Wall clock time and date at job start Mon Mar 30 2020 06:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99532 * 2 1 4 4 H 1.48498 * 109.47518 * 270.00169 * 3 2 1 5 5 H 1.48502 * 109.47372 * 30.00284 * 3 2 1 6 6 H 1.48509 * 109.46853 * 150.00240 * 3 2 1 7 7 C 1.37868 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00396 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00096 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47403 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47599 * 180.02562 * 10 9 7 12 12 C 1.46799 * 110.99735 * 273.94410 * 11 10 9 13 13 C 1.51719 * 111.15739 * 324.38932 * 12 11 10 14 14 C 1.51768 * 113.88656 * 292.45715 * 13 12 11 15 15 C 1.53168 * 110.63924 * 66.81570 * 14 13 12 16 16 C 1.51477 * 108.25261 * 276.75586 * 15 14 13 17 17 C 1.38157 * 119.67625 * 249.49371 * 16 15 14 18 18 C 1.38947 * 119.60814 * 180.13763 * 17 16 15 19 19 N 1.40004 * 120.00298 * 179.74036 * 18 17 16 20 20 C 1.38875 * 119.98663 * 0.02562 * 18 17 16 21 21 C 1.38112 * 120.11572 * 359.95435 * 20 18 17 22 22 C 1.37749 * 119.83961 * 69.56618 * 16 15 14 23 23 H 0.97000 * 119.99984 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47289 * 59.99866 * 9 7 2 25 25 H 1.09003 * 109.46743 * 299.99548 * 9 7 2 26 26 H 1.09006 * 109.47635 * 59.99445 * 10 9 7 27 27 H 1.09007 * 109.47062 * 299.99559 * 10 9 7 28 28 H 1.09000 * 109.14565 * 203.95794 * 12 11 10 29 29 H 1.09004 * 109.09981 * 84.78654 * 12 11 10 30 30 H 1.08992 * 108.60661 * 171.31625 * 13 12 11 31 31 H 1.09001 * 108.59843 * 53.59026 * 13 12 11 32 32 H 1.09000 * 109.24517 * 306.51671 * 14 13 12 33 33 H 1.09006 * 109.24210 * 187.11493 * 14 13 12 34 34 H 1.09000 * 109.70558 * 157.06279 * 15 14 13 35 35 H 1.09003 * 109.73834 * 36.46488 * 15 14 13 36 36 H 1.07999 * 120.19912 * 0.15116 * 17 16 15 37 37 H 0.97000 * 119.99679 * 359.97438 * 19 18 17 38 38 H 0.96998 * 119.99835 * 179.97438 * 19 18 17 39 39 H 1.08005 * 119.94054 * 179.97438 * 20 18 17 40 40 H 1.07995 * 120.15055 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5110 -4.9342 -0.0032 12 6 1.1649 -5.3437 1.3634 13 6 2.2594 -4.9634 2.3428 14 6 3.5533 -5.7322 2.1474 15 6 4.2061 -5.3600 0.8127 16 6 3.5597 -6.1880 -0.2788 17 6 4.2868 -7.1822 -0.9045 18 6 3.6934 -7.9389 -1.9075 19 7 4.4242 -8.9449 -2.5508 20 6 2.3771 -7.6931 -2.2757 21 6 1.6556 -6.6979 -1.6459 22 6 2.2534 -5.9440 -0.6414 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8920 25 1 0.6242 -2.5574 0.8881 26 1 2.8715 -3.6046 0.8890 27 1 2.8727 -3.6038 -0.8910 28 1 1.0231 -6.4241 1.3878 29 1 0.2362 -4.8547 1.6578 30 1 1.8979 -5.1429 3.3552 31 1 2.4679 -3.8989 2.2350 32 1 3.3410 -6.8013 2.1577 33 1 4.2386 -5.4948 2.9611 34 1 5.2740 -5.5748 0.8533 35 1 4.0518 -4.3002 0.6103 36 1 5.3103 -7.3704 -0.6156 37 1 5.3450 -9.1134 -2.2966 38 1 4.0098 -9.4733 -3.2507 39 1 1.9167 -8.2814 -3.0557 40 1 0.6321 -6.5060 -1.9321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710965290.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:04 Heat of formation + Delta-G solvation = 41.882537 kcal Electronic energy + Delta-G solvation = -19864.718711 eV Core-core repulsion = 17065.317387 eV Total energy + Delta-G solvation = -2799.401324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52075 -37.70076 -33.93985 -33.86466 -32.82632 -31.04022 -29.68965 -28.63741 -26.07815 -24.31838 -23.85554 -22.28912 -21.33611 -20.20727 -18.71628 -16.87378 -16.77451 -16.47075 -15.91771 -15.28398 -14.64438 -14.42558 -14.01230 -13.74279 -13.15804 -13.09808 -12.74561 -12.59256 -12.33213 -12.22896 -11.94592 -11.62992 -11.34923 -11.06102 -10.85525 -10.74403 -10.46282 -10.33502 -10.19796 -9.92719 -9.41853 -9.36103 -9.03403 -8.48191 -8.26623 -7.66647 -7.17925 -5.93490 -3.95834 1.67082 1.84425 3.35441 3.41608 3.44267 3.89600 4.07695 4.44949 4.65523 4.91359 5.07036 5.21761 5.26730 5.33358 5.42380 5.52993 5.69330 5.78258 5.83920 5.92891 6.03136 6.05406 6.18078 6.22821 6.32444 6.38076 6.42183 6.47979 6.53857 6.58078 6.82752 7.00417 7.03440 7.17678 7.52248 7.57676 7.77396 7.77771 7.96611 8.12250 8.21396 8.50441 9.12245 9.67572 11.17770 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.005185 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.927989 B = 5399.026669 C = 5613.252716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.033 3.967 10 C 0.039 3.961 11 N -0.490 5.490 12 C 0.065 3.935 13 C -0.168 4.168 14 C -0.106 4.106 15 C -0.114 4.114 16 C -0.058 4.058 17 C -0.191 4.191 18 C 0.201 3.799 19 N -0.886 5.886 20 C -0.199 4.199 21 C -0.051 4.051 22 C 0.047 3.953 23 H 0.259 0.741 24 H 0.021 0.979 25 H 0.016 0.984 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.394 0.606 38 H 0.394 0.606 39 H 0.116 0.884 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.528 -17.037 -0.175 18.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.086 4.086 11 N -0.210 5.210 12 C -0.062 4.062 13 C -0.206 4.206 14 C -0.144 4.144 15 C -0.151 4.151 16 C -0.061 4.061 17 C -0.214 4.214 18 C 0.098 3.902 19 N -0.426 5.426 20 C -0.222 4.222 21 C -0.071 4.071 22 C -0.048 4.048 23 H 0.069 0.931 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.221 0.779 38 H 0.222 0.778 39 H 0.134 0.866 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.872 -16.786 -0.391 18.142 hybrid contribution 1.417 0.511 0.149 1.513 sum 8.289 -16.275 -0.242 18.266 Atomic orbital electron populations 1.69980 1.05987 1.26422 1.50785 1.24969 0.94778 0.99021 0.95424 0.86648 0.79833 0.83739 0.78073 1.20719 1.21280 1.19954 1.21202 0.92886 0.91161 1.50684 0.92943 1.19019 0.93953 0.89730 0.97766 1.23035 0.97287 0.88005 1.00249 1.60586 1.42889 1.01836 1.15675 1.21820 0.97923 0.99573 0.86863 1.21798 0.95887 1.02943 0.99993 1.21234 0.96819 1.00054 0.96280 1.21496 0.98687 1.02040 0.92871 1.20181 0.94563 0.95332 0.96030 1.20339 1.00015 1.00285 1.00766 1.17764 0.91217 0.89010 0.92163 1.42449 1.15656 1.40140 1.44375 1.20458 0.93598 1.03162 1.04957 1.20897 0.99629 0.93051 0.93477 1.18679 0.91284 0.96400 0.98478 0.93087 0.96031 0.96550 0.91966 0.92745 0.92320 0.90374 0.92016 0.89396 0.92486 0.91976 0.91685 0.87561 0.86844 0.77910 0.77847 0.86603 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.87 5.21 -27.89 -0.15 0.72 16 10 C 0.04 0.84 2.85 -3.83 -0.01 0.83 16 11 N -0.49 -9.32 4.64 -171.94 -0.80 -10.12 16 12 C 0.07 1.10 5.77 -4.53 -0.03 1.07 16 13 C -0.17 -2.58 5.18 -28.01 -0.14 -2.73 16 14 C -0.11 -1.46 5.67 -27.27 -0.15 -1.62 16 15 C -0.11 -1.70 5.44 -27.41 -0.15 -1.84 16 16 C -0.06 -0.92 4.81 -104.45 -0.50 -1.42 16 17 C -0.19 -2.64 9.53 -39.35 -0.38 -3.01 16 18 C 0.20 2.58 6.76 -83.63 -0.57 2.02 16 19 N -0.89 -8.07 9.10 32.48 0.30 -7.77 16 20 C -0.20 -2.68 9.88 -39.39 -0.39 -3.07 16 21 C -0.05 -0.80 9.97 -39.31 -0.39 -1.19 16 22 C 0.05 0.81 4.28 -83.67 -0.36 0.45 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.02 0.45 8.10 -51.93 -0.42 0.03 16 26 H 0.06 1.27 2.63 -51.93 -0.14 1.13 16 27 H 0.05 1.21 7.57 -51.92 -0.39 0.82 16 28 H 0.06 0.91 7.76 -51.93 -0.40 0.51 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.56 5.61 -51.93 -0.29 1.27 16 32 H 0.06 0.77 7.88 -51.93 -0.41 0.36 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.84 7.92 -51.93 -0.41 0.43 16 35 H 0.11 1.80 4.21 -51.93 -0.22 1.58 16 36 H 0.11 1.36 7.97 -52.49 -0.42 0.94 16 37 H 0.39 2.90 8.84 -40.82 -0.36 2.53 16 38 H 0.39 2.84 8.84 -40.82 -0.36 2.48 16 39 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -31.10 309.90 -9.64 -40.74 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.90 Total: 5.36 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -3.63 Total: -23.27 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.23 Total: -44.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.10 -9.64 -40.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710965290.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.624 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds