Wall clock time and date at job start Mon Mar 30 2020 07:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46936 * 2 1 4 4 H 1.09002 * 109.46906 * 54.90036 * 3 2 1 5 5 N 1.46493 * 109.47042 * 294.89334 * 3 2 1 6 6 C 1.38858 * 119.99997 * 119.50519 * 5 3 2 7 7 C 1.39561 * 119.84333 * 7.28038 * 6 5 3 8 8 C 1.36336 * 120.16374 * 179.72038 * 7 6 5 9 9 C 1.40885 * 119.83509 * 0.55280 * 8 7 6 10 10 C 1.41136 * 120.15915 * 179.69899 * 9 8 7 11 11 H 1.07995 * 120.00417 * 152.51839 * 10 9 8 12 12 C 1.39873 * 119.99540 * 332.51692 * 10 9 8 13 13 N 1.30900 * 120.00389 * 342.79772 * 12 10 9 14 14 Si 1.86806 * 119.99767 * 162.80082 * 12 10 9 15 15 H 1.48499 * 109.47142 * 94.97473 * 14 12 10 16 16 H 1.48501 * 109.46887 * 214.97916 * 14 12 10 17 17 H 1.48503 * 109.46977 * 334.97482 * 14 12 10 18 18 C 1.40888 * 119.68933 * 359.72594 * 9 8 7 19 19 C 1.36342 * 119.83271 * 359.97438 * 18 9 8 20 20 C 1.53002 * 109.46879 * 174.89490 * 3 2 1 21 21 C 1.53940 * 113.73300 * 278.76419 * 20 3 2 22 22 N 1.48186 * 86.10064 * 221.95796 * 21 20 3 23 23 C 1.47962 * 90.79989 * 24.60071 * 22 21 20 24 24 H 1.09001 * 109.47364 * 305.38526 * 1 2 3 25 25 H 1.08998 * 109.47321 * 65.38720 * 1 2 3 26 26 H 1.09005 * 109.47017 * 185.38515 * 1 2 3 27 27 H 1.08994 * 109.47070 * 239.99715 * 2 1 3 28 28 H 1.09000 * 109.46826 * 119.99736 * 2 1 3 29 29 H 0.97006 * 119.99967 * 299.50397 * 5 3 2 30 30 H 1.08006 * 119.92105 * 359.97438 * 7 6 5 31 31 H 1.08006 * 120.08502 * 180.27561 * 8 7 6 32 32 H 0.96994 * 120.00517 * 180.02562 * 13 12 10 33 33 H 1.07995 * 120.08552 * 179.97438 * 18 9 8 34 34 H 1.08004 * 119.91521 * 179.97438 * 19 18 9 35 35 H 1.09000 * 112.93718 * 50.32963 * 20 3 2 36 36 H 1.09001 * 113.75988 * 336.24004 * 21 20 3 37 37 H 1.09010 * 113.75631 * 107.60215 * 21 20 3 38 38 H 1.00903 * 111.06950 * 137.51980 * 22 21 20 39 39 H 1.09001 * 113.75789 * 221.08399 * 23 22 21 40 40 H 1.08996 * 113.85608 * 89.72871 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6039 1.9820 0.8408 5 7 1.6546 2.0967 -1.2528 6 6 0.8413 3.2219 -1.2270 7 6 0.5175 3.8169 -0.0068 8 6 -0.2758 4.9252 0.0258 9 6 -0.7785 5.4629 -1.1755 10 6 -1.6055 6.6063 -1.1492 11 1 -1.6335 7.2721 -1.9990 12 6 -2.3889 6.8769 -0.0225 13 7 -2.6241 5.9330 0.8533 14 14 -3.0995 8.5856 0.2324 15 1 -4.4838 8.6310 -0.3032 16 1 -3.1193 8.9021 1.6831 17 1 -2.2601 9.5821 -0.4802 18 6 -0.4522 4.8535 -2.4032 19 6 0.3472 3.7492 -2.4210 20 6 3.5646 1.4444 0.1284 21 6 4.0649 1.2719 1.5739 22 7 5.0604 2.3198 1.2472 23 6 4.1798 2.8544 0.1851 24 1 -0.3634 0.5951 0.8378 25 1 -0.3634 0.4280 -0.9343 26 1 -0.3633 -1.0232 0.0965 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.9676 1.7438 -2.1005 30 1 0.8997 3.4008 0.9137 31 1 -0.5219 5.3873 0.9705 32 1 -3.1676 6.1205 1.6345 33 1 -0.8344 5.2601 -3.3278 34 1 0.5978 3.2808 -3.3613 35 1 4.0519 0.7815 -0.5866 36 1 3.3395 1.5753 2.3289 37 1 4.5039 0.2941 1.7730 38 1 5.1546 2.9795 2.0049 39 1 4.7105 3.1388 -0.7235 40 1 3.4876 3.6219 0.5312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716147434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:20 Heat of formation + Delta-G solvation = 46.534737 kcal Electronic energy + Delta-G solvation = -19493.800753 eV Core-core repulsion = 16694.601163 eV Total energy + Delta-G solvation = -2799.199590 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.73946 -37.81519 -35.64681 -33.50096 -31.69280 -29.51344 -29.10609 -27.76905 -25.88038 -24.71547 -23.69010 -21.82424 -20.72861 -19.79759 -19.27070 -17.21708 -16.56971 -16.12477 -15.51296 -15.02175 -14.83475 -13.94476 -13.92383 -13.40584 -13.05995 -12.78121 -12.63799 -12.41512 -12.25246 -11.93482 -11.83643 -11.55280 -11.24448 -11.10478 -10.98291 -10.78840 -10.63673 -10.52107 -10.41517 -10.28257 -9.69498 -9.30496 -9.20751 -8.93331 -8.47841 -7.51318 -6.63313 -6.35982 -4.03985 2.91078 3.07950 3.14717 3.19845 3.33854 4.05866 4.11362 4.20359 4.66381 4.75260 4.90774 5.27884 5.31170 5.40716 5.47758 5.51181 5.67769 5.75539 5.80959 5.95072 5.96389 6.04406 6.12410 6.15299 6.25781 6.28429 6.31167 6.48299 6.60956 6.90809 6.94345 7.19423 7.22633 7.35587 7.55538 7.67969 7.82158 8.14485 8.28838 8.50317 8.70174 8.80864 9.06033 9.14647 10.38885 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.005002 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.779524 B = 5596.103307 C = 5857.616505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.162 3.838 4 H 0.088 0.912 5 N -0.750 5.750 6 C 0.102 3.898 7 C -0.167 4.167 8 C -0.120 4.120 9 C 0.075 3.925 10 C -0.470 4.470 11 H 0.072 0.928 12 C 0.076 3.924 13 N -0.811 5.811 14 Si 0.900 3.100 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.263 1.263 18 C -0.183 4.183 19 C -0.161 4.161 20 C -0.124 4.124 21 C 0.010 3.990 22 N -0.643 5.643 23 C 0.020 3.980 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.383 0.617 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.275 0.725 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.315 0.685 39 H 0.082 0.918 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.120 -8.266 1.694 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.054 3.946 4 H 0.105 0.895 5 N -0.383 5.383 6 C 0.005 3.995 7 C -0.189 4.189 8 C -0.140 4.140 9 C 0.072 3.928 10 C -0.501 4.501 11 H 0.090 0.910 12 C -0.139 4.139 13 N -0.438 5.438 14 Si 0.725 3.275 15 H -0.199 1.199 16 H -0.203 1.203 17 H -0.187 1.187 18 C -0.204 4.204 19 C -0.183 4.183 20 C -0.145 4.145 21 C -0.121 4.121 22 N -0.267 5.267 23 C -0.110 4.110 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.215 0.785 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.638 -8.688 1.706 12.370 hybrid contribution -1.124 1.047 0.350 1.576 sum 7.513 -7.642 2.057 10.912 Atomic orbital electron populations 1.21662 0.95301 1.00348 1.02951 1.21917 0.96730 0.97137 1.01209 1.20850 0.91280 0.92593 0.89849 0.89463 1.43797 1.57740 1.31296 1.05449 1.17301 0.98118 0.90406 0.93693 1.20083 1.05054 0.99629 0.94126 1.20852 0.97592 0.96636 0.98923 1.17473 0.91930 0.92785 0.90590 1.19341 1.21873 1.07869 1.01061 0.91027 1.25762 0.95153 0.97728 0.95244 1.69846 1.30999 1.32431 1.10568 0.86441 0.79520 0.83392 0.78124 1.19878 1.20329 1.18690 1.20578 1.04507 0.97948 0.97330 1.19829 1.03958 1.00037 0.94475 1.23455 0.96674 0.97548 0.96780 1.23737 0.94055 0.97684 0.96639 1.66924 1.36829 1.11719 1.11274 1.23579 0.94382 0.96513 0.96523 0.92816 0.92020 0.93761 0.92446 0.92119 0.78471 0.89539 0.86919 0.91413 0.89138 0.89650 0.89051 0.91581 0.89867 0.87280 0.90004 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.74 37.16 0.36 -1.66 16 2 C -0.13 -1.61 5.60 -26.73 -0.15 -1.76 16 3 C 0.16 2.23 2.01 -67.93 -0.14 2.09 16 4 H 0.09 1.37 5.13 -51.93 -0.27 1.10 16 5 N -0.75 -11.99 4.41 -52.04 -0.23 -12.22 16 6 C 0.10 2.08 6.65 -83.69 -0.56 1.52 16 7 C -0.17 -3.72 9.21 -39.77 -0.37 -4.09 16 8 C -0.12 -3.07 8.61 -39.27 -0.34 -3.41 16 9 C 0.08 2.00 5.54 -106.79 -0.59 1.41 16 10 C -0.47 -12.72 9.02 -37.87 -0.34 -13.06 16 11 H 0.07 1.88 7.90 -52.49 -0.41 1.47 16 12 C 0.08 1.96 5.12 -17.34 -0.09 1.87 16 13 N -0.81 -21.49 11.12 55.54 0.62 -20.87 16 14 Si 0.90 19.22 29.59 -169.99 -5.03 14.19 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 18 C -0.18 -4.48 9.74 -39.26 -0.38 -4.86 16 19 C -0.16 -3.50 9.83 -39.77 -0.39 -3.89 16 20 C -0.12 -1.53 3.49 -89.68 -0.31 -1.84 16 21 C 0.01 0.11 8.44 -2.63 -0.02 0.09 16 22 N -0.64 -7.91 8.53 -116.83 -1.00 -8.91 16 23 C 0.02 0.27 8.27 -2.76 -0.02 0.25 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.98 7.91 -51.93 -0.41 0.57 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.38 5.64 8.84 -40.82 -0.36 5.28 16 30 H 0.09 1.76 5.76 -52.48 -0.30 1.46 16 31 H 0.11 3.01 6.36 -52.48 -0.33 2.68 16 32 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 33 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 34 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.71 7.99 -51.93 -0.41 0.30 16 37 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 38 H 0.32 3.51 8.92 -39.29 -0.35 3.16 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 LS Contribution 324.52 15.07 4.89 4.89 Total: -1.00 -27.16 324.52 -10.30 -37.46 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -6.21 Total: 12.80 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -3.34 Total: -27.34 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.61 Total: -42.00 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.16 -10.30 -37.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716147434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.994 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds