Wall clock time and date at job start Mon Mar 30 2020 07:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 H 1.08996 * 109.46955 * 304.99337 * 3 2 1 5 5 N 1.46502 * 109.47163 * 65.00064 * 3 2 1 6 6 C 1.38855 * 119.99548 * 248.26477 * 5 3 2 7 7 C 1.39570 * 119.84563 * 359.72834 * 6 5 3 8 8 C 1.36339 * 120.16125 * 179.71915 * 7 6 5 9 9 C 1.40891 * 119.83506 * 0.55255 * 8 7 6 10 10 C 1.41130 * 120.15372 * 179.70090 * 9 8 7 11 11 H 1.08006 * 119.99927 * 157.51869 * 10 9 8 12 12 C 1.39869 * 120.00287 * 337.51917 * 10 9 8 13 13 N 1.30908 * 119.99585 * 337.37917 * 12 10 9 14 14 Si 1.86793 * 120.00205 * 157.38402 * 12 10 9 15 15 H 1.48502 * 109.47150 * 94.96207 * 14 12 10 16 16 H 1.48504 * 109.47209 * 214.95955 * 14 12 10 17 17 H 1.48503 * 109.47279 * 334.96120 * 14 12 10 18 18 C 1.40885 * 119.68989 * 359.71885 * 9 8 7 19 19 C 1.36339 * 119.83725 * 0.02562 * 18 9 8 20 20 C 1.53003 * 109.46784 * 184.99981 * 3 2 1 21 21 C 1.53934 * 113.73469 * 161.70662 * 20 3 2 22 22 N 1.47960 * 86.17938 * 221.92057 * 21 20 3 23 23 C 1.47959 * 90.76692 * 24.68595 * 22 21 20 24 24 H 1.09000 * 109.47137 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47673 * 300.00451 * 1 2 3 26 26 H 1.09002 * 109.47200 * 59.99979 * 1 2 3 27 27 H 1.09000 * 109.47489 * 240.00066 * 2 1 3 28 28 H 1.08997 * 109.46844 * 119.99377 * 2 1 3 29 29 H 0.96995 * 119.99801 * 68.26887 * 5 3 2 30 30 H 1.07997 * 119.91312 * 359.97438 * 7 6 5 31 31 H 1.08000 * 120.08136 * 180.27647 * 8 7 6 32 32 H 0.97000 * 119.99787 * 179.97438 * 13 12 10 33 33 H 1.07997 * 120.08302 * 180.02562 * 18 9 8 34 34 H 1.08002 * 119.92254 * 179.97438 * 19 18 9 35 35 H 1.09007 * 112.93566 * 293.40709 * 20 3 2 36 36 H 1.09005 * 113.75701 * 336.23305 * 21 20 3 37 37 H 1.08996 * 113.76588 * 107.60106 * 21 20 3 38 38 H 1.00907 * 110.99785 * 271.79196 * 22 21 20 39 39 H 1.08999 * 113.76209 * 221.00036 * 23 22 21 40 40 H 1.08997 * 113.75635 * 89.62828 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6523 2.0975 1.2518 6 6 0.7132 3.1203 1.2384 7 6 0.1448 3.5255 0.0298 8 6 -0.7821 4.5251 0.0098 9 6 -1.1572 5.1573 1.2117 10 6 -2.1114 6.1971 1.1980 11 1 -2.6649 6.4339 2.0946 12 6 -2.3402 6.9209 0.0232 13 7 -1.4200 6.9672 -0.9067 14 14 -3.9586 7.8217 -0.2186 15 1 -3.8053 9.2371 0.2041 16 1 -4.3434 7.7722 -1.6520 17 1 -5.0138 7.1722 0.5999 18 6 -0.5751 4.7469 2.4272 19 6 0.3467 3.7423 2.4328 20 6 3.5648 1.4444 -0.1257 21 6 4.1475 2.7953 -0.5784 22 7 5.0459 2.0041 -1.4479 23 6 4.0767 0.8863 -1.4659 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8932 -0.5137 0.8900 29 1 2.0518 1.8168 2.0899 30 1 0.4370 3.0432 -0.8913 31 1 -1.2243 4.8346 -0.9256 32 1 -1.5788 7.4688 -1.7216 33 1 -0.8583 5.2268 3.3523 34 1 0.7941 3.4269 3.3638 35 1 4.0633 1.0195 0.7456 36 1 3.4402 3.4168 -1.1276 37 1 4.6665 3.3369 0.2124 38 1 5.8882 1.7444 -0.9566 39 1 4.5390 -0.0973 -1.3841 40 1 3.3486 0.9495 -2.2747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716147435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:22 Heat of formation + Delta-G solvation = 51.636759 kcal Electronic energy + Delta-G solvation = -19449.898782 eV Core-core repulsion = 16650.920432 eV Total energy + Delta-G solvation = -2798.978350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.86614 -37.86567 -35.65196 -33.49137 -31.67003 -29.45935 -29.09763 -27.66230 -25.93965 -24.57106 -23.54758 -21.77212 -20.85711 -20.04096 -19.39647 -17.21824 -16.55041 -16.17069 -15.44228 -14.94460 -14.55183 -13.95806 -13.88537 -13.47724 -13.08400 -12.71992 -12.59495 -12.49373 -12.14680 -12.01289 -11.78776 -11.69166 -11.53109 -11.07189 -11.01671 -10.90830 -10.62495 -10.54669 -10.41875 -10.28804 -9.71465 -9.25648 -9.19990 -8.66899 -8.33728 -7.47999 -6.68580 -6.36778 -3.99743 2.91875 3.11194 3.15366 3.20210 3.37197 4.00735 4.05553 4.22277 4.61477 4.72936 4.83812 5.19383 5.30212 5.41191 5.43541 5.55304 5.69566 5.76270 5.83590 5.88132 5.99248 6.00681 6.11871 6.17875 6.26641 6.28749 6.31911 6.48566 6.63342 6.94260 6.96922 7.21130 7.27414 7.35846 7.58491 7.70207 7.85050 8.16139 8.31292 8.52221 8.71947 8.82443 9.06551 9.16981 10.34339 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.004891 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.382140 B = 5723.458960 C = 6019.358385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.164 3.836 4 H 0.090 0.910 5 N -0.751 5.751 6 C 0.094 3.906 7 C -0.162 4.162 8 C -0.129 4.129 9 C 0.076 3.924 10 C -0.469 4.469 11 H 0.072 0.928 12 C 0.079 3.921 13 N -0.801 5.801 14 Si 0.897 3.103 15 H -0.273 1.273 16 H -0.277 1.277 17 H -0.262 1.262 18 C -0.190 4.190 19 C -0.158 4.158 20 C -0.165 4.165 21 C 0.031 3.969 22 N -0.665 5.665 23 C 0.024 3.976 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.381 0.619 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.277 0.723 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.331 0.669 39 H 0.068 0.932 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.302 -10.738 -0.442 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.056 3.944 4 H 0.108 0.892 5 N -0.384 5.384 6 C -0.002 4.002 7 C -0.183 4.183 8 C -0.149 4.149 9 C 0.073 3.927 10 C -0.500 4.500 11 H 0.090 0.910 12 C -0.138 4.138 13 N -0.427 5.427 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.211 4.211 19 C -0.181 4.181 20 C -0.186 4.186 21 C -0.099 4.099 22 N -0.291 5.291 23 C -0.106 4.106 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.213 0.787 30 H 0.107 0.893 31 H 0.132 0.868 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.145 0.855 39 H 0.086 0.914 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.332 -10.259 -1.641 12.716 hybrid contribution -0.505 -0.068 1.179 1.285 sum 6.827 -10.327 -0.462 12.388 Atomic orbital electron populations 1.21675 0.95323 1.00359 1.02974 1.21952 0.96827 0.97446 1.00948 1.20803 0.91206 0.92440 0.89926 0.89214 1.43818 1.48031 1.40275 1.06297 1.17284 0.95805 0.93360 0.93774 1.20090 1.02304 1.01659 0.94268 1.20873 0.99245 0.95767 0.98976 1.17466 0.92070 0.92386 0.90755 1.19351 1.19497 1.14540 0.96620 0.90954 1.25789 0.96934 0.95563 0.95472 1.69892 1.31626 1.33723 1.07474 0.86489 0.83288 0.79745 0.78272 1.19848 1.20230 1.18602 1.20496 1.01519 1.01550 0.97486 1.19793 1.02937 1.00918 0.94415 1.24605 0.98325 0.97406 0.98230 1.23599 0.95593 0.95443 0.95261 1.65091 1.04921 1.12471 1.46636 1.23627 0.95687 0.94596 0.96709 0.93883 0.91701 0.92924 0.92252 0.92721 0.78703 0.89347 0.86780 0.91278 0.89251 0.89817 0.89727 0.88146 0.91283 0.85498 0.91352 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.80 37.16 0.36 -1.66 16 2 C -0.13 -1.62 5.53 -26.73 -0.15 -1.77 16 3 C 0.16 2.27 2.00 -67.93 -0.14 2.13 16 4 H 0.09 1.43 5.21 -51.93 -0.27 1.16 16 5 N -0.75 -12.14 4.52 -52.03 -0.24 -12.37 16 6 C 0.09 1.96 6.44 -83.69 -0.54 1.42 16 7 C -0.16 -3.65 9.22 -39.77 -0.37 -4.01 16 8 C -0.13 -3.32 8.67 -39.26 -0.34 -3.66 16 9 C 0.08 2.05 5.58 -106.79 -0.60 1.45 16 10 C -0.47 -12.76 9.01 -37.87 -0.34 -13.10 16 11 H 0.07 1.91 7.94 -52.48 -0.42 1.49 16 12 C 0.08 2.03 5.04 -17.33 -0.09 1.94 16 13 N -0.80 -21.21 11.12 55.54 0.62 -20.59 16 14 Si 0.90 19.17 29.61 -169.99 -5.03 14.13 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 18 C -0.19 -4.69 9.74 -39.26 -0.38 -5.07 16 19 C -0.16 -3.49 9.82 -39.77 -0.39 -3.88 16 20 C -0.16 -1.94 3.55 -89.69 -0.32 -2.26 16 21 C 0.03 0.41 8.46 -2.77 -0.02 0.38 16 22 N -0.67 -7.95 8.55 -117.03 -1.00 -8.95 16 23 C 0.02 0.26 7.65 -2.77 -0.02 0.24 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 1.05 7.54 -51.93 -0.39 0.66 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.64 7.46 -51.93 -0.39 0.25 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.38 5.65 8.83 -40.82 -0.36 5.29 16 30 H 0.09 1.84 5.72 -52.49 -0.30 1.54 16 31 H 0.11 3.08 6.18 -52.49 -0.32 2.75 16 32 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 33 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.08 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 1.56 8.03 -51.93 -0.42 1.14 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.33 3.32 8.89 -39.29 -0.35 2.97 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -27.41 322.81 -10.27 -37.68 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -6.15 Total: 13.09 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -3.33 Total: -27.85 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.62 Total: -41.92 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.41 -10.27 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716147435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.320 kcal (2) G-P(sol) polarization free energy of solvation -27.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds