 353.69963 * 14 12 11 17 17 H 1.48492 * 109.47240 * 93.62849 * 16 14 12 18 18 H 1.48506 * 109.46763 * 213.62774 * 16 14 12 19 19 H 1.48498 * 109.46942 * 333.62753 * 16 14 12 20 20 C 1.53000 * 117.51424 * 80.62121 * 11 10 9 21 21 C 1.52999 * 117.49561 * 149.24786 * 11 10 9 22 22 N 1.31855 * 119.61757 * 180.30449 * 2 1 3 23 23 H 1.08992 * 109.47640 * 89.99011 * 1 2 3 24 24 H 1.09004 * 109.47453 * 209.99801 * 1 2 3 25 25 H 1.09007 * 109.47286 * 329.99212 * 1 2 3 26 26 H 1.08004 * 120.41624 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.79092 * 179.97438 * 4 3 2 28 28 H 1.08005 * 120.41801 * 180.02562 * 5 4 3 29 29 H 1.09007 * 109.47035 * 5.00534 * 7 6 5 30 30 H 1.08999 * 109.47587 * 245.00592 * 7 6 5 31 31 H 1.08990 * 109.47063 * 64.94391 * 8 7 6 32 32 H 1.08995 * 109.47101 * 304.93710 * 8 7 6 33 33 H 1.00906 * 111.00409 * 61.18964 * 9 8 7 34 34 H 1.08999 * 109.46864 * 63.80835 * 10 9 8 35 35 H 1.08997 * 109.46946 * 303.81999 * 10 9 8 36 36 H 0.97002 * 120.00623 * 180.02562 * 15 14 12 37 37 H 1.09002 * 117.49955 * 214.97173 * 20 11 10 38 38 H 1.09004 * 117.50030 * 359.97438 * 20 11 10 39 39 H 1.08994 * 117.50107 * 359.97438 * 21 11 10 40 40 H 1.09009 * 117.49547 * 144.98156 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1906 -0.0005 5 6 4.2266 -0.0342 -0.0016 6 6 3.4766 -1.1948 -0.0016 7 6 4.1726 -2.5313 -0.0021 8 6 3.6747 -3.3661 1.1795 9 7 4.4368 -4.6201 1.2487 10 6 3.9054 -5.5019 2.2966 11 6 4.7802 -6.7527 2.4027 12 6 4.7793 -7.6510 1.1927 13 1 5.6996 -7.8405 0.6602 14 6 3.6047 -8.2356 0.7690 15 7 3.5778 -8.9177 -0.3551 16 14 2.0514 -8.0586 1.7916 17 1 1.2677 -6.8954 1.3041 18 1 1.2344 -9.2927 1.6683 19 1 2.4174 -7.8474 3.2152 20 6 6.0828 -6.6389 3.1971 21 6 4.8993 -7.4170 3.7758 22 7 2.1586 -1.1463 -0.0061 23 1 -0.3634 0.0002 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5140 26 1 1.6507 2.1373 0.0004 27 1 4.1366 2.1140 -0.0010 28 1 5.3056 -0.0804 -0.0016 29 1 5.2485 -2.3807 0.0871 30 1 3.9550 -3.0540 -0.9335 31 1 2.6167 -3.5909 1.0453 32 1 3.8127 -2.8056 2.1041 33 1 5.4190 -4.4389 1.3925 34 1 2.8855 -5.7922 2.0444 35 1 3.9077 -4.9749 3.2506 36 1 2.7514 -9.3287 -0.6534 37 1 6.9391 -7.2138 2.8447 38 1 6.3170 -5.6727 3.6440 39 1 4.3549 -6.9627 4.6036 40 1 4.9767 -8.5039 3.8040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709712928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:47 Heat of formation + Delta-G solvation = 53.405811 kcal Electronic energy + Delta-G solvation = -18812.910040 eV Core-core repulsion = 16014.008403 eV Total energy + Delta-G solvation = -2798.901638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38386 -37.44052 -35.34396 -33.26910 -32.67608 -31.95780 -29.67949 -27.50420 -25.99214 -24.45324 -22.85405 -22.04781 -21.45494 -20.98006 -18.86423 -16.55480 -16.43327 -16.35402 -15.52524 -15.17865 -14.72605 -14.36151 -14.04354 -13.87039 -13.26697 -13.15537 -12.84409 -12.76184 -12.66423 -12.33761 -12.30377 -11.82311 -11.52065 -11.45893 -10.90553 -10.75343 -10.53065 -10.31666 -10.06906 -9.88966 -9.43500 -9.32793 -8.99432 -8.84665 -8.55304 -8.29470 -7.60726 -5.95136 -3.91879 1.01198 1.19709 3.39262 3.47950 3.53167 3.66831 4.11848 4.46790 4.56246 4.58914 4.85676 4.93753 5.01326 5.16292 5.34308 5.39141 5.41006 5.43793 5.46727 5.54492 5.63885 5.81799 5.88243 5.90463 6.03571 6.04928 6.09988 6.22376 6.26029 6.35674 6.44899 6.51523 6.62370 6.66857 6.80530 7.14075 7.18667 7.78984 7.90714 8.00799 8.13704 8.65970 9.07403 9.69812 11.17598 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023638 B = 0.004540 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.236425 B = 6165.428010 C = 6683.043380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.131 3.869 3 C -0.187 4.187 4 C -0.072 4.072 5 C -0.180 4.180 6 C 0.147 3.853 7 C -0.068 4.068 8 C 0.070 3.930 9 N -0.664 5.664 10 C 0.098 3.902 11 C 0.006 3.994 12 C -0.463 4.463 13 H 0.074 0.926 14 C 0.082 3.918 15 N -0.900 5.900 16 Si 0.870 3.130 17 H -0.280 1.280 18 H -0.296 1.296 19 H -0.255 1.255 20 C -0.187 4.187 21 C -0.198 4.198 22 N -0.479 5.479 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.014 0.986 33 H 0.336 0.664 34 H 0.063 0.937 35 H 0.004 0.996 36 H 0.262 0.738 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 20.505 2.505 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.008 4.008 3 C -0.207 4.207 4 C -0.097 4.097 5 C -0.200 4.200 6 C 0.009 3.991 7 C -0.106 4.106 8 C -0.060 4.060 9 N -0.294 5.294 10 C -0.031 4.031 11 C 0.005 3.995 12 C -0.500 4.500 13 H 0.092 0.908 14 C -0.120 4.120 15 N -0.538 5.538 16 Si 0.699 3.301 17 H -0.206 1.206 18 H -0.223 1.223 19 H -0.179 1.179 20 C -0.224 4.224 21 C -0.236 4.236 22 N -0.189 5.189 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.149 0.851 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.033 0.967 33 H 0.154 0.846 34 H 0.081 0.919 35 H 0.022 0.978 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.875 19.308 1.867 19.610 hybrid contribution -0.090 1.409 1.278 1.904 sum -2.965 20.717 3.144 21.163 Atomic orbital electron populations 1.20722 0.88986 1.03418 1.03092 1.21326 0.97024 0.88292 0.94110 1.21897 0.95008 0.99130 1.04632 1.21540 0.94458 0.98179 0.95566 1.21997 1.01398 0.92888 1.03722 1.21387 0.89278 0.95697 0.92734 1.20544 0.98525 0.90052 1.01458 1.21789 0.99649 0.89874 0.94662 1.60157 1.06247 1.12770 1.50240 1.21668 0.98999 0.92693 0.89717 1.19432 0.94012 0.94440 0.91627 1.20127 0.96084 1.25240 1.08550 0.90762 1.24827 0.98335 0.94604 0.94235 1.69901 1.27503 1.35594 1.20785 0.87004 0.83782 0.76816 0.82496 1.20626 1.22328 1.17946 1.22743 0.93271 0.99943 1.06485 1.23067 1.02742 0.99041 0.98758 1.67384 1.09618 1.29243 1.12670 0.90402 0.90312 0.90900 0.85148 0.85026 0.84798 0.90326 0.88661 0.90496 0.96744 0.84644 0.91906 0.97783 0.92839 0.89772 0.91504 0.91650 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.17 36.00 0.37 -0.61 16 2 C 0.13 1.59 6.78 -82.59 -0.56 1.03 16 3 C -0.19 -1.87 9.74 -39.44 -0.38 -2.26 16 4 C -0.07 -0.69 10.18 -39.28 -0.40 -1.09 16 5 C -0.18 -2.02 9.71 -39.44 -0.38 -2.40 16 6 C 0.15 2.05 6.17 -82.59 -0.51 1.54 16 7 C -0.07 -0.98 5.92 -27.88 -0.16 -1.15 16 8 C 0.07 1.20 5.49 -3.82 -0.02 1.18 16 9 N -0.66 -13.23 6.40 -113.78 -0.73 -13.96 16 10 C 0.10 2.14 5.10 -3.82 -0.02 2.12 16 11 C 0.01 0.14 0.92 -155.66 -0.14 0.00 16 12 C -0.46 -13.07 9.32 -34.44 -0.32 -13.39 16 13 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 14 C 0.08 2.39 5.46 -17.82 -0.10 2.29 16 15 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 16 Si 0.87 22.26 24.79 -169.99 -4.21 18.05 16 17 H -0.28 -7.16 6.97 56.52 0.39 -6.76 16 18 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 19 H -0.26 -6.16 5.99 56.52 0.34 -5.82 16 20 C -0.19 -3.81 9.96 -26.73 -0.27 -4.07 16 21 C -0.20 -4.26 8.46 -26.73 -0.23 -4.49 16 22 N -0.48 -7.18 9.90 -5.74 -0.06 -7.23 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.50 8.08 -51.92 -0.42 0.08 16 26 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 27 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.13 1.20 7.95 -52.48 -0.42 0.79 16 29 H 0.08 0.97 7.87 -51.92 -0.41 0.57 16 30 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.34 6.12 8.74 -39.29 -0.34 5.77 16 34 H 0.06 1.50 4.53 -51.93 -0.24 1.27 16 35 H 0.00 0.08 8.09 -51.93 -0.42 -0.34 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 LS Contribution 329.42 15.07 4.96 4.96 Total: -1.00 -32.26 329.42 -8.91 -41.18 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.52 Total: 5.55 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -3.13 Total: -21.29 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.01 Total: -48.44 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.21 Total: 18.05 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.26 -8.91 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709712928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.581 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds