Wall clock time and date at job start Mon Mar 30 2020 07:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53005 * 109.46715 * 2 1 4 4 H 1.08995 * 109.47116 * 304.85025 * 3 2 1 5 5 N 1.46505 * 109.46842 * 64.84674 * 3 2 1 6 6 C 1.39682 * 119.99854 * 242.35935 * 5 3 2 7 7 C 1.39325 * 119.95425 * 353.58120 * 6 5 3 8 8 C 1.38481 * 120.42680 * 180.02562 * 7 6 5 9 9 C 1.37685 * 120.32208 * 359.97358 * 8 7 6 10 10 C 1.40754 * 119.89524 * 0.02566 * 9 8 7 11 11 C 1.41405 * 120.20663 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99799 * 27.07809 * 11 10 9 13 13 C 1.39929 * 119.99817 * 207.06860 * 11 10 9 14 14 N 1.30832 * 120.00214 * 13.19683 * 13 11 10 15 15 Si 1.86802 * 120.00061 * 193.19168 * 13 11 10 16 16 H 1.48499 * 109.47086 * 90.00572 * 15 13 11 17 17 H 1.48500 * 109.47073 * 210.00370 * 15 13 11 18 18 H 1.48497 * 109.47178 * 330.00671 * 15 13 11 19 19 C 1.38279 * 119.94810 * 173.30540 * 6 5 3 20 20 C 1.52997 * 109.47025 * 184.84554 * 3 2 1 21 21 C 1.53932 * 113.73347 * 83.27243 * 20 3 2 22 22 N 1.47957 * 86.18033 * 138.07881 * 21 20 3 23 23 C 1.47958 * 90.76605 * 335.31224 * 22 21 20 24 24 H 1.08994 * 109.47037 * 63.92461 * 1 2 3 25 25 H 1.08999 * 109.46709 * 183.92103 * 1 2 3 26 26 H 1.08996 * 109.47162 * 303.92004 * 1 2 3 27 27 H 1.09000 * 109.46780 * 240.00353 * 2 1 3 28 28 H 1.08991 * 109.46945 * 120.00029 * 2 1 3 29 29 H 0.97002 * 119.99722 * 62.36184 * 5 3 2 30 30 H 1.08002 * 119.78850 * 0.02562 * 7 6 5 31 31 H 1.08000 * 119.84111 * 180.02562 * 8 7 6 32 32 H 1.08003 * 120.05145 * 180.02562 * 9 8 7 33 33 H 0.96994 * 120.00553 * 179.97438 * 14 13 11 34 34 H 1.08001 * 120.16160 * 359.97438 * 19 6 5 35 35 H 1.09007 * 113.01331 * 311.64242 * 20 3 2 36 36 H 1.08999 * 113.76809 * 252.39873 * 21 20 3 37 37 H 1.09004 * 113.76170 * 23.76497 * 21 20 3 38 38 H 1.00902 * 111.00182 * 222.41652 * 22 21 20 39 39 H 1.09000 * 113.75680 * 270.37192 * 23 22 21 40 40 H 1.09000 * 113.76000 * 139.00023 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6074 1.9808 -0.8433 5 7 1.6492 2.0986 1.2503 6 6 0.7996 3.2070 1.2215 7 6 0.4318 3.7700 0.0014 8 6 -0.4095 4.8693 -0.0386 9 6 -0.8924 5.4178 1.1283 10 6 -0.5295 4.8598 2.3686 11 6 -1.0211 5.4182 3.5711 12 1 -1.9634 5.9460 3.5757 13 6 -0.2869 5.2868 4.7550 14 7 0.9571 4.8837 4.7119 15 14 -1.0827 5.6870 6.3969 16 1 -1.7199 4.4647 6.9491 17 1 -0.0474 6.1759 7.3427 18 1 -2.1133 6.7386 6.2042 19 6 0.3204 3.7403 2.4039 20 6 3.5651 1.4444 -0.1218 21 6 4.0711 1.3195 -1.5703 22 7 5.0679 2.3505 -1.2062 23 6 4.1843 2.8537 -0.1315 24 1 -0.3633 0.4517 -0.9230 25 1 -0.3633 -1.0253 0.0703 26 1 -0.3633 0.5735 0.8527 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.9805 1.7632 2.0981 30 1 0.8051 3.3465 -0.9193 31 1 -0.6889 5.2979 -0.9897 32 1 -1.5486 6.2749 1.0921 33 1 1.4662 4.7930 5.5325 34 1 0.6010 3.3017 3.3501 35 1 4.0489 0.7574 0.5725 36 1 4.5082 0.3479 -1.8007 37 1 3.3498 1.6505 -2.3175 38 1 5.1671 3.0335 -1.9423 39 1 3.4961 3.6335 -0.4578 40 1 4.7118 3.1078 0.7879 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716114245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:17 Heat of formation + Delta-G solvation = 27.087251 kcal Electronic energy + Delta-G solvation = -19614.558814 eV Core-core repulsion = 16814.515918 eV Total energy + Delta-G solvation = -2800.042896 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86655 -39.34680 -36.99871 -35.29897 -33.39499 -31.31782 -30.31526 -28.39358 -27.13324 -26.85254 -25.18944 -23.20002 -22.19968 -21.31259 -20.45558 -19.07550 -17.78219 -17.29130 -16.80430 -16.40213 -16.28924 -15.96924 -15.15656 -14.71096 -14.56908 -14.26242 -14.01870 -13.92154 -13.54725 -13.46125 -13.21068 -13.01509 -12.76815 -12.59209 -12.40523 -12.16056 -11.91189 -11.79965 -11.65570 -11.52367 -11.36889 -11.16467 -11.01665 -10.44534 -9.87222 -9.18919 -8.57163 -7.81531 -6.31610 1.10669 1.37212 1.38471 1.50737 1.59014 2.23924 2.78016 2.86618 3.18507 3.61161 3.75955 3.89516 4.19655 4.30951 4.35080 4.43783 4.51304 4.52481 4.56705 4.80739 4.84265 4.89385 4.93336 5.00469 5.03745 5.12439 5.13701 5.21859 5.22684 5.34783 5.35357 5.48995 5.52664 5.65473 5.99912 6.13626 6.25135 6.30002 6.31830 6.63015 6.98893 7.09291 7.12313 7.30219 8.42548 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022852 B = 0.005341 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.969480 B = 5241.254482 C = 5368.879217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.160 3.840 4 H 0.082 0.918 5 N -0.741 5.741 6 C 0.234 3.766 7 C -0.297 4.297 8 C -0.065 4.065 9 C -0.286 4.286 10 C 0.108 3.892 11 C -0.505 4.505 12 H 0.068 0.932 13 C 0.036 3.964 14 N -0.827 5.827 15 Si 0.979 3.021 16 H -0.263 1.263 17 H -0.269 1.269 18 H -0.261 1.261 19 C -0.254 4.254 20 C -0.118 4.118 21 C 0.021 3.979 22 N -0.646 5.646 23 C 0.016 3.984 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.389 0.611 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.283 0.717 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.323 0.677 39 H 0.055 0.945 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 -9.018 -8.476 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.055 3.945 4 H 0.100 0.900 5 N -0.371 5.371 6 C 0.132 3.868 7 C -0.319 4.319 8 C -0.084 4.084 9 C -0.307 4.307 10 C 0.105 3.895 11 C -0.536 4.536 12 H 0.086 0.914 13 C -0.178 4.178 14 N -0.453 5.453 15 Si 0.800 3.200 16 H -0.188 1.188 17 H -0.193 1.193 18 H -0.185 1.185 19 C -0.278 4.278 20 C -0.138 4.138 21 C -0.109 4.109 22 N -0.271 5.271 23 C -0.115 4.115 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.222 0.778 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.136 0.864 39 H 0.074 0.926 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.353 -9.505 -8.160 13.622 hybrid contribution -0.993 1.009 0.907 1.681 sum 4.359 -8.496 -7.253 11.991 Atomic orbital electron populations 1.21661 0.96358 1.01188 1.01102 1.21876 0.95685 0.95775 1.02968 1.21066 0.92366 0.93386 0.87729 0.89976 1.44457 1.53149 1.31800 1.07645 1.17634 0.89070 0.86744 0.93313 1.20220 1.12191 1.04389 0.95142 1.20632 0.95879 0.95212 0.96638 1.21018 1.11672 1.04664 0.93366 1.17712 0.89626 0.89450 0.92671 1.19788 1.06604 1.33346 0.93837 0.91402 1.26646 0.94467 0.92576 1.04075 1.69905 1.08518 1.36094 1.30824 0.85263 0.78861 0.79419 0.76461 1.18823 1.19343 1.18531 1.20680 1.10008 1.01598 0.95556 1.23381 0.95115 0.96899 0.98454 1.23741 0.93684 0.98290 0.95198 1.66874 1.36605 1.12758 1.10912 1.23471 0.94473 0.96965 0.96584 0.93133 0.91902 0.95013 0.89119 0.91866 0.77767 0.86846 0.86707 0.89635 0.90692 0.88406 0.88523 0.87966 0.90465 0.86368 0.92634 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.85 71.99 0.71 -3.02 16 2 C -0.12 -2.76 5.61 30.60 0.17 -2.58 16 3 C 0.16 4.24 2.06 44.99 0.09 4.33 16 4 H 0.08 2.30 5.10 -2.39 -0.01 2.29 16 5 N -0.74 -25.80 4.22 -319.12 -1.35 -27.14 16 6 C 0.23 10.34 6.63 38.16 0.25 10.59 16 7 C -0.30 -12.51 9.31 22.59 0.21 -12.30 16 8 C -0.06 -2.89 10.02 22.20 0.22 -2.67 16 9 C -0.29 -14.72 9.79 22.75 0.22 -14.50 16 10 C 0.11 6.07 5.56 -21.31 -0.12 5.95 16 11 C -0.51 -28.50 9.06 23.46 0.21 -28.28 16 12 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 13 C 0.04 1.89 5.21 85.25 0.44 2.33 16 14 N -0.83 -44.40 10.88 21.82 0.24 -44.16 16 15 Si 0.98 39.81 29.58 68.60 2.03 41.84 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 19 C -0.25 -13.42 8.51 22.86 0.19 -13.23 16 20 C -0.12 -2.80 3.50 -10.15 -0.04 -2.84 16 21 C 0.02 0.41 8.46 86.41 0.73 1.14 16 22 N -0.65 -15.04 8.53 -524.21 -4.47 -19.51 16 23 C 0.02 0.43 8.23 86.41 0.71 1.14 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.03 1.02 7.64 -2.39 -0.02 1.00 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.39 13.63 8.84 -92.71 -0.82 12.81 16 30 H 0.11 4.10 5.74 -2.91 -0.02 4.09 16 31 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.09 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 34 H 0.10 5.46 6.20 -2.91 -0.02 5.44 16 35 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.33 7.96 -2.38 -0.02 1.31 16 38 H 0.32 6.64 8.91 -89.69 -0.80 5.84 16 39 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -60.67 324.10 -0.11 -60.78 By element: Atomic # 1 Polarization: 42.70 SS G_CDS: -0.58 Total: 42.13 kcal Atomic # 6 Polarization: -57.95 SS G_CDS: 4.02 Total: -53.93 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -5.58 Total: -90.81 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -60.67 -0.11 -60.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716114245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.865 kcal (2) G-P(sol) polarization free energy of solvation -60.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds