Wall clock time and date at job start Mon Mar 30 2020 07:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47377 * 2 1 4 4 H 1.09008 * 109.47501 * 54.74302 * 3 2 1 5 5 C 1.50708 * 109.47188 * 174.73846 * 3 2 1 6 6 H 1.07997 * 119.99601 * 120.00042 * 5 3 2 7 7 C 1.37872 * 119.99971 * 300.00219 * 5 3 2 8 8 N 1.31521 * 119.99621 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00281 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47264 * 89.99822 * 9 7 5 11 11 H 1.48502 * 109.47347 * 210.00105 * 9 7 5 12 12 H 1.48499 * 109.47011 * 329.99985 * 9 7 5 13 13 N 1.46504 * 109.47296 * 294.74201 * 3 2 1 14 14 C 1.39674 * 120.00202 * 157.83086 * 13 3 2 15 15 C 1.38935 * 120.07567 * 355.03489 * 14 13 3 16 16 C 1.38081 * 119.92505 * 179.74019 * 15 14 13 17 17 C 1.38258 * 120.12568 * 0.51994 * 16 15 14 18 18 C 1.38513 * 120.08889 * 359.74958 * 17 16 15 19 19 C 1.38056 * 120.03716 * 359.97438 * 18 17 16 20 20 C 1.51198 * 108.24869 * 179.97438 * 18 17 16 21 21 N 1.48046 * 105.67240 * 17.52231 * 20 18 17 22 22 C 1.46902 * 110.99846 * 91.72785 * 21 20 18 23 23 C 1.48042 * 103.89434 * 332.36287 * 21 20 18 24 24 H 1.09001 * 109.46906 * 55.44473 * 1 2 3 25 25 H 1.09000 * 109.47435 * 175.44222 * 1 2 3 26 26 H 1.08997 * 109.47257 * 295.44625 * 1 2 3 27 27 H 1.09002 * 109.46947 * 120.00172 * 2 1 3 28 28 H 1.09001 * 109.46938 * 239.99725 * 2 1 3 29 29 H 0.97003 * 119.99427 * 179.97438 * 8 7 5 30 30 H 0.96996 * 119.99596 * 337.83175 * 13 3 2 31 31 H 1.08004 * 120.03888 * 359.97438 * 15 14 13 32 32 H 1.07995 * 119.93790 * 180.27250 * 16 15 14 33 33 H 1.08005 * 120.00963 * 180.02562 * 19 18 17 34 34 H 1.08996 * 110.20301 * 136.57133 * 20 18 17 35 35 H 1.08996 * 110.20813 * 258.38911 * 20 18 17 36 36 H 1.08994 * 109.47215 * 59.99729 * 22 21 20 37 37 H 1.09000 * 109.46931 * 179.97438 * 22 21 20 38 38 H 1.09001 * 109.47237 * 299.99567 * 22 21 20 39 39 H 1.08997 * 110.20621 * 146.69338 * 23 21 20 40 40 H 1.09005 * 110.20870 * 268.58438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6019 1.9828 0.8392 5 6 3.5415 1.4443 0.1303 6 1 4.1500 1.8877 -0.6439 7 6 4.1380 0.8801 1.2378 8 7 5.4483 0.8813 1.3512 9 14 3.0854 0.1138 2.5772 10 1 2.8647 -1.3227 2.2723 11 1 3.7776 0.2416 3.8848 12 1 1.7769 0.8133 2.6394 13 7 1.6578 2.0955 -1.2544 14 6 1.5842 3.4887 -1.3223 15 6 1.7719 4.2524 -0.1770 16 6 1.7038 5.6297 -0.2486 17 6 1.4386 6.2495 -1.4557 18 6 1.2455 5.4907 -2.5983 19 6 1.3180 4.1135 -2.5337 20 6 0.9765 6.4310 -3.7513 21 7 1.4458 7.7609 -3.3007 22 6 2.8462 7.9829 -3.6849 23 6 1.3016 7.7085 -1.8282 24 1 -0.3633 0.5829 -0.8464 25 1 -0.3634 -1.0244 -0.0817 26 1 -0.3633 0.4415 0.9279 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 5.8680 0.4847 2.1306 30 1 1.4559 1.5605 -2.0378 31 1 1.9746 3.7696 0.7676 32 1 1.8540 6.2238 0.6407 33 1 1.1678 3.5223 -3.4250 34 1 1.5332 6.1142 -4.6332 35 1 -0.0906 6.4616 -3.9712 36 1 2.9382 7.9289 -4.7696 37 1 3.1653 8.9672 -3.3421 38 1 3.4739 7.2177 -3.2284 39 1 2.0879 8.2942 -1.3519 40 1 0.3213 8.0822 -1.5324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709770190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:13 Heat of formation + Delta-G solvation = 42.739787 kcal Electronic energy + Delta-G solvation = -19493.500625 eV Core-core repulsion = 16694.136474 eV Total energy + Delta-G solvation = -2799.364151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.09441 -37.67465 -35.52378 -32.59744 -31.88797 -30.91374 -29.28637 -27.72138 -26.72554 -25.67208 -22.78433 -22.28877 -21.09010 -20.78574 -19.43912 -17.01444 -16.47989 -15.92383 -15.47308 -15.08342 -14.87898 -14.26447 -13.91544 -13.59239 -13.11309 -13.01071 -12.76367 -12.66318 -12.57950 -12.14904 -11.99448 -11.90117 -11.70190 -11.57050 -11.22610 -10.99522 -10.78075 -10.60018 -10.30955 -10.07687 -9.78790 -9.51405 -8.87898 -8.67987 -8.63039 -8.24256 -6.54805 -6.18984 -4.19725 1.93810 2.13334 3.14956 3.25666 3.28947 4.10264 4.21603 4.26459 4.40142 4.85729 5.04989 5.08651 5.29699 5.35294 5.47579 5.65058 5.68476 5.71382 5.73834 5.82809 5.87939 5.90083 5.91427 5.98816 6.15520 6.31619 6.38720 6.41399 6.48422 6.59369 6.64865 6.70875 6.89627 6.96798 7.05896 7.07764 7.20261 7.43110 7.53474 8.06755 8.42466 8.60263 8.88820 9.41382 10.94086 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027986 B = 0.005270 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.267129 B = 5311.697553 C = 5727.666759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.139 4.139 3 C 0.246 3.754 4 H 0.037 0.963 5 C -0.528 4.528 6 H 0.077 0.923 7 C 0.073 3.927 8 N -0.893 5.893 9 Si 0.880 3.120 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.264 1.264 13 N -0.721 5.721 14 C 0.249 3.751 15 C -0.182 4.182 16 C -0.051 4.051 17 C -0.211 4.211 18 C -0.084 4.084 19 C -0.194 4.194 20 C 0.079 3.921 21 N -0.511 5.511 22 C 0.011 3.989 23 C 0.090 3.910 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.481 7.942 -6.270 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.177 4.177 3 C 0.142 3.858 4 H 0.055 0.945 5 C -0.567 4.567 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.531 5.531 9 Si 0.710 3.290 10 H -0.204 1.204 11 H -0.221 1.221 12 H -0.189 1.189 13 N -0.344 5.344 14 C 0.141 3.859 15 C -0.205 4.205 16 C -0.070 4.070 17 C -0.215 4.215 18 C -0.087 4.087 19 C -0.218 4.218 20 C -0.049 4.049 21 N -0.232 5.232 22 C -0.138 4.138 23 C -0.038 4.038 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.149 0.851 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.549 8.246 -6.214 14.064 hybrid contribution 0.232 -1.572 0.904 1.828 sum -9.317 6.675 -5.310 12.632 Atomic orbital electron populations 1.21846 0.97371 1.00313 1.01440 1.22186 0.93876 0.99702 1.01965 1.19121 0.95389 0.88413 0.82865 0.94513 1.21425 0.89545 1.38650 1.07055 0.90455 1.24947 0.94800 0.95542 0.97687 1.69894 1.08830 1.44837 1.29511 0.86974 0.80768 0.79882 0.81390 1.20352 1.22114 1.18918 1.44930 1.73409 1.01949 1.14152 1.17695 0.90923 0.84551 0.92770 1.20745 1.08342 0.92988 0.98446 1.20147 0.97259 0.93771 0.95871 1.20572 1.10598 0.95752 0.94570 1.20584 0.98666 0.93409 0.95992 1.19728 1.12794 0.92942 0.96337 1.21675 1.01392 0.86166 0.95660 1.65199 1.19857 1.28106 1.10017 1.22584 0.88944 1.01207 1.01024 1.21504 1.01883 0.92854 0.87586 0.92821 0.93805 0.93406 0.92108 0.91781 0.92469 0.77950 0.85144 0.86996 0.87141 0.90782 0.89078 0.91476 0.91345 0.94617 0.91219 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.85 37.16 0.37 -2.14 16 2 C -0.14 -2.77 4.95 -26.74 -0.13 -2.91 16 3 C 0.25 5.42 1.27 -69.08 -0.09 5.33 16 4 H 0.04 0.85 5.50 -51.92 -0.29 0.57 16 5 C -0.53 -14.18 9.29 -34.44 -0.32 -14.50 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 8 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 9 Si 0.88 20.79 24.41 -169.99 -4.15 16.64 16 10 H -0.28 -6.34 6.83 56.52 0.39 -5.96 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.26 -5.92 6.53 56.52 0.37 -5.55 16 13 N -0.72 -14.00 4.65 -53.29 -0.25 -14.25 16 14 C 0.25 4.78 6.59 -83.79 -0.55 4.23 16 15 C -0.18 -3.59 9.18 -39.38 -0.36 -3.95 16 16 C -0.05 -0.88 10.03 -39.63 -0.40 -1.28 16 17 C -0.21 -3.40 6.15 -104.26 -0.64 -4.04 16 18 C -0.08 -1.35 6.18 -104.34 -0.65 -1.99 16 19 C -0.19 -3.32 9.89 -39.41 -0.39 -3.71 16 20 C 0.08 1.04 6.65 -4.10 -0.03 1.01 16 21 N -0.51 -6.65 5.78 -243.20 -1.41 -8.06 16 22 C 0.01 0.13 9.16 60.07 0.55 0.68 16 23 C 0.09 1.20 6.64 -4.10 -0.03 1.17 16 24 H 0.05 0.82 7.62 -51.93 -0.40 0.42 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.30 3.22 -51.93 -0.17 1.14 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.39 6.68 8.57 -40.82 -0.35 6.33 16 31 H 0.13 2.75 6.21 -52.48 -0.33 2.43 16 32 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.07 0.90 7.76 -51.93 -0.40 0.49 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.48 8.05 -51.93 -0.42 0.06 16 39 H 0.07 0.87 7.80 -51.93 -0.41 0.46 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 314.74 15.07 4.74 4.74 Total: -1.00 -29.19 314.74 -9.21 -38.40 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.16 Total: 8.52 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.76 Total: -20.16 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.88 Total: -48.14 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.15 Total: 16.64 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.19 -9.21 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709770190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.140 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds