Wall clock time and date at job start Mon Mar 30 2020 06:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38127 * 120.03727 * 2 1 4 4 C 1.38265 * 120.07114 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.15464 * 359.95737 * 4 3 2 6 6 C 1.50692 * 119.96560 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47085 * 90.00380 * 6 5 4 8 8 C 1.46897 * 111.00069 * 190.00266 * 7 6 5 9 9 C 1.50707 * 109.47009 * 162.85082 * 8 7 6 10 10 H 1.07997 * 120.00256 * 4.64765 * 9 8 7 11 11 C 1.37882 * 119.99756 * 184.65594 * 9 8 7 12 12 N 1.31517 * 120.00092 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99642 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47477 * 59.99508 * 13 11 9 15 15 H 1.48507 * 109.46952 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47018 * 299.99057 * 13 11 9 17 17 C 1.46905 * 110.99966 * 66.04578 * 7 6 5 18 18 C 1.52995 * 117.49759 * 127.43346 * 17 7 6 19 19 C 1.52999 * 117.49974 * 58.80974 * 17 7 6 20 20 C 1.38090 * 120.07103 * 0.02562 * 5 4 3 21 21 C 1.38893 * 120.03807 * 179.73002 * 2 1 3 22 22 N 1.39678 * 120.07105 * 0.02562 * 21 2 1 23 23 H 1.08999 * 109.47550 * 89.99622 * 1 2 3 24 24 H 1.09005 * 109.46907 * 329.99600 * 1 2 3 25 25 H 1.09002 * 109.47159 * 210.00117 * 1 2 3 26 26 H 1.07991 * 119.96177 * 359.97438 * 3 2 1 27 27 H 1.08003 * 119.92335 * 179.97438 * 4 3 2 28 28 H 1.09003 * 109.47470 * 209.99950 * 6 5 4 29 29 H 1.08998 * 109.47641 * 330.00551 * 6 5 4 30 30 H 1.09007 * 109.47251 * 282.84526 * 8 7 6 31 31 H 1.08993 * 109.47708 * 42.84925 * 8 7 6 32 32 H 0.97000 * 119.99868 * 180.02562 * 12 11 9 33 33 H 1.09003 * 115.54898 * 273.13634 * 17 7 6 34 34 H 1.09001 * 117.50043 * 0.02562 * 18 17 7 35 35 H 1.08993 * 117.50209 * 145.01973 * 18 17 7 36 36 H 1.08993 * 117.49961 * 214.98101 * 19 17 7 37 37 H 1.09004 * 117.49529 * 359.97438 * 19 17 7 38 38 H 1.08003 * 120.03309 * 180.02562 * 20 5 4 39 39 H 0.97000 * 120.00313 * 359.97438 * 22 21 2 40 40 H 0.97000 * 119.99359 * 180.02562 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 -0.0005 5 6 4.2765 0.0011 -0.0002 6 6 5.7834 0.0070 -0.0014 7 7 6.2741 0.0098 1.3833 8 6 7.7220 0.2537 1.4282 9 6 8.1190 0.6657 2.8224 10 1 7.3853 0.6667 3.6148 11 6 9.4191 1.0416 3.0862 12 7 10.3128 1.0402 2.1213 13 14 9.9113 1.5516 4.8145 14 1 9.6661 0.4261 5.7516 15 1 11.3533 1.9063 4.8341 16 1 9.1062 2.7277 5.2317 17 6 5.9300 -1.2444 2.0664 18 6 7.0638 -2.0096 2.7517 19 6 6.4517 -2.5471 1.4566 20 6 3.5915 -1.1979 0.0002 21 6 2.2022 -1.2024 0.0057 22 7 1.5061 -2.4133 0.0108 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 0.8900 0.5139 25 1 -0.3633 -0.8900 0.5139 26 1 1.6584 2.1310 -0.0004 27 1 4.1192 2.1330 -0.0010 28 1 6.1499 -0.8820 -0.5148 29 1 6.1429 0.8980 -0.5160 30 1 8.2528 -0.6581 1.1538 31 1 7.9786 1.0482 0.7276 32 1 11.2275 1.3043 2.3071 33 1 4.9484 -1.2679 2.5397 34 1 8.0650 -1.5822 2.6962 35 1 6.8284 -2.5367 3.6762 36 1 5.8135 -3.4277 1.5291 37 1 7.0499 -2.4734 0.5483 38 1 4.1352 -2.1311 0.0009 39 1 0.5361 -2.4152 0.0108 40 1 1.9928 -3.2524 0.0152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714044431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:10 Heat of formation + Delta-G solvation = 37.617706 kcal Electronic energy + Delta-G solvation = -19454.013663 eV Core-core repulsion = 16654.427401 eV Total energy + Delta-G solvation = -2799.586261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75858 -39.54503 -35.84605 -34.98637 -34.23515 -32.96088 -29.99799 -29.54814 -27.75758 -25.03409 -24.61931 -23.39759 -22.82319 -21.57326 -20.33907 -18.41423 -17.90412 -17.51840 -17.15795 -16.64923 -16.23569 -15.72254 -15.24874 -15.17355 -14.65202 -14.60772 -14.26596 -13.77840 -13.57316 -13.36268 -13.15240 -12.95571 -12.73911 -12.62113 -12.57499 -12.07927 -12.00083 -11.86065 -11.70141 -11.36180 -11.30360 -11.27425 -10.79170 -10.56637 -9.44143 -8.89589 -8.24000 -8.14489 -6.21793 0.57770 0.84347 1.42400 1.44954 1.52729 2.43181 2.91707 3.10311 3.11937 3.16563 3.50577 3.95083 4.03933 4.14166 4.17463 4.24767 4.29106 4.39572 4.57040 4.65838 4.79029 4.80943 4.89612 4.90940 4.97524 5.06286 5.08256 5.20488 5.21582 5.31563 5.37165 5.52719 5.60474 5.71085 5.77967 5.98290 6.10174 6.13189 6.44546 6.64008 6.71972 6.90998 7.10226 7.44690 8.95123 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.029697 B = 0.004848 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.616253 B = 5773.931409 C = 6114.481579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.179 4.179 3 C -0.080 4.080 4 C -0.175 4.175 5 C -0.034 4.034 6 C 0.096 3.904 7 N -0.509 5.509 8 C 0.205 3.795 9 C -0.499 4.499 10 H 0.057 0.943 11 C 0.004 3.996 12 N -0.936 5.936 13 Si 0.962 3.038 14 H -0.268 1.268 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.039 3.961 18 C -0.188 4.188 19 C -0.201 4.201 20 C -0.191 4.191 21 C 0.210 3.790 22 N -0.869 5.869 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.136 0.864 27 H 0.108 0.892 28 H 0.033 0.967 29 H 0.063 0.937 30 H -0.024 1.024 31 H -0.001 1.001 32 H 0.263 0.737 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.405 0.595 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.059 -6.620 -4.378 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.184 4.184 3 C -0.098 4.098 4 C -0.196 4.196 5 C -0.035 4.035 6 C -0.031 4.031 7 N -0.232 5.232 8 C 0.080 3.920 9 C -0.538 4.538 10 H 0.075 0.925 11 C -0.194 4.194 12 N -0.577 5.577 13 Si 0.787 3.213 14 H -0.193 1.193 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.070 4.070 18 C -0.226 4.226 19 C -0.240 4.240 20 C -0.214 4.214 21 C 0.105 3.895 22 N -0.410 5.410 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.154 0.846 27 H 0.126 0.874 28 H 0.052 0.948 29 H 0.081 0.919 30 H -0.007 1.007 31 H 0.017 0.983 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.236 0.764 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -19.091 -6.152 -4.171 20.487 hybrid contribution 1.364 -0.443 0.243 1.454 sum -17.728 -6.595 -3.928 19.318 Atomic orbital electron populations 1.20594 0.89356 1.03092 1.02488 1.19661 0.97173 0.91445 1.10137 1.20961 0.93222 0.97952 0.97676 1.20852 0.94764 0.97198 1.06745 1.19423 0.93734 0.93534 0.96836 1.21001 0.92190 1.00053 0.89888 1.62085 1.15886 1.31446 1.13737 1.19489 0.82582 0.93446 0.96531 1.21259 0.94381 1.43067 0.95077 0.92452 1.25785 0.96538 0.95948 1.01118 1.70073 1.03617 1.49924 1.34058 0.85548 0.76836 0.78987 0.79934 1.19253 1.21020 1.19728 1.22489 0.97563 0.85185 1.01776 1.23391 0.99759 1.03079 0.96324 1.23289 1.04875 0.99236 0.96571 1.20469 0.92479 0.97666 1.10815 1.17591 0.90666 0.87254 0.93995 1.42423 1.09285 1.04373 1.84965 0.90879 0.90989 0.91206 0.84591 0.87394 0.94841 0.91871 1.00654 0.98308 0.92861 0.86913 0.88976 0.88086 0.86650 0.91067 0.86249 0.76366 0.76802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 9.58 71.23 0.68 -0.84 16 2 C -0.18 -4.18 5.90 -19.73 -0.12 -4.29 16 3 C -0.08 -2.08 9.70 22.25 0.22 -1.87 16 4 C -0.17 -5.58 9.70 22.29 0.22 -5.37 16 5 C -0.03 -1.14 5.03 -19.89 -0.10 -1.24 16 6 C 0.10 3.74 5.01 85.55 0.43 4.17 16 7 N -0.51 -22.88 4.66 -880.06 -4.10 -26.98 16 8 C 0.21 11.05 4.27 85.56 0.37 11.42 16 9 C -0.50 -28.39 6.85 25.60 0.18 -28.21 16 10 H 0.06 3.27 7.80 -2.91 -0.02 3.25 16 11 C 0.00 0.21 5.46 84.66 0.46 0.67 16 12 N -0.94 -56.57 13.29 21.45 0.28 -56.28 16 13 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 C 0.04 1.54 4.77 44.91 0.21 1.75 16 18 C -0.19 -7.60 8.87 30.59 0.27 -7.33 16 19 C -0.20 -6.91 8.69 30.59 0.27 -6.64 16 20 C -0.19 -5.51 8.68 22.40 0.19 -5.31 16 21 C 0.21 5.06 6.73 38.21 0.26 5.32 16 22 N -0.87 -14.15 8.99 -51.37 -0.46 -14.61 16 23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 1.01 8.09 -2.38 -0.02 0.99 16 25 H 0.07 0.87 6.53 -2.39 -0.02 0.85 16 26 H 0.14 2.87 8.06 -2.92 -0.02 2.85 16 27 H 0.11 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.03 1.28 6.80 -2.39 -0.02 1.26 16 29 H 0.06 2.55 7.79 -2.39 -0.02 2.53 16 30 H -0.02 -1.37 6.03 -2.38 -0.01 -1.38 16 31 H 0.00 -0.07 7.78 -2.39 -0.02 -0.09 16 32 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.11 4.22 8.12 -2.39 -0.02 4.20 16 34 H 0.09 4.56 4.91 -2.39 -0.01 4.55 16 35 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.07 2.65 7.14 -2.38 -0.02 2.64 16 38 H 0.12 3.28 7.44 -2.91 -0.02 3.26 16 39 H 0.41 4.79 6.82 -92.71 -0.63 4.16 16 40 H 0.40 5.48 8.84 -92.71 -0.82 4.66 16 Total: -1.00 -65.77 319.98 0.88 -64.89 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -0.40 Total: 23.78 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 3.53 Total: -37.77 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -4.28 Total: -97.88 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.77 0.88 -64.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714044431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.508 kcal (2) G-P(sol) polarization free energy of solvation -65.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds