Wall clock time and date at job start Mon Mar 30 2020 07:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47248 * 2 1 4 4 H 1.08996 * 109.47668 * 305.00236 * 3 2 1 5 5 C 1.50699 * 109.47179 * 185.00000 * 3 2 1 6 6 H 1.07993 * 120.00282 * 240.00115 * 5 3 2 7 7 C 1.37882 * 119.99872 * 60.00521 * 5 3 2 8 8 N 1.31515 * 119.99732 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00047 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47338 * 59.99719 * 9 7 5 11 11 H 1.48502 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46993 * 299.99848 * 9 7 5 13 13 N 1.46500 * 109.46916 * 65.00281 * 3 2 1 14 14 C 1.39669 * 120.00194 * 275.00076 * 13 3 2 15 15 C 1.38933 * 120.07757 * 0.02562 * 14 13 3 16 16 C 1.38085 * 119.92850 * 180.02562 * 15 14 13 17 17 C 1.38257 * 120.12511 * 0.02562 * 16 15 14 18 18 C 1.38507 * 120.08628 * 359.97438 * 17 16 15 19 19 C 1.38057 * 120.04656 * 0.02562 * 18 17 16 20 20 C 1.51201 * 108.24701 * 179.97438 * 18 17 16 21 21 N 1.48055 * 105.67060 * 342.48410 * 20 18 17 22 22 C 1.46901 * 110.99894 * 147.00390 * 21 20 18 23 23 C 1.48039 * 103.89505 * 27.63475 * 21 20 18 24 24 H 1.09001 * 109.47122 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46765 * 299.99647 * 1 2 3 26 26 H 1.08996 * 109.47631 * 59.99477 * 1 2 3 27 27 H 1.09003 * 109.46765 * 240.00353 * 2 1 3 28 28 H 1.08996 * 109.47631 * 120.00523 * 2 1 3 29 29 H 0.96997 * 119.99698 * 180.02562 * 8 7 5 30 30 H 0.97003 * 120.00063 * 94.99886 * 13 3 2 31 31 H 1.08001 * 120.04034 * 0.02562 * 15 14 13 32 32 H 1.07999 * 119.93533 * 179.97438 * 16 15 14 33 33 H 1.07996 * 120.01564 * 179.97438 * 19 18 17 34 34 H 1.08990 * 110.21035 * 223.43104 * 20 18 17 35 35 H 1.09002 * 110.27663 * 101.56056 * 20 18 17 36 36 H 1.09002 * 109.47401 * 59.99568 * 22 21 20 37 37 H 1.09001 * 109.46874 * 299.99580 * 22 21 20 38 38 H 1.09004 * 109.46970 * 179.97438 * 22 21 20 39 39 H 1.08995 * 110.20857 * 91.41382 * 23 21 20 40 40 H 1.09004 * 110.20531 * 213.31195 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8813 -1.3820 10 1 6.5975 0.1473 -0.2351 11 1 6.3977 0.2168 -2.6506 12 1 6.4994 2.2816 -1.3822 13 7 1.6525 2.0974 1.2519 14 6 0.3910 2.6849 1.3713 15 6 -0.4978 2.6487 0.3041 16 6 -1.7440 3.2310 0.4254 17 6 -2.1086 3.8503 1.6065 18 6 -1.2248 3.8881 2.6723 19 6 0.0225 3.3076 2.5568 20 6 -1.8909 4.6223 3.8139 21 7 -3.0185 5.3658 3.2075 22 6 -4.1484 5.4622 4.1413 23 6 -3.3789 4.5586 2.0200 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8291 -0.0616 -2.9496 30 1 2.2720 2.1230 1.9978 31 1 -0.2145 2.1657 -0.6194 32 1 -2.4349 3.2032 -0.4043 33 1 0.7114 3.3378 3.3880 34 1 -1.1885 5.3153 4.2768 35 1 -2.2622 3.9130 4.5537 36 1 -3.8305 5.9843 5.0438 37 1 -4.4903 4.4606 4.4024 38 1 -4.9626 6.0134 3.6708 39 1 -4.1484 3.8313 2.2786 40 1 -3.7274 5.2068 1.2159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709770188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:11 Heat of formation + Delta-G solvation = 41.290175 kcal Electronic energy + Delta-G solvation = -19409.849561 eV Core-core repulsion = 16610.422550 eV Total energy + Delta-G solvation = -2799.427011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03008 -37.76630 -35.28430 -32.74859 -31.52774 -30.73464 -29.69319 -27.33021 -26.74324 -25.21774 -22.96049 -22.29448 -21.00864 -20.81184 -19.04871 -17.16302 -16.13575 -15.67394 -15.52059 -15.00731 -14.86882 -14.13755 -13.81352 -13.59461 -13.12976 -13.00125 -12.86275 -12.66981 -12.49944 -12.02954 -11.76184 -11.46882 -11.42894 -11.30281 -11.16392 -10.88873 -10.79006 -10.39658 -10.20495 -10.16128 -9.69505 -9.31257 -9.00366 -8.59383 -8.47163 -8.11863 -6.44177 -6.18012 -4.26406 1.93309 2.14676 3.23129 3.28251 3.30245 4.02592 4.22664 4.36436 4.47670 4.84322 4.85761 5.13575 5.22682 5.28757 5.47639 5.54171 5.58628 5.68716 5.70705 5.82702 5.90718 6.14788 6.21990 6.30092 6.41035 6.47429 6.50171 6.61836 6.86363 6.91501 6.95282 6.99179 7.06192 7.19092 7.20696 7.37379 7.54308 7.66707 7.81701 8.07073 8.35471 8.69184 8.89216 9.40648 10.87197 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.041312 B = 0.004337 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.612772 B = 6454.162783 C = 6773.072513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C 0.273 3.727 4 H 0.041 0.959 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.722 5.722 14 C 0.243 3.757 15 C -0.197 4.197 16 C -0.053 4.053 17 C -0.193 4.193 18 C -0.060 4.060 19 C -0.199 4.199 20 C 0.079 3.921 21 N -0.512 5.512 22 C 0.014 3.986 23 C 0.091 3.909 24 H 0.028 0.972 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.034 0.966 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.214 5.011 8.395 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.172 4.172 3 C 0.171 3.829 4 H 0.058 0.942 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.344 5.344 14 C 0.134 3.866 15 C -0.220 4.220 16 C -0.072 4.072 17 C -0.197 4.197 18 C -0.061 4.061 19 C -0.223 4.223 20 C -0.049 4.049 21 N -0.235 5.235 22 C -0.134 4.134 23 C -0.037 4.037 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.117 0.883 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.155 0.845 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.975 5.359 7.871 14.530 hybrid contribution 0.993 -0.916 0.410 1.412 sum -9.982 4.443 8.280 13.709 Atomic orbital electron populations 1.22206 0.98977 0.99123 1.00588 1.22026 0.92217 1.00370 1.02554 1.18744 0.94480 0.88736 0.80985 0.94171 1.21188 0.90827 1.38789 1.06210 0.92183 1.24869 0.98660 0.94725 0.95362 1.69854 1.35266 1.37744 1.09424 0.86511 0.84834 0.78370 0.77443 1.20187 1.21103 1.20148 1.45547 1.12037 1.58856 1.17928 1.17849 0.86530 0.89680 0.92574 1.21006 0.94235 1.06825 0.99907 1.20094 0.95669 0.95970 0.95487 1.19971 0.96792 1.06974 0.95928 1.19982 0.93875 0.97133 0.95136 1.19721 0.96846 1.07938 0.97805 1.21566 0.93273 0.95327 0.94712 1.65178 1.06627 1.45373 1.06328 1.22583 0.93862 1.00347 0.96647 1.21399 0.94672 0.94251 0.93352 0.95281 0.93263 0.93374 0.88262 0.94740 0.92494 0.77765 0.84508 0.87018 0.87052 0.89682 0.92670 0.91228 0.95244 0.91114 0.93426 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.22 37.16 0.31 -2.71 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.48 2.20 -69.08 -0.15 6.33 16 4 H 0.04 1.05 6.49 -51.93 -0.34 0.71 16 5 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -23.91 11.29 55.43 0.63 -23.29 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.72 -14.86 5.18 -53.29 -0.28 -15.14 16 14 C 0.24 4.67 5.49 -83.79 -0.46 4.21 16 15 C -0.20 -3.70 6.72 -39.38 -0.26 -3.96 16 16 C -0.05 -0.88 10.03 -39.63 -0.40 -1.28 16 17 C -0.19 -3.10 6.26 -104.27 -0.65 -3.76 16 18 C -0.06 -0.97 6.26 -104.34 -0.65 -1.62 16 19 C -0.20 -3.44 9.89 -39.41 -0.39 -3.83 16 20 C 0.08 1.05 6.61 -4.09 -0.03 1.02 16 21 N -0.51 -6.65 5.76 -243.19 -1.40 -8.05 16 22 C 0.01 0.14 9.35 60.07 0.56 0.70 16 23 C 0.09 1.21 6.61 -4.10 -0.03 1.18 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.96 5.39 -51.93 -0.28 0.68 16 26 H 0.05 0.94 6.35 -51.93 -0.33 0.61 16 27 H 0.10 2.53 5.95 -51.93 -0.31 2.22 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.39 7.53 8.55 -40.82 -0.35 7.19 16 31 H 0.14 2.73 4.01 -52.49 -0.21 2.52 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.67 7.77 -51.93 -0.40 0.27 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.27 7.91 -51.93 -0.41 -0.14 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.58 7.69 -51.93 -0.40 0.18 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -26.98 311.32 -10.03 -37.01 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.95 Total: 8.71 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -2.70 Total: -19.34 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -1.05 Total: -46.47 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.98 -10.03 -37.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709770188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.303 kcal (2) G-P(sol) polarization free energy of solvation -26.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds