Wall clock time and date at job start Mon Mar 30 2020 07:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46936 * 2 1 4 4 H 1.09002 * 109.46906 * 54.90036 * 3 2 1 5 5 N 1.46493 * 109.47042 * 294.89334 * 3 2 1 6 6 C 1.38858 * 119.99997 * 119.50519 * 5 3 2 7 7 C 1.39561 * 119.84333 * 7.28038 * 6 5 3 8 8 C 1.36336 * 120.16374 * 179.72038 * 7 6 5 9 9 C 1.40885 * 119.83509 * 0.55280 * 8 7 6 10 10 C 1.41136 * 120.15915 * 179.69899 * 9 8 7 11 11 H 1.07995 * 120.00417 * 152.51839 * 10 9 8 12 12 C 1.39873 * 119.99540 * 332.51692 * 10 9 8 13 13 N 1.30900 * 120.00389 * 342.79772 * 12 10 9 14 14 Si 1.86806 * 119.99767 * 162.80082 * 12 10 9 15 15 H 1.48499 * 109.47142 * 94.97473 * 14 12 10 16 16 H 1.48501 * 109.46887 * 214.97916 * 14 12 10 17 17 H 1.48503 * 109.46977 * 334.97482 * 14 12 10 18 18 C 1.40888 * 119.68933 * 359.72594 * 9 8 7 19 19 C 1.36342 * 119.83271 * 359.97438 * 18 9 8 20 20 C 1.53002 * 109.46879 * 174.89490 * 3 2 1 21 21 C 1.53940 * 113.73300 * 278.76419 * 20 3 2 22 22 N 1.48186 * 86.10064 * 221.95796 * 21 20 3 23 23 C 1.47962 * 90.79989 * 24.60071 * 22 21 20 24 24 H 1.09001 * 109.47364 * 305.38526 * 1 2 3 25 25 H 1.08998 * 109.47321 * 65.38720 * 1 2 3 26 26 H 1.09005 * 109.47017 * 185.38515 * 1 2 3 27 27 H 1.08994 * 109.47070 * 239.99715 * 2 1 3 28 28 H 1.09000 * 109.46826 * 119.99736 * 2 1 3 29 29 H 0.97006 * 119.99967 * 299.50397 * 5 3 2 30 30 H 1.08006 * 119.92105 * 359.97438 * 7 6 5 31 31 H 1.08006 * 120.08502 * 180.27561 * 8 7 6 32 32 H 0.96994 * 120.00517 * 180.02562 * 13 12 10 33 33 H 1.07995 * 120.08552 * 179.97438 * 18 9 8 34 34 H 1.08004 * 119.91521 * 179.97438 * 19 18 9 35 35 H 1.09000 * 112.93718 * 50.32963 * 20 3 2 36 36 H 1.09001 * 113.75988 * 336.24004 * 21 20 3 37 37 H 1.09010 * 113.75631 * 107.60215 * 21 20 3 38 38 H 1.00903 * 111.06950 * 137.51980 * 22 21 20 39 39 H 1.09001 * 113.75789 * 221.08399 * 23 22 21 40 40 H 1.08996 * 113.85608 * 89.72871 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6039 1.9820 0.8408 5 7 1.6546 2.0967 -1.2528 6 6 0.8413 3.2219 -1.2270 7 6 0.5175 3.8169 -0.0068 8 6 -0.2758 4.9252 0.0258 9 6 -0.7785 5.4629 -1.1755 10 6 -1.6055 6.6063 -1.1492 11 1 -1.6335 7.2721 -1.9990 12 6 -2.3889 6.8769 -0.0225 13 7 -2.6241 5.9330 0.8533 14 14 -3.0995 8.5856 0.2324 15 1 -4.4838 8.6310 -0.3032 16 1 -3.1193 8.9021 1.6831 17 1 -2.2601 9.5821 -0.4802 18 6 -0.4522 4.8535 -2.4032 19 6 0.3472 3.7492 -2.4210 20 6 3.5646 1.4444 0.1284 21 6 4.0649 1.2719 1.5739 22 7 5.0604 2.3198 1.2472 23 6 4.1798 2.8544 0.1851 24 1 -0.3634 0.5951 0.8378 25 1 -0.3634 0.4280 -0.9343 26 1 -0.3633 -1.0232 0.0965 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.9676 1.7438 -2.1005 30 1 0.8997 3.4008 0.9137 31 1 -0.5219 5.3873 0.9705 32 1 -3.1676 6.1205 1.6345 33 1 -0.8344 5.2601 -3.3278 34 1 0.5978 3.2808 -3.3613 35 1 4.0519 0.7815 -0.5866 36 1 3.3395 1.5753 2.3289 37 1 4.5039 0.2941 1.7730 38 1 5.1546 2.9795 2.0049 39 1 4.7105 3.1388 -0.7235 40 1 3.4876 3.6219 0.5312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716147434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:20 Heat of formation + Delta-G solvation = 29.884941 kcal Electronic energy + Delta-G solvation = -19494.522742 eV Core-core repulsion = 16694.601163 eV Total energy + Delta-G solvation = -2799.921579 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86704 -39.45399 -37.06574 -35.22925 -33.19068 -31.35517 -30.56248 -29.21322 -26.88600 -26.29466 -25.04448 -23.39342 -22.34471 -21.22971 -20.41770 -19.13485 -17.92526 -17.40879 -16.89995 -16.55465 -16.12975 -15.64167 -15.16897 -14.71337 -14.48090 -14.26459 -14.02488 -13.93127 -13.58713 -13.51542 -13.28776 -13.07048 -12.76867 -12.70185 -12.42356 -12.26406 -11.85280 -11.77094 -11.74837 -11.52117 -11.41594 -11.04474 -11.00630 -10.26270 -9.85964 -9.37847 -8.53069 -8.07806 -5.99138 1.12696 1.20485 1.39377 1.51891 1.59027 2.27816 2.84375 2.87649 3.19246 3.61559 3.78827 3.87989 4.18262 4.31456 4.35696 4.44397 4.46267 4.52665 4.53600 4.65228 4.84210 4.89632 4.91980 5.03533 5.03976 5.12497 5.12989 5.16465 5.24665 5.29776 5.40082 5.46953 5.48340 5.72919 5.84937 5.98303 6.20782 6.28005 6.42257 6.70598 6.92202 7.10667 7.19163 7.37679 8.50833 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024517 B = 0.005002 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.779524 B = 5596.103307 C = 5857.616505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.161 3.839 4 H 0.068 0.932 5 N -0.737 5.737 6 C 0.132 3.868 7 C -0.174 4.174 8 C -0.137 4.137 9 C 0.033 3.967 10 C -0.510 4.510 11 H 0.065 0.935 12 C 0.033 3.967 13 N -0.846 5.846 14 Si 0.972 3.028 15 H -0.266 1.266 16 H -0.269 1.269 17 H -0.262 1.262 18 C -0.192 4.192 19 C -0.170 4.170 20 C -0.114 4.114 21 C 0.016 3.984 22 N -0.647 5.647 23 C 0.016 3.984 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.395 0.605 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.281 0.719 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.322 0.678 39 H 0.076 0.924 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.491 -10.092 1.755 13.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.054 3.946 4 H 0.086 0.914 5 N -0.370 5.370 6 C 0.033 3.967 7 C -0.196 4.196 8 C -0.157 4.157 9 C 0.030 3.970 10 C -0.541 4.541 11 H 0.083 0.917 12 C -0.178 4.178 13 N -0.475 5.475 14 Si 0.794 3.206 15 H -0.191 1.191 16 H -0.193 1.193 17 H -0.186 1.186 18 C -0.212 4.212 19 C -0.193 4.193 20 C -0.134 4.134 21 C -0.115 4.115 22 N -0.271 5.271 23 C -0.115 4.115 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.230 0.770 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.044 -10.560 1.763 14.680 hybrid contribution -1.404 1.418 0.298 2.018 sum 8.640 -9.141 2.060 12.746 Atomic orbital electron populations 1.21649 0.96725 1.01052 1.00789 1.21860 0.95243 0.95867 1.03162 1.20979 0.92470 0.93266 0.87836 0.91364 1.43831 1.56237 1.29702 1.07245 1.17328 0.96363 0.90449 0.92589 1.20212 1.04697 0.98948 0.95761 1.20765 0.99036 0.98060 0.97842 1.17776 0.93429 0.93957 0.91794 1.19554 1.23613 1.08894 1.02061 0.91716 1.26540 0.95165 1.01485 0.94588 1.69911 1.32045 1.34279 1.11238 0.85353 0.78744 0.78207 0.78308 1.19102 1.19347 1.18596 1.20766 1.04943 0.98761 0.96764 1.20112 1.03488 0.99431 0.96234 1.23371 0.95021 0.96867 0.98120 1.23787 0.93761 0.98210 0.95730 1.66922 1.36756 1.12066 1.11398 1.23495 0.94458 0.96741 0.96798 0.94639 0.94427 0.91753 0.90849 0.89719 0.77047 0.87848 0.89079 0.90929 0.88910 0.86639 0.87778 0.91250 0.87961 0.86574 0.90502 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.74 71.98 0.70 -3.03 16 2 C -0.12 -2.56 5.60 30.60 0.17 -2.39 16 3 C 0.16 4.01 2.01 44.99 0.09 4.10 16 4 H 0.07 2.02 5.13 -2.39 -0.01 2.00 16 5 N -0.74 -21.87 4.41 -318.55 -1.40 -23.27 16 6 C 0.13 5.29 6.65 38.67 0.26 5.55 16 7 C -0.17 -7.83 9.21 22.15 0.20 -7.63 16 8 C -0.14 -7.29 8.61 22.47 0.19 -7.10 16 9 C 0.03 1.85 5.54 -21.27 -0.12 1.73 16 10 C -0.51 -28.90 9.02 23.38 0.21 -28.69 16 11 H 0.06 3.58 7.90 -2.91 -0.02 3.56 16 12 C 0.03 1.78 5.12 85.23 0.44 2.22 16 13 N -0.85 -46.63 11.12 21.82 0.24 -46.39 16 14 Si 0.97 40.58 29.59 68.60 2.03 42.61 16 15 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 16 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 18 C -0.19 -9.58 9.74 22.48 0.22 -9.36 16 19 C -0.17 -7.27 9.83 22.15 0.22 -7.05 16 20 C -0.11 -2.44 3.49 -10.15 -0.04 -2.47 16 21 C 0.02 0.30 8.44 86.37 0.73 1.03 16 22 N -0.65 -14.39 8.53 -523.53 -4.47 -18.85 16 23 C 0.02 0.39 8.27 86.41 0.72 1.11 16 24 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.04 1.13 7.91 -2.39 -0.02 1.11 16 26 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 29 H 0.40 10.31 8.84 -92.70 -0.82 9.49 16 30 H 0.10 4.23 5.76 -2.91 -0.02 4.21 16 31 H 0.09 5.16 6.36 -2.91 -0.02 5.14 16 32 H 0.28 14.10 8.30 -92.71 -0.77 13.33 16 33 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 1.30 7.99 -2.39 -0.02 1.28 16 37 H 0.10 1.62 8.14 -2.38 -0.02 1.61 16 38 H 0.32 6.58 8.92 -89.69 -0.80 5.78 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -60.97 324.52 -0.18 -61.16 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.58 Total: 36.74 kcal Atomic # 6 Polarization: -55.98 SS G_CDS: 3.99 Total: -51.99 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -5.63 Total: -88.52 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -60.97 -0.18 -61.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716147434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.043 kcal (2) G-P(sol) polarization free energy of solvation -60.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds