Wall clock time and date at job start Mon Mar 30 2020 06:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38127 * 120.03727 * 2 1 4 4 C 1.38265 * 120.07114 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.15464 * 359.95737 * 4 3 2 6 6 C 1.50692 * 119.96560 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47085 * 90.00380 * 6 5 4 8 8 C 1.46897 * 111.00069 * 190.00266 * 7 6 5 9 9 C 1.50707 * 109.47009 * 162.85082 * 8 7 6 10 10 H 1.07997 * 120.00256 * 4.64765 * 9 8 7 11 11 C 1.37882 * 119.99756 * 184.65594 * 9 8 7 12 12 N 1.31517 * 120.00092 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99642 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47477 * 59.99508 * 13 11 9 15 15 H 1.48507 * 109.46952 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47018 * 299.99057 * 13 11 9 17 17 C 1.46905 * 110.99966 * 66.04578 * 7 6 5 18 18 C 1.52995 * 117.49759 * 127.43346 * 17 7 6 19 19 C 1.52999 * 117.49974 * 58.80974 * 17 7 6 20 20 C 1.38090 * 120.07103 * 0.02562 * 5 4 3 21 21 C 1.38893 * 120.03807 * 179.73002 * 2 1 3 22 22 N 1.39678 * 120.07105 * 0.02562 * 21 2 1 23 23 H 1.08999 * 109.47550 * 89.99622 * 1 2 3 24 24 H 1.09005 * 109.46907 * 329.99600 * 1 2 3 25 25 H 1.09002 * 109.47159 * 210.00117 * 1 2 3 26 26 H 1.07991 * 119.96177 * 359.97438 * 3 2 1 27 27 H 1.08003 * 119.92335 * 179.97438 * 4 3 2 28 28 H 1.09003 * 109.47470 * 209.99950 * 6 5 4 29 29 H 1.08998 * 109.47641 * 330.00551 * 6 5 4 30 30 H 1.09007 * 109.47251 * 282.84526 * 8 7 6 31 31 H 1.08993 * 109.47708 * 42.84925 * 8 7 6 32 32 H 0.97000 * 119.99868 * 180.02562 * 12 11 9 33 33 H 1.09003 * 115.54898 * 273.13634 * 17 7 6 34 34 H 1.09001 * 117.50043 * 0.02562 * 18 17 7 35 35 H 1.08993 * 117.50209 * 145.01973 * 18 17 7 36 36 H 1.08993 * 117.49961 * 214.98101 * 19 17 7 37 37 H 1.09004 * 117.49529 * 359.97438 * 19 17 7 38 38 H 1.08003 * 120.03309 * 180.02562 * 20 5 4 39 39 H 0.97000 * 120.00313 * 359.97438 * 22 21 2 40 40 H 0.97000 * 119.99359 * 180.02562 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 -0.0005 5 6 4.2765 0.0011 -0.0002 6 6 5.7834 0.0070 -0.0014 7 7 6.2741 0.0098 1.3833 8 6 7.7220 0.2537 1.4282 9 6 8.1190 0.6657 2.8224 10 1 7.3853 0.6667 3.6148 11 6 9.4191 1.0416 3.0862 12 7 10.3128 1.0402 2.1213 13 14 9.9113 1.5516 4.8145 14 1 9.6661 0.4261 5.7516 15 1 11.3533 1.9063 4.8341 16 1 9.1062 2.7277 5.2317 17 6 5.9300 -1.2444 2.0664 18 6 7.0638 -2.0096 2.7517 19 6 6.4517 -2.5471 1.4566 20 6 3.5915 -1.1979 0.0002 21 6 2.2022 -1.2024 0.0057 22 7 1.5061 -2.4133 0.0108 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 0.8900 0.5139 25 1 -0.3633 -0.8900 0.5139 26 1 1.6584 2.1310 -0.0004 27 1 4.1192 2.1330 -0.0010 28 1 6.1499 -0.8820 -0.5148 29 1 6.1429 0.8980 -0.5160 30 1 8.2528 -0.6581 1.1538 31 1 7.9786 1.0482 0.7276 32 1 11.2275 1.3043 2.3071 33 1 4.9484 -1.2679 2.5397 34 1 8.0650 -1.5822 2.6962 35 1 6.8284 -2.5367 3.6762 36 1 5.8135 -3.4277 1.5291 37 1 7.0499 -2.4734 0.5483 38 1 4.1352 -2.1311 0.0009 39 1 0.5361 -2.4152 0.0108 40 1 1.9928 -3.2524 0.0152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714044431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:10 Heat of formation + Delta-G solvation = 55.957386 kcal Electronic energy + Delta-G solvation = -19453.218395 eV Core-core repulsion = 16654.427401 eV Total energy + Delta-G solvation = -2798.790993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.54608 -38.04040 -34.72397 -33.12245 -32.83510 -31.50931 -28.75101 -28.16046 -26.19462 -23.69988 -22.65772 -22.20890 -21.39876 -20.34298 -18.73361 -16.91255 -16.50412 -15.94413 -15.81312 -15.15176 -14.74112 -14.18851 -13.96632 -13.77958 -13.49867 -13.43674 -12.73441 -12.39414 -12.11036 -12.08207 -11.94035 -11.45453 -11.10946 -10.94096 -10.86357 -10.74580 -10.51515 -10.28249 -10.18672 -9.88534 -9.67994 -9.29400 -9.16008 -8.41963 -8.28393 -7.25710 -7.15353 -5.99110 -3.98400 1.70597 1.96032 3.36660 3.40485 3.44256 3.97245 4.11345 4.47357 4.63423 5.02529 5.06532 5.11440 5.35672 5.36607 5.40389 5.59209 5.69205 5.73459 5.75266 5.80400 5.87106 5.92099 5.96459 6.20721 6.24927 6.30269 6.39942 6.60349 6.65736 6.75888 6.86054 7.10978 7.16522 7.20034 7.27318 7.42424 7.67139 7.83354 7.87244 8.13399 8.25850 8.57120 9.09049 9.63701 11.11129 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.029697 B = 0.004848 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.616253 B = 5773.931409 C = 6114.481579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.178 4.178 3 C -0.078 4.078 4 C -0.152 4.152 5 C -0.016 4.016 6 C 0.090 3.910 7 N -0.498 5.498 8 C 0.186 3.814 9 C -0.494 4.494 10 H 0.064 0.936 11 C 0.054 3.946 12 N -0.901 5.901 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.044 3.956 18 C -0.173 4.173 19 C -0.232 4.232 20 C -0.182 4.182 21 C 0.209 3.791 22 N -0.884 5.884 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.034 0.966 29 H 0.077 0.923 30 H -0.004 1.004 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.393 0.607 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.319 -5.454 -5.171 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.183 4.183 3 C -0.097 4.097 4 C -0.173 4.173 5 C -0.017 4.017 6 C -0.037 4.037 7 N -0.220 5.220 8 C 0.062 3.938 9 C -0.532 4.532 10 H 0.082 0.918 11 C -0.147 4.147 12 N -0.541 5.541 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.065 4.065 18 C -0.210 4.210 19 C -0.271 4.271 20 C -0.205 4.205 21 C 0.106 3.894 22 N -0.424 5.424 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.014 0.986 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.151 0.849 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.222 0.778 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -16.312 -4.952 -4.960 17.754 hybrid contribution 0.614 -0.764 0.553 1.125 sum -15.698 -5.716 -4.407 17.278 Atomic orbital electron populations 1.20522 0.92076 1.01810 1.01234 1.19232 0.95169 0.92030 1.11834 1.20712 0.94090 0.96392 0.98462 1.20812 0.93528 0.97834 1.05109 1.19630 0.95429 0.92267 0.94394 1.21069 0.90188 1.00755 0.91707 1.62210 1.18728 1.29513 1.11592 1.19885 0.80121 0.95636 0.98188 1.21085 0.94287 1.43333 0.94540 0.91817 1.24965 0.96593 0.95979 0.97145 1.69948 1.03289 1.48903 1.31928 0.86591 0.77141 0.79161 0.84712 1.20291 1.21499 1.20221 1.22486 0.97510 0.85218 1.01313 1.23532 1.01719 1.01797 0.93991 1.23313 1.06087 0.99147 0.98540 1.20475 0.91485 0.98366 1.10207 1.17518 0.91132 0.85836 0.94962 1.42471 1.08591 1.05129 1.86258 0.92250 0.91886 0.92758 0.86688 0.86302 0.94839 0.90499 0.98617 0.95081 0.92939 0.88001 0.84878 0.90291 0.90351 0.89783 0.86535 0.77827 0.77809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.58 36.00 0.34 -0.62 16 2 C -0.18 -2.32 5.90 -104.42 -0.62 -2.94 16 3 C -0.08 -1.08 9.70 -39.61 -0.38 -1.46 16 4 C -0.15 -2.41 9.70 -39.55 -0.38 -2.80 16 5 C -0.02 -0.27 5.03 -104.66 -0.53 -0.79 16 6 C 0.09 1.69 5.01 -4.98 -0.02 1.66 16 7 N -0.50 -10.82 4.66 -229.52 -1.07 -11.89 16 8 C 0.19 4.76 4.27 -4.97 -0.02 4.74 16 9 C -0.49 -13.59 6.85 -34.44 -0.24 -13.83 16 10 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 11 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 12 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 13 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.04 0.88 4.77 -67.71 -0.32 0.56 16 18 C -0.17 -3.51 8.87 -26.73 -0.24 -3.74 16 19 C -0.23 -4.11 8.69 -26.73 -0.23 -4.35 16 20 C -0.18 -2.75 8.68 -39.38 -0.34 -3.10 16 21 C 0.21 2.79 6.73 -83.79 -0.56 2.23 16 22 N -0.88 -8.77 8.99 32.41 0.29 -8.48 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 25 H 0.05 0.46 6.53 -51.93 -0.34 0.12 16 26 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 28 H 0.03 0.61 6.80 -51.93 -0.35 0.26 16 29 H 0.08 1.44 7.79 -51.93 -0.40 1.03 16 30 H 0.00 -0.10 6.03 -51.93 -0.31 -0.42 16 31 H 0.03 0.86 7.78 -51.93 -0.40 0.45 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.10 1.98 8.12 -51.93 -0.42 1.56 16 34 H 0.13 3.18 4.91 -51.93 -0.25 2.93 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.57 7.14 -51.93 -0.37 1.20 16 38 H 0.12 1.71 7.44 -52.48 -0.39 1.32 16 39 H 0.39 3.13 6.82 -40.82 -0.28 2.86 16 40 H 0.39 3.38 8.84 -40.82 -0.36 3.02 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -29.69 319.98 -9.85 -39.55 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.97 Total: 8.05 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -3.64 Total: -23.02 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.04 Total: -46.02 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.69 -9.85 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714044431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.503 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds