Wall clock time and date at job start Mon Mar 30 2020 07:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47377 * 2 1 4 4 H 1.09008 * 109.47501 * 54.74302 * 3 2 1 5 5 C 1.50708 * 109.47188 * 174.73846 * 3 2 1 6 6 H 1.07997 * 119.99601 * 120.00042 * 5 3 2 7 7 C 1.37872 * 119.99971 * 300.00219 * 5 3 2 8 8 N 1.31521 * 119.99621 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 120.00281 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47264 * 89.99822 * 9 7 5 11 11 H 1.48502 * 109.47347 * 210.00105 * 9 7 5 12 12 H 1.48499 * 109.47011 * 329.99985 * 9 7 5 13 13 N 1.46504 * 109.47296 * 294.74201 * 3 2 1 14 14 C 1.39674 * 120.00202 * 157.83086 * 13 3 2 15 15 C 1.38935 * 120.07567 * 355.03489 * 14 13 3 16 16 C 1.38081 * 119.92505 * 179.74019 * 15 14 13 17 17 C 1.38258 * 120.12568 * 0.51994 * 16 15 14 18 18 C 1.38513 * 120.08889 * 359.74958 * 17 16 15 19 19 C 1.38056 * 120.03716 * 359.97438 * 18 17 16 20 20 C 1.51198 * 108.24869 * 179.97438 * 18 17 16 21 21 N 1.48046 * 105.67240 * 17.52231 * 20 18 17 22 22 C 1.46902 * 110.99846 * 91.72785 * 21 20 18 23 23 C 1.48042 * 103.89434 * 332.36287 * 21 20 18 24 24 H 1.09001 * 109.46906 * 55.44473 * 1 2 3 25 25 H 1.09000 * 109.47435 * 175.44222 * 1 2 3 26 26 H 1.08997 * 109.47257 * 295.44625 * 1 2 3 27 27 H 1.09002 * 109.46947 * 120.00172 * 2 1 3 28 28 H 1.09001 * 109.46938 * 239.99725 * 2 1 3 29 29 H 0.97003 * 119.99427 * 179.97438 * 8 7 5 30 30 H 0.96996 * 119.99596 * 337.83175 * 13 3 2 31 31 H 1.08004 * 120.03888 * 359.97438 * 15 14 13 32 32 H 1.07995 * 119.93790 * 180.27250 * 16 15 14 33 33 H 1.08005 * 120.00963 * 180.02562 * 19 18 17 34 34 H 1.08996 * 110.20301 * 136.57133 * 20 18 17 35 35 H 1.08996 * 110.20813 * 258.38911 * 20 18 17 36 36 H 1.08994 * 109.47215 * 59.99729 * 22 21 20 37 37 H 1.09000 * 109.46931 * 179.97438 * 22 21 20 38 38 H 1.09001 * 109.47237 * 299.99567 * 22 21 20 39 39 H 1.08997 * 110.20621 * 146.69338 * 23 21 20 40 40 H 1.09005 * 110.20870 * 268.58438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6019 1.9828 0.8392 5 6 3.5415 1.4443 0.1303 6 1 4.1500 1.8877 -0.6439 7 6 4.1380 0.8801 1.2378 8 7 5.4483 0.8813 1.3512 9 14 3.0854 0.1138 2.5772 10 1 2.8647 -1.3227 2.2723 11 1 3.7776 0.2416 3.8848 12 1 1.7769 0.8133 2.6394 13 7 1.6578 2.0955 -1.2544 14 6 1.5842 3.4887 -1.3223 15 6 1.7719 4.2524 -0.1770 16 6 1.7038 5.6297 -0.2486 17 6 1.4386 6.2495 -1.4557 18 6 1.2455 5.4907 -2.5983 19 6 1.3180 4.1135 -2.5337 20 6 0.9765 6.4310 -3.7513 21 7 1.4458 7.7609 -3.3007 22 6 2.8462 7.9829 -3.6849 23 6 1.3016 7.7085 -1.8282 24 1 -0.3633 0.5829 -0.8464 25 1 -0.3634 -1.0244 -0.0817 26 1 -0.3633 0.4415 0.9279 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 5.8680 0.4847 2.1306 30 1 1.4559 1.5605 -2.0378 31 1 1.9746 3.7696 0.7676 32 1 1.8540 6.2238 0.6407 33 1 1.1678 3.5223 -3.4250 34 1 1.5332 6.1142 -4.6332 35 1 -0.0906 6.4616 -3.9712 36 1 2.9382 7.9289 -4.7696 37 1 3.1653 8.9672 -3.3421 38 1 3.4739 7.2177 -3.2284 39 1 2.0879 8.2942 -1.3519 40 1 0.3213 8.0822 -1.5324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709770190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:13 Heat of formation + Delta-G solvation = 22.949101 kcal Electronic energy + Delta-G solvation = -19494.358814 eV Core-core repulsion = 16694.136474 eV Total energy + Delta-G solvation = -2800.222340 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33554 -39.10263 -36.98298 -34.45772 -33.48817 -32.19503 -30.57042 -29.30826 -28.02331 -26.94743 -24.51764 -23.60794 -22.48015 -21.99784 -20.96953 -18.99827 -17.99600 -17.32039 -16.82795 -16.49709 -16.15290 -15.80331 -15.18856 -15.01497 -14.63939 -14.51477 -14.21536 -14.05440 -13.88757 -13.64396 -13.47692 -13.17680 -13.01048 -12.62838 -12.60241 -12.49454 -12.26944 -12.22410 -11.77013 -11.63708 -11.51349 -11.31702 -10.75753 -10.46671 -9.72452 -9.57064 -8.34655 -8.03827 -6.39133 0.56064 0.75702 1.26277 1.32997 1.42350 2.26065 2.72488 2.99131 3.00735 3.09115 3.63697 3.90248 4.16171 4.21048 4.25852 4.29957 4.38118 4.43304 4.54587 4.59189 4.70185 4.74526 4.81676 4.84934 4.97149 4.98412 4.98917 5.01784 5.07473 5.21058 5.23961 5.38927 5.50495 5.55405 5.56928 5.62656 5.90199 5.99491 6.03734 6.19941 6.59627 6.70803 7.12674 7.28291 8.83078 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027986 B = 0.005270 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.267129 B = 5311.697553 C = 5727.666759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.256 3.744 4 H 0.029 0.971 5 C -0.525 4.525 6 H 0.025 0.975 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.945 3.055 10 H -0.259 1.259 11 H -0.299 1.299 12 H -0.245 1.245 13 N -0.722 5.722 14 C 0.225 3.775 15 C -0.212 4.212 16 C -0.058 4.058 17 C -0.212 4.212 18 C -0.088 4.088 19 C -0.195 4.195 20 C 0.082 3.918 21 N -0.509 5.509 22 C 0.010 3.990 23 C 0.092 3.908 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.266 0.734 30 H 0.398 0.602 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.013 0.987 39 H 0.080 0.920 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.969 8.688 -7.208 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.150 3.850 4 H 0.046 0.954 5 C -0.564 4.564 6 H 0.043 0.957 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.185 1.185 11 H -0.227 1.227 12 H -0.168 1.168 13 N -0.348 5.348 14 C 0.119 3.881 15 C -0.235 4.235 16 C -0.078 4.078 17 C -0.215 4.215 18 C -0.090 4.090 19 C -0.218 4.218 20 C -0.046 4.046 21 N -0.229 5.229 22 C -0.138 4.138 23 C -0.036 4.036 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.232 0.768 31 H 0.123 0.877 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.032 0.968 39 H 0.098 0.902 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.068 9.016 -7.189 16.691 hybrid contribution 1.071 -1.629 1.068 2.223 sum -10.997 7.386 -6.121 14.593 Atomic orbital electron populations 1.21769 0.94150 1.02256 1.01942 1.22069 0.96692 0.97290 1.01511 1.18815 0.91925 0.90231 0.83989 0.95360 1.21666 0.92108 1.37213 1.05452 0.95685 1.25813 0.95882 0.96262 1.00337 1.70062 1.11079 1.46912 1.30665 0.85912 0.79542 0.79866 0.77538 1.18525 1.22661 1.16850 1.44680 1.74179 1.02262 1.13690 1.17929 0.92138 0.84463 0.93617 1.20720 1.10600 0.94316 0.97841 1.20339 0.97000 0.93044 0.97368 1.20989 1.08866 0.97666 0.94022 1.21044 0.97278 0.93321 0.97364 1.19947 1.11969 0.93819 0.96074 1.21796 1.02713 0.85303 0.94805 1.65255 1.20479 1.27701 1.09502 1.22667 0.87878 1.01279 1.02010 1.21599 1.03160 0.90880 0.87997 0.91772 0.91192 0.93437 0.93359 0.91457 0.92485 0.76771 0.87707 0.85390 0.85196 0.89419 0.87322 0.89833 0.89837 0.96840 0.90189 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.85 71.98 0.71 -3.61 16 2 C -0.14 -5.30 4.95 30.59 0.15 -5.15 16 3 C 0.26 11.40 1.27 44.24 0.06 11.46 16 4 H 0.03 1.33 5.50 -2.38 -0.01 1.32 16 5 C -0.53 -29.50 9.29 25.60 0.24 -29.26 16 6 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16 7 C 0.01 0.85 5.45 84.65 0.46 1.31 16 8 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 9 Si 0.95 43.46 24.41 68.60 1.67 45.13 16 10 H -0.26 -11.16 6.83 99.48 0.68 -10.48 16 11 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.24 -10.37 6.53 99.48 0.65 -9.72 16 13 N -0.72 -28.31 4.65 -322.50 -1.50 -29.81 16 14 C 0.22 8.75 6.59 38.21 0.25 9.01 16 15 C -0.21 -8.59 9.18 22.40 0.21 -8.39 16 16 C -0.06 -2.02 10.03 22.24 0.22 -1.79 16 17 C -0.21 -6.51 6.15 -19.63 -0.12 -6.64 16 18 C -0.09 -2.65 6.18 -19.68 -0.12 -2.77 16 19 C -0.19 -6.46 9.89 22.38 0.22 -6.23 16 20 C 0.08 1.89 6.65 85.49 0.57 2.46 16 21 N -0.51 -11.63 5.78 -923.34 -5.34 -16.97 16 22 C 0.01 0.21 9.16 127.69 1.17 1.38 16 23 C 0.09 2.20 6.64 85.50 0.57 2.77 16 24 H 0.06 1.79 7.62 -2.39 -0.02 1.77 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.98 3.22 -2.39 -0.01 1.97 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.40 13.55 8.57 -92.71 -0.79 12.76 16 31 H 0.10 4.70 6.21 -2.91 -0.02 4.68 16 32 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 33 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.09 1.83 7.76 -2.39 -0.02 1.81 16 35 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.01 0.33 8.05 -2.39 -0.02 0.31 16 39 H 0.08 1.78 7.80 -2.39 -0.02 1.76 16 40 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -65.97 314.74 -0.13 -66.10 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.15 Total: 29.71 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 4.58 Total: -35.46 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -6.54 Total: -105.48 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.67 Total: 45.13 kcal Total: -65.97 -0.13 -66.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709770190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.054 kcal (2) G-P(sol) polarization free energy of solvation -65.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds