Wall clock time and date at job start Mon Mar 30 2020 06:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99532 * 2 1 4 4 H 1.48498 * 109.47518 * 270.00169 * 3 2 1 5 5 H 1.48502 * 109.47372 * 30.00284 * 3 2 1 6 6 H 1.48509 * 109.46853 * 150.00240 * 3 2 1 7 7 C 1.37868 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00396 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00096 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47403 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47599 * 180.02562 * 10 9 7 12 12 C 1.46799 * 110.99735 * 273.94410 * 11 10 9 13 13 C 1.51719 * 111.15739 * 324.38932 * 12 11 10 14 14 C 1.51768 * 113.88656 * 292.45715 * 13 12 11 15 15 C 1.53168 * 110.63924 * 66.81570 * 14 13 12 16 16 C 1.51477 * 108.25261 * 276.75586 * 15 14 13 17 17 C 1.38157 * 119.67625 * 249.49371 * 16 15 14 18 18 C 1.38947 * 119.60814 * 180.13763 * 17 16 15 19 19 N 1.40004 * 120.00298 * 179.74036 * 18 17 16 20 20 C 1.38875 * 119.98663 * 0.02562 * 18 17 16 21 21 C 1.38112 * 120.11572 * 359.95435 * 20 18 17 22 22 C 1.37749 * 119.83961 * 69.56618 * 16 15 14 23 23 H 0.97000 * 119.99984 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47289 * 59.99866 * 9 7 2 25 25 H 1.09003 * 109.46743 * 299.99548 * 9 7 2 26 26 H 1.09006 * 109.47635 * 59.99445 * 10 9 7 27 27 H 1.09007 * 109.47062 * 299.99559 * 10 9 7 28 28 H 1.09000 * 109.14565 * 203.95794 * 12 11 10 29 29 H 1.09004 * 109.09981 * 84.78654 * 12 11 10 30 30 H 1.08992 * 108.60661 * 171.31625 * 13 12 11 31 31 H 1.09001 * 108.59843 * 53.59026 * 13 12 11 32 32 H 1.09000 * 109.24517 * 306.51671 * 14 13 12 33 33 H 1.09006 * 109.24210 * 187.11493 * 14 13 12 34 34 H 1.09000 * 109.70558 * 157.06279 * 15 14 13 35 35 H 1.09003 * 109.73834 * 36.46488 * 15 14 13 36 36 H 1.07999 * 120.19912 * 0.15116 * 17 16 15 37 37 H 0.97000 * 119.99679 * 359.97438 * 19 18 17 38 38 H 0.96998 * 119.99835 * 179.97438 * 19 18 17 39 39 H 1.08005 * 119.94054 * 179.97438 * 20 18 17 40 40 H 1.07995 * 120.15055 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5110 -4.9342 -0.0032 12 6 1.1649 -5.3437 1.3634 13 6 2.2594 -4.9634 2.3428 14 6 3.5533 -5.7322 2.1474 15 6 4.2061 -5.3600 0.8127 16 6 3.5597 -6.1880 -0.2788 17 6 4.2868 -7.1822 -0.9045 18 6 3.6934 -7.9389 -1.9075 19 7 4.4242 -8.9449 -2.5508 20 6 2.3771 -7.6931 -2.2757 21 6 1.6556 -6.6979 -1.6459 22 6 2.2534 -5.9440 -0.6414 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8920 25 1 0.6242 -2.5574 0.8881 26 1 2.8715 -3.6046 0.8890 27 1 2.8727 -3.6038 -0.8910 28 1 1.0231 -6.4241 1.3878 29 1 0.2362 -4.8547 1.6578 30 1 1.8979 -5.1429 3.3552 31 1 2.4679 -3.8989 2.2350 32 1 3.3410 -6.8013 2.1577 33 1 4.2386 -5.4948 2.9611 34 1 5.2740 -5.5748 0.8533 35 1 4.0518 -4.3002 0.6103 36 1 5.3103 -7.3704 -0.6156 37 1 5.3450 -9.1134 -2.2966 38 1 4.0098 -9.4733 -3.2507 39 1 1.9167 -8.2814 -3.0557 40 1 0.6321 -6.5060 -1.9321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710965290.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:03 Heat of formation + Delta-G solvation = 22.042388 kcal Electronic energy + Delta-G solvation = -19865.579045 eV Core-core repulsion = 17065.317387 eV Total energy + Delta-G solvation = -2800.261658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77720 -38.86035 -35.54087 -35.00840 -34.52006 -32.42041 -31.41739 -29.73907 -27.66692 -25.89527 -25.15337 -23.66149 -22.91019 -21.32596 -20.15936 -18.59596 -18.02950 -17.71345 -17.15478 -16.74782 -16.44269 -15.73597 -15.26251 -14.95274 -14.38165 -14.30697 -14.26875 -14.16135 -13.78772 -13.64900 -13.34432 -13.18747 -12.76332 -12.73871 -12.62334 -12.27125 -11.93102 -11.88065 -11.46832 -11.33135 -11.23922 -11.06286 -10.82770 -10.48677 -9.59260 -9.11883 -8.23053 -8.14432 -6.27955 0.56058 0.70437 1.41006 1.42927 1.53710 2.42339 2.95179 3.06105 3.16762 3.22395 3.78080 3.91544 4.08999 4.13189 4.18886 4.37275 4.43002 4.55640 4.61790 4.68034 4.69917 4.84498 4.93429 4.96618 5.05663 5.09784 5.17129 5.25721 5.28558 5.41023 5.43157 5.48186 5.55571 5.69675 5.83179 5.89646 5.95675 6.16448 6.38721 6.60154 6.82063 6.89833 7.10074 7.41145 8.95927 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.005185 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.927989 B = 5399.026669 C = 5613.252716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.043 3.957 10 C 0.062 3.938 11 N -0.506 5.506 12 C 0.065 3.935 13 C -0.162 4.162 14 C -0.099 4.099 15 C -0.114 4.114 16 C -0.066 4.066 17 C -0.195 4.195 18 C 0.210 3.790 19 N -0.869 5.869 20 C -0.200 4.200 21 C -0.066 4.066 22 C 0.013 3.987 23 H 0.263 0.737 24 H -0.019 1.019 25 H -0.009 1.009 26 H 0.078 0.922 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.137 0.863 37 H 0.406 0.594 38 H 0.406 0.594 39 H 0.140 0.860 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.111 -18.477 -0.173 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.005 3.995 10 C -0.064 4.064 11 N -0.226 5.226 12 C -0.062 4.062 13 C -0.201 4.201 14 C -0.137 4.137 15 C -0.150 4.150 16 C -0.068 4.068 17 C -0.219 4.219 18 C 0.105 3.895 19 N -0.410 5.410 20 C -0.224 4.224 21 C -0.085 4.085 22 C -0.082 4.082 23 H 0.071 0.929 24 H 0.000 1.000 25 H 0.009 0.991 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.155 0.845 37 H 0.235 0.765 38 H 0.236 0.764 39 H 0.157 0.843 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.484 -18.276 -0.408 20.594 hybrid contribution 0.589 0.826 0.076 1.018 sum 10.073 -17.449 -0.331 20.151 Atomic orbital electron populations 1.70129 1.07890 1.27644 1.51618 1.25950 0.95688 1.03242 0.94692 0.85460 0.78767 0.78453 0.78431 1.19969 1.20692 1.18466 1.21603 0.93424 0.92201 1.50645 0.92210 1.18845 0.94164 0.91996 0.94490 1.22645 0.95643 0.87806 1.00284 1.60346 1.43414 1.01707 1.17097 1.21831 0.97788 1.00095 0.86481 1.21727 0.96566 1.01298 1.00492 1.21201 0.95905 1.00105 0.96444 1.21457 1.00171 1.00181 0.93232 1.20261 0.93992 0.96060 0.96520 1.20565 1.00907 0.99733 1.00663 1.17856 0.91068 0.89064 0.91536 1.42417 1.16036 1.38729 1.43783 1.20662 0.93974 1.02609 1.05106 1.20977 0.99783 0.94034 0.93729 1.18752 0.92425 0.97105 0.99968 0.92854 1.00025 0.99091 0.90443 0.94132 0.90860 0.92336 0.90125 0.92242 0.91578 0.89871 0.89346 0.90275 0.84539 0.76488 0.76439 0.84252 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.50 13.29 21.44 0.28 -58.22 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.54 -31.69 9.11 25.60 0.23 -31.45 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.04 2.40 5.21 29.85 0.16 2.56 16 10 C 0.06 2.79 2.85 86.30 0.25 3.03 16 11 N -0.51 -20.14 4.64 -697.91 -3.24 -23.38 16 12 C 0.06 2.25 5.77 85.90 0.50 2.75 16 13 C -0.16 -4.98 5.18 29.77 0.15 -4.83 16 14 C -0.10 -2.54 5.67 30.25 0.17 -2.37 16 15 C -0.11 -3.21 5.44 30.15 0.16 -3.04 16 16 C -0.07 -1.98 4.81 -19.75 -0.10 -2.08 16 17 C -0.20 -4.86 9.53 22.42 0.21 -4.64 16 18 C 0.21 4.77 6.76 38.16 0.26 5.03 16 19 N -0.87 -12.47 9.10 -51.16 -0.47 -12.93 16 20 C -0.20 -5.04 9.88 22.39 0.22 -4.82 16 21 C -0.07 -2.07 9.97 22.44 0.22 -1.84 16 22 C 0.01 0.45 4.28 37.81 0.16 0.61 16 23 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 24 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 25 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 26 H 0.08 3.27 2.63 -2.38 -0.01 3.26 16 27 H 0.04 1.89 7.57 -2.38 -0.02 1.87 16 28 H 0.07 2.30 7.76 -2.39 -0.02 2.28 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 2.17 5.61 -2.39 -0.01 2.15 16 32 H 0.07 1.61 7.88 -2.39 -0.02 1.59 16 33 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.09 2.04 7.92 -2.39 -0.02 2.02 16 35 H 0.08 2.67 4.21 -2.39 -0.01 2.66 16 36 H 0.14 2.71 7.97 -2.91 -0.02 2.69 16 37 H 0.41 4.26 8.84 -92.71 -0.82 3.44 16 38 H 0.41 4.26 8.84 -92.71 -0.82 3.44 16 39 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -69.51 309.90 1.09 -68.42 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.58 Total: 19.51 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 3.07 Total: -40.53 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -3.42 Total: -94.53 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.51 1.09 -68.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710965290.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.467 kcal (2) G-P(sol) polarization free energy of solvation -69.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds