Wall clock time and date at job start Mon Mar 30 2020 07:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53005 * 109.46715 * 2 1 4 4 H 1.08995 * 109.47116 * 304.85025 * 3 2 1 5 5 N 1.46505 * 109.46842 * 64.84674 * 3 2 1 6 6 C 1.39682 * 119.99854 * 242.35935 * 5 3 2 7 7 C 1.39325 * 119.95425 * 353.58120 * 6 5 3 8 8 C 1.38481 * 120.42680 * 180.02562 * 7 6 5 9 9 C 1.37685 * 120.32208 * 359.97358 * 8 7 6 10 10 C 1.40754 * 119.89524 * 0.02566 * 9 8 7 11 11 C 1.41405 * 120.20663 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99799 * 27.07809 * 11 10 9 13 13 C 1.39929 * 119.99817 * 207.06860 * 11 10 9 14 14 N 1.30832 * 120.00214 * 13.19683 * 13 11 10 15 15 Si 1.86802 * 120.00061 * 193.19168 * 13 11 10 16 16 H 1.48499 * 109.47086 * 90.00572 * 15 13 11 17 17 H 1.48500 * 109.47073 * 210.00370 * 15 13 11 18 18 H 1.48497 * 109.47178 * 330.00671 * 15 13 11 19 19 C 1.38279 * 119.94810 * 173.30540 * 6 5 3 20 20 C 1.52997 * 109.47025 * 184.84554 * 3 2 1 21 21 C 1.53932 * 113.73347 * 83.27243 * 20 3 2 22 22 N 1.47957 * 86.18033 * 138.07881 * 21 20 3 23 23 C 1.47958 * 90.76605 * 335.31224 * 22 21 20 24 24 H 1.08994 * 109.47037 * 63.92461 * 1 2 3 25 25 H 1.08999 * 109.46709 * 183.92103 * 1 2 3 26 26 H 1.08996 * 109.47162 * 303.92004 * 1 2 3 27 27 H 1.09000 * 109.46780 * 240.00353 * 2 1 3 28 28 H 1.08991 * 109.46945 * 120.00029 * 2 1 3 29 29 H 0.97002 * 119.99722 * 62.36184 * 5 3 2 30 30 H 1.08002 * 119.78850 * 0.02562 * 7 6 5 31 31 H 1.08000 * 119.84111 * 180.02562 * 8 7 6 32 32 H 1.08003 * 120.05145 * 180.02562 * 9 8 7 33 33 H 0.96994 * 120.00553 * 179.97438 * 14 13 11 34 34 H 1.08001 * 120.16160 * 359.97438 * 19 6 5 35 35 H 1.09007 * 113.01331 * 311.64242 * 20 3 2 36 36 H 1.08999 * 113.76809 * 252.39873 * 21 20 3 37 37 H 1.09004 * 113.76170 * 23.76497 * 21 20 3 38 38 H 1.00902 * 111.00182 * 222.41652 * 22 21 20 39 39 H 1.09000 * 113.75680 * 270.37192 * 23 22 21 40 40 H 1.09000 * 113.76000 * 139.00023 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6074 1.9808 -0.8433 5 7 1.6492 2.0986 1.2503 6 6 0.7996 3.2070 1.2215 7 6 0.4318 3.7700 0.0014 8 6 -0.4095 4.8693 -0.0386 9 6 -0.8924 5.4178 1.1283 10 6 -0.5295 4.8598 2.3686 11 6 -1.0211 5.4182 3.5711 12 1 -1.9634 5.9460 3.5757 13 6 -0.2869 5.2868 4.7550 14 7 0.9571 4.8837 4.7119 15 14 -1.0827 5.6870 6.3969 16 1 -1.7199 4.4647 6.9491 17 1 -0.0474 6.1759 7.3427 18 1 -2.1133 6.7386 6.2042 19 6 0.3204 3.7403 2.4039 20 6 3.5651 1.4444 -0.1218 21 6 4.0711 1.3195 -1.5703 22 7 5.0679 2.3505 -1.2062 23 6 4.1843 2.8537 -0.1315 24 1 -0.3633 0.4517 -0.9230 25 1 -0.3633 -1.0253 0.0703 26 1 -0.3633 0.5735 0.8527 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.9805 1.7632 2.0981 30 1 0.8051 3.3465 -0.9193 31 1 -0.6889 5.2979 -0.9897 32 1 -1.5486 6.2749 1.0921 33 1 1.4662 4.7930 5.5325 34 1 0.6010 3.3017 3.3501 35 1 4.0489 0.7574 0.5725 36 1 4.5082 0.3479 -1.8007 37 1 3.3498 1.6505 -2.3175 38 1 5.1671 3.0335 -1.9423 39 1 3.4961 3.6335 -0.4578 40 1 4.7118 3.1078 0.7879 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716114245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:18 Heat of formation + Delta-G solvation = 43.525725 kcal Electronic energy + Delta-G solvation = -19613.845988 eV Core-core repulsion = 16814.515918 eV Total energy + Delta-G solvation = -2799.330070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.70691 -37.68601 -35.56463 -33.48731 -31.93994 -29.42774 -29.02375 -26.89713 -25.79719 -25.22716 -24.02630 -21.58224 -20.66008 -19.72851 -19.31072 -17.25192 -16.50070 -15.73460 -15.46718 -14.96985 -14.65446 -14.43531 -13.87999 -13.35004 -13.04558 -12.87318 -12.60178 -12.38585 -12.23212 -12.03491 -11.70544 -11.43664 -11.22391 -11.05499 -10.85143 -10.76366 -10.63146 -10.60291 -10.26505 -10.15501 -9.60271 -9.41237 -9.23076 -8.95510 -8.66845 -7.27343 -6.68392 -6.12624 -4.31400 2.88059 3.11248 3.14766 3.23590 3.33903 3.99751 4.13245 4.23568 4.70160 4.75193 4.91871 5.30025 5.33032 5.42428 5.50869 5.54480 5.69204 5.77423 5.83918 5.96769 6.03574 6.08653 6.15067 6.18644 6.28407 6.30415 6.41224 6.60483 6.64685 6.89779 7.12222 7.16159 7.26446 7.41071 7.46147 7.83135 7.95885 8.12232 8.20168 8.51949 8.73706 8.86743 9.03182 9.13273 10.30323 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022852 B = 0.005341 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.969480 B = 5241.254482 C = 5368.879217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.160 3.840 4 H 0.089 0.911 5 N -0.749 5.749 6 C 0.221 3.779 7 C -0.300 4.300 8 C -0.068 4.068 9 C -0.257 4.257 10 C 0.139 3.861 11 C -0.465 4.465 12 H 0.075 0.925 13 C 0.076 3.924 14 N -0.798 5.798 15 Si 0.906 3.094 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.264 1.264 19 C -0.226 4.226 20 C -0.125 4.125 21 C 0.011 3.989 22 N -0.642 5.642 23 C 0.021 3.979 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.389 0.611 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.276 0.724 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.314 0.686 39 H 0.073 0.927 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.712 -7.438 -7.134 10.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C 0.052 3.948 4 H 0.106 0.894 5 N -0.380 5.380 6 C 0.122 3.878 7 C -0.323 4.323 8 C -0.086 4.086 9 C -0.277 4.277 10 C 0.136 3.864 11 C -0.495 4.495 12 H 0.093 0.907 13 C -0.140 4.140 14 N -0.424 5.424 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.188 1.188 19 C -0.250 4.250 20 C -0.145 4.145 21 C -0.120 4.120 22 N -0.267 5.267 23 C -0.109 4.109 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.222 0.778 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.091 0.909 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.583 -7.892 -6.783 11.371 hybrid contribution -0.840 0.595 0.638 1.211 sum 3.743 -7.297 -6.145 10.248 Atomic orbital electron populations 1.21685 0.95416 1.00640 1.02704 1.21921 0.96699 0.97132 1.01295 1.20879 0.91371 0.92610 0.89919 0.89357 1.44361 1.54534 1.33074 1.06040 1.17610 0.89750 0.86279 0.94135 1.19890 1.13091 1.04988 0.94288 1.20274 0.96809 0.95403 0.96158 1.20883 1.10251 1.03760 0.92824 1.17337 0.88664 0.88602 0.91783 1.19557 1.06096 1.31564 0.92331 0.90730 1.25847 0.94188 0.93097 1.00881 1.69837 1.07451 1.35482 1.29616 0.86358 0.79781 0.79559 0.81222 1.19480 1.20461 1.18761 1.20772 1.08365 1.00824 0.95059 1.23444 0.96483 0.97842 0.96710 1.23692 0.94023 0.97820 0.96506 1.66897 1.36613 1.12292 1.10861 1.23589 0.94291 0.96530 0.96536 0.93174 0.93714 0.91562 0.92120 0.92308 0.77790 0.89747 0.89831 0.89503 0.91292 0.86462 0.88924 0.89903 0.91722 0.87380 0.90909 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.85 37.16 0.37 -1.67 16 2 C -0.13 -1.67 5.61 -26.72 -0.15 -1.82 16 3 C 0.16 2.29 2.06 -67.93 -0.14 2.15 16 4 H 0.09 1.38 5.10 -51.93 -0.26 1.11 16 5 N -0.75 -13.24 4.22 -52.22 -0.22 -13.46 16 6 C 0.22 4.85 6.63 -83.86 -0.56 4.30 16 7 C -0.30 -6.48 9.31 -39.09 -0.36 -6.85 16 8 C -0.07 -1.52 10.02 -39.69 -0.40 -1.92 16 9 C -0.26 -6.40 9.79 -38.83 -0.38 -6.79 16 10 C 0.14 3.73 5.56 -106.85 -0.59 3.14 16 11 C -0.47 -12.50 9.06 -37.74 -0.34 -12.84 16 12 H 0.07 1.94 7.88 -52.49 -0.41 1.53 16 13 C 0.08 1.94 5.21 -17.34 -0.09 1.85 16 14 N -0.80 -20.70 10.88 55.55 0.60 -20.09 16 15 Si 0.91 18.98 29.58 -169.99 -5.03 13.95 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 19 C -0.23 -5.75 8.51 -38.68 -0.33 -6.07 16 20 C -0.12 -1.63 3.50 -89.69 -0.31 -1.95 16 21 C 0.01 0.12 8.46 -2.77 -0.02 0.10 16 22 N -0.64 -8.26 8.53 -117.04 -1.00 -9.26 16 23 C 0.02 0.30 8.23 -2.77 -0.02 0.27 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.10 7.64 -51.93 -0.40 0.70 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.39 6.81 8.84 -40.82 -0.36 6.45 16 30 H 0.08 1.64 5.74 -52.49 -0.30 1.34 16 31 H 0.08 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 33 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 34 H 0.12 3.11 6.20 -52.49 -0.33 2.78 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.70 7.96 -51.93 -0.41 0.28 16 38 H 0.31 3.60 8.91 -39.29 -0.35 3.25 16 39 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -27.01 324.10 -10.28 -37.29 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -6.19 Total: 14.78 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -3.34 Total: -28.10 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.61 Total: -42.81 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.01 -10.28 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716114245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.820 kcal (2) G-P(sol) polarization free energy of solvation -27.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds