Wall clock time and date at job start Mon Mar 30 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38228 * 119.61858 * 2 1 4 4 C 1.38626 * 119.16213 * 180.02562 * 3 2 1 5 5 C 1.38669 * 118.42010 * 0.02562 * 4 3 2 6 6 C 1.38185 * 119.16391 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.61879 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.46944 * 125.00335 * 7 6 5 9 9 N 1.46901 * 109.46835 * 184.94098 * 8 7 6 10 10 C 1.46904 * 111.00111 * 185.14012 * 9 8 7 11 11 C 1.52996 * 109.47539 * 183.81052 * 10 9 8 12 12 C 1.50698 * 115.55006 * 294.92318 * 11 10 9 13 13 H 1.08001 * 119.99876 * 119.16519 * 12 11 10 14 14 C 1.37870 * 119.99949 * 298.88328 * 12 11 10 15 15 N 1.31513 * 120.00068 * 173.69343 * 14 12 11 16 16 Si 1.86806 * 120.00130 * 353.69963 * 14 12 11 17 17 H 1.48492 * 109.47240 * 93.62849 * 16 14 12 18 18 H 1.48506 * 109.46763 * 213.62774 * 16 14 12 19 19 H 1.48498 * 109.46942 * 333.62753 * 16 14 12 20 20 C 1.53000 * 117.51424 * 80.62121 * 11 10 9 21 21 C 1.52999 * 117.49561 * 149.24786 * 11 10 9 22 22 N 1.31855 * 119.61757 * 180.30449 * 2 1 3 23 23 H 1.08992 * 109.47640 * 89.99011 * 1 2 3 24 24 H 1.09004 * 109.47453 * 209.99801 * 1 2 3 25 25 H 1.09007 * 109.47286 * 329.99212 * 1 2 3 26 26 H 1.08004 * 120.41624 * 0.02562 * 3 2 1 27 27 H 1.08001 * 120.79092 * 179.97438 * 4 3 2 28 28 H 1.08005 * 120.41801 * 180.02562 * 5 4 3 29 29 H 1.09007 * 109.47035 * 5.00534 * 7 6 5 30 30 H 1.08999 * 109.47587 * 245.00592 * 7 6 5 31 31 H 1.08990 * 109.47063 * 64.94391 * 8 7 6 32 32 H 1.08995 * 109.47101 * 304.93710 * 8 7 6 33 33 H 1.00906 * 111.00409 * 61.18964 * 9 8 7 34 34 H 1.08999 * 109.46864 * 63.80835 * 10 9 8 35 35 H 1.08997 * 109.46946 * 303.81999 * 10 9 8 36 36 H 0.97002 * 120.00623 * 180.02562 * 15 14 12 37 37 H 1.09002 * 117.49955 * 214.97173 * 20 11 10 38 38 H 1.09004 * 117.50030 * 359.97438 * 20 11 10 39 39 H 1.08994 * 117.50107 * 359.97438 * 21 11 10 40 40 H 1.09009 * 117.49547 * 144.98156 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1906 -0.0005 5 6 4.2266 -0.0342 -0.0016 6 6 3.4766 -1.1948 -0.0016 7 6 4.1726 -2.5313 -0.0021 8 6 3.6747 -3.3661 1.1795 9 7 4.4368 -4.6201 1.2487 10 6 3.9054 -5.5019 2.2966 11 6 4.7802 -6.7527 2.4027 12 6 4.7793 -7.6510 1.1927 13 1 5.6996 -7.8405 0.6602 14 6 3.6047 -8.2356 0.7690 15 7 3.5778 -8.9177 -0.3551 16 14 2.0514 -8.0586 1.7916 17 1 1.2677 -6.8954 1.3041 18 1 1.2344 -9.2927 1.6683 19 1 2.4174 -7.8474 3.2152 20 6 6.0828 -6.6389 3.1971 21 6 4.8993 -7.4170 3.7758 22 7 2.1586 -1.1463 -0.0061 23 1 -0.3634 0.0002 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5140 26 1 1.6507 2.1373 0.0004 27 1 4.1366 2.1140 -0.0010 28 1 5.3056 -0.0804 -0.0016 29 1 5.2485 -2.3807 0.0871 30 1 3.9550 -3.0540 -0.9335 31 1 2.6167 -3.5909 1.0453 32 1 3.8127 -2.8056 2.1041 33 1 5.4190 -4.4389 1.3925 34 1 2.8855 -5.7922 2.0444 35 1 3.9077 -4.9749 3.2506 36 1 2.7514 -9.3287 -0.6534 37 1 6.9391 -7.2138 2.8447 38 1 6.3170 -5.6727 3.6440 39 1 4.3549 -6.9627 4.6036 40 1 4.9767 -8.5039 3.8040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709712928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:46 Heat of formation + Delta-G solvation = 31.668439 kcal Electronic energy + Delta-G solvation = -18813.852644 eV Core-core repulsion = 16014.008403 eV Total energy + Delta-G solvation = -2799.844241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25055 -39.15349 -36.72387 -34.31607 -34.15238 -33.57394 -30.82758 -28.53564 -27.80969 -26.04217 -24.07926 -23.13438 -22.84864 -22.19510 -20.79385 -18.38086 -17.37508 -17.28047 -17.14540 -16.40640 -16.24024 -15.49607 -15.46351 -15.20002 -14.88915 -14.61909 -14.29856 -13.92600 -13.79969 -13.57549 -13.36544 -13.05807 -12.91411 -12.76338 -12.48534 -12.34529 -12.12796 -12.04283 -11.93704 -11.33829 -10.94546 -10.74939 -10.54349 -10.31825 -10.24530 -9.70844 -9.13672 -8.21447 -6.20683 0.16371 0.39305 1.34788 1.37394 1.49658 2.41523 2.78493 2.98151 3.18598 3.33800 3.52783 3.87877 3.92994 4.08726 4.17432 4.23546 4.27300 4.32119 4.39698 4.50995 4.55196 4.56628 4.67354 4.68280 4.74994 4.80220 4.88166 4.91775 5.03501 5.10167 5.13654 5.19786 5.26988 5.34926 5.39148 5.53476 5.78442 5.84729 6.25387 6.38550 6.69492 6.82106 7.13644 7.44153 8.95238 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023638 B = 0.004540 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.236425 B = 6165.428010 C = 6683.043380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.106 3.894 3 C -0.180 4.180 4 C -0.070 4.070 5 C -0.180 4.180 6 C 0.118 3.882 7 C -0.059 4.059 8 C 0.080 3.920 9 N -0.684 5.684 10 C 0.104 3.896 11 C -0.026 4.026 12 C -0.456 4.456 13 H 0.030 0.970 14 C 0.024 3.976 15 N -0.952 5.952 16 Si 0.930 3.070 17 H -0.285 1.285 18 H -0.299 1.299 19 H -0.227 1.227 20 C -0.163 4.163 21 C -0.191 4.191 22 N -0.522 5.522 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.164 0.836 27 H 0.169 0.831 28 H 0.156 0.844 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.028 0.972 33 H 0.346 0.654 34 H 0.038 0.962 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 23.822 4.640 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.032 4.032 3 C -0.199 4.199 4 C -0.095 4.095 5 C -0.200 4.200 6 C -0.019 4.019 7 C -0.097 4.097 8 C -0.049 4.049 9 N -0.316 5.316 10 C -0.025 4.025 11 C -0.027 4.027 12 C -0.494 4.494 13 H 0.048 0.952 14 C -0.172 4.172 15 N -0.593 5.593 16 Si 0.757 3.243 17 H -0.211 1.211 18 H -0.227 1.227 19 H -0.150 1.150 20 C -0.200 4.200 21 C -0.229 4.229 22 N -0.233 5.233 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.119 0.881 26 H 0.181 0.819 27 H 0.186 0.814 28 H 0.174 0.826 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.165 0.835 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.639 22.639 4.028 23.146 hybrid contribution -0.066 0.450 0.564 0.725 sum -2.705 23.090 4.592 23.697 Atomic orbital electron populations 1.20784 0.87656 1.03930 1.03635 1.21821 0.98224 0.88539 0.94615 1.22296 0.95525 0.99522 1.02569 1.22008 0.94617 0.98939 0.93948 1.22244 1.02456 0.92552 1.02721 1.21318 0.89440 0.95991 0.95176 1.20417 0.99945 0.90350 0.99030 1.21674 0.97731 0.89115 0.96404 1.60078 1.07176 1.14125 1.50178 1.21480 0.97180 0.92441 0.91362 1.19327 0.97651 0.94975 0.90731 1.20315 0.94124 1.25265 1.09691 0.95189 1.25604 1.01730 0.94644 0.95244 1.70050 1.28330 1.37876 1.23088 0.86050 0.79749 0.76109 0.82426 1.21149 1.22697 1.14961 1.22797 0.91819 1.01225 1.04118 1.23085 1.03347 0.98805 0.97674 1.67297 1.10560 1.31301 1.14143 0.89811 0.92062 0.88080 0.81857 0.81370 0.82638 0.88085 0.91240 0.93304 0.95343 0.83495 0.94376 0.95074 0.93029 0.90382 0.87957 0.88927 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 10.17 71.24 0.72 -1.08 16 2 C 0.11 2.45 6.78 42.55 0.29 2.74 16 3 C -0.18 -3.04 9.74 22.36 0.22 -2.82 16 4 C -0.07 -1.10 10.18 22.47 0.23 -0.87 16 5 C -0.18 -3.60 9.71 22.36 0.22 -3.39 16 6 C 0.12 3.22 6.17 42.54 0.26 3.48 16 7 C -0.06 -1.73 5.92 29.85 0.18 -1.55 16 8 C 0.08 2.74 5.49 86.30 0.47 3.21 16 9 N -0.68 -26.90 6.40 -513.90 -3.29 -30.19 16 10 C 0.10 4.41 5.10 86.30 0.44 4.85 16 11 C -0.03 -1.18 0.92 -52.93 -0.05 -1.22 16 12 C -0.46 -26.40 9.32 25.60 0.24 -26.16 16 13 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 14 C 0.02 1.46 5.46 84.65 0.46 1.92 16 15 N -0.95 -61.91 13.96 21.44 0.30 -61.61 16 16 Si 0.93 46.83 24.79 68.60 1.70 48.53 16 17 H -0.28 -14.44 6.97 99.48 0.69 -13.75 16 18 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 19 H -0.23 -10.24 5.99 99.48 0.60 -9.65 16 20 C -0.16 -6.15 9.96 30.59 0.30 -5.85 16 21 C -0.19 -7.67 8.46 30.59 0.26 -7.41 16 22 N -0.52 -15.69 9.90 -172.08 -1.70 -17.40 16 23 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.10 1.14 8.08 -2.38 -0.02 1.12 16 26 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 27 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 28 H 0.16 2.30 7.95 -2.91 -0.02 2.28 16 29 H 0.10 2.39 7.87 -2.38 -0.02 2.37 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 32 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.35 12.15 8.74 -89.69 -0.78 11.36 16 34 H 0.04 1.79 4.53 -2.39 -0.01 1.78 16 35 H 0.03 1.15 8.09 -2.39 -0.02 1.13 16 36 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 37 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -73.52 329.42 1.36 -72.16 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.10 Total: 22.65 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 4.25 Total: -34.14 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -4.69 Total: -109.20 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.70 Total: 48.53 kcal Total: -73.52 1.36 -72.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709712928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.830 kcal (2) G-P(sol) polarization free energy of solvation -73.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds