Wall clock time and date at job start Mon Mar 30 2020 07:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 H 1.08996 * 109.46955 * 304.99337 * 3 2 1 5 5 N 1.46502 * 109.47163 * 65.00064 * 3 2 1 6 6 C 1.38855 * 119.99548 * 248.26477 * 5 3 2 7 7 C 1.39570 * 119.84563 * 359.72834 * 6 5 3 8 8 C 1.36339 * 120.16125 * 179.71915 * 7 6 5 9 9 C 1.40891 * 119.83506 * 0.55255 * 8 7 6 10 10 C 1.41130 * 120.15372 * 179.70090 * 9 8 7 11 11 H 1.08006 * 119.99927 * 157.51869 * 10 9 8 12 12 C 1.39869 * 120.00287 * 337.51917 * 10 9 8 13 13 N 1.30908 * 119.99585 * 337.37917 * 12 10 9 14 14 Si 1.86793 * 120.00205 * 157.38402 * 12 10 9 15 15 H 1.48502 * 109.47150 * 94.96207 * 14 12 10 16 16 H 1.48504 * 109.47209 * 214.95955 * 14 12 10 17 17 H 1.48503 * 109.47279 * 334.96120 * 14 12 10 18 18 C 1.40885 * 119.68989 * 359.71885 * 9 8 7 19 19 C 1.36339 * 119.83725 * 0.02562 * 18 9 8 20 20 C 1.53003 * 109.46784 * 184.99981 * 3 2 1 21 21 C 1.53934 * 113.73469 * 161.70662 * 20 3 2 22 22 N 1.47960 * 86.17938 * 221.92057 * 21 20 3 23 23 C 1.47959 * 90.76692 * 24.68595 * 22 21 20 24 24 H 1.09000 * 109.47137 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47673 * 300.00451 * 1 2 3 26 26 H 1.09002 * 109.47200 * 59.99979 * 1 2 3 27 27 H 1.09000 * 109.47489 * 240.00066 * 2 1 3 28 28 H 1.08997 * 109.46844 * 119.99377 * 2 1 3 29 29 H 0.96995 * 119.99801 * 68.26887 * 5 3 2 30 30 H 1.07997 * 119.91312 * 359.97438 * 7 6 5 31 31 H 1.08000 * 120.08136 * 180.27647 * 8 7 6 32 32 H 0.97000 * 119.99787 * 179.97438 * 13 12 10 33 33 H 1.07997 * 120.08302 * 180.02562 * 18 9 8 34 34 H 1.08002 * 119.92254 * 179.97438 * 19 18 9 35 35 H 1.09007 * 112.93566 * 293.40709 * 20 3 2 36 36 H 1.09005 * 113.75701 * 336.23305 * 21 20 3 37 37 H 1.08996 * 113.76588 * 107.60106 * 21 20 3 38 38 H 1.00907 * 110.99785 * 271.79196 * 22 21 20 39 39 H 1.08999 * 113.76209 * 221.00036 * 23 22 21 40 40 H 1.08997 * 113.75635 * 89.62828 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6523 2.0975 1.2518 6 6 0.7132 3.1203 1.2384 7 6 0.1448 3.5255 0.0298 8 6 -0.7821 4.5251 0.0098 9 6 -1.1572 5.1573 1.2117 10 6 -2.1114 6.1971 1.1980 11 1 -2.6649 6.4339 2.0946 12 6 -2.3402 6.9209 0.0232 13 7 -1.4200 6.9672 -0.9067 14 14 -3.9586 7.8217 -0.2186 15 1 -3.8053 9.2371 0.2041 16 1 -4.3434 7.7722 -1.6520 17 1 -5.0138 7.1722 0.5999 18 6 -0.5751 4.7469 2.4272 19 6 0.3467 3.7423 2.4328 20 6 3.5648 1.4444 -0.1257 21 6 4.1475 2.7953 -0.5784 22 7 5.0459 2.0041 -1.4479 23 6 4.0767 0.8863 -1.4659 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8932 -0.5137 0.8900 29 1 2.0518 1.8168 2.0899 30 1 0.4370 3.0432 -0.8913 31 1 -1.2243 4.8346 -0.9256 32 1 -1.5788 7.4688 -1.7216 33 1 -0.8583 5.2268 3.3523 34 1 0.7941 3.4269 3.3638 35 1 4.0633 1.0195 0.7456 36 1 3.4402 3.4168 -1.1276 37 1 4.6665 3.3369 0.2124 38 1 5.8882 1.7444 -0.9566 39 1 4.5390 -0.0973 -1.3841 40 1 3.3486 0.9495 -2.2747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716147435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:22 Heat of formation + Delta-G solvation = 34.438419 kcal Electronic energy + Delta-G solvation = -19450.644557 eV Core-core repulsion = 16650.920432 eV Total energy + Delta-G solvation = -2799.724126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94250 -39.52701 -37.09854 -35.23092 -33.15875 -31.32793 -30.58539 -29.08669 -26.91052 -26.21369 -24.82598 -23.37149 -22.38851 -21.33770 -20.74859 -19.14961 -17.82388 -17.46546 -16.83452 -16.64603 -15.78043 -15.56382 -15.22146 -14.76373 -14.42410 -14.25465 -14.06472 -13.80686 -13.58273 -13.45286 -13.35032 -13.04902 -12.79286 -12.72939 -12.61319 -12.32468 -12.12957 -11.79039 -11.68840 -11.53808 -11.41390 -11.05882 -10.94414 -10.30413 -9.42062 -9.36950 -8.58573 -8.09432 -5.95505 1.13189 1.21081 1.39457 1.51862 1.61205 2.27038 2.82788 2.87512 3.16618 3.55609 3.78510 3.89746 4.18332 4.20578 4.38900 4.45445 4.51737 4.53470 4.61451 4.72695 4.81175 4.83862 4.97110 5.04512 5.06008 5.11046 5.12938 5.16942 5.25926 5.29504 5.37861 5.47429 5.49820 5.73165 5.85714 5.99401 6.21076 6.42462 6.45343 6.70284 6.92713 7.09984 7.20129 7.38918 8.46059 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.004891 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.382140 B = 5723.458960 C = 6019.358385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.161 3.839 4 H 0.066 0.934 5 N -0.739 5.739 6 C 0.125 3.875 7 C -0.169 4.169 8 C -0.147 4.147 9 C 0.036 3.964 10 C -0.510 4.510 11 H 0.066 0.934 12 C 0.037 3.963 13 N -0.836 5.836 14 Si 0.970 3.030 15 H -0.265 1.265 16 H -0.268 1.268 17 H -0.262 1.262 18 C -0.200 4.200 19 C -0.168 4.168 20 C -0.150 4.150 21 C 0.022 3.978 22 N -0.675 5.675 23 C 0.031 3.969 24 H 0.062 0.938 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.394 0.606 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.282 0.718 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.345 0.655 39 H 0.097 0.903 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.696 -12.939 -0.168 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C 0.054 3.946 4 H 0.084 0.916 5 N -0.372 5.372 6 C 0.025 3.975 7 C -0.191 4.191 8 C -0.168 4.168 9 C 0.033 3.967 10 C -0.541 4.541 11 H 0.084 0.916 12 C -0.176 4.176 13 N -0.464 5.464 14 Si 0.792 3.208 15 H -0.190 1.190 16 H -0.192 1.192 17 H -0.186 1.186 18 C -0.220 4.220 19 C -0.190 4.190 20 C -0.171 4.171 21 C -0.108 4.108 22 N -0.302 5.302 23 C -0.099 4.099 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.228 0.772 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.160 0.840 39 H 0.115 0.885 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.773 -12.505 -1.358 15.336 hybrid contribution -0.761 0.447 1.118 1.424 sum 8.012 -12.058 -0.240 14.479 Atomic orbital electron populations 1.21661 0.96760 1.01026 1.00871 1.21881 0.95355 0.96102 1.02899 1.20951 0.92837 0.93065 0.87714 0.91626 1.43850 1.46447 1.38756 1.08110 1.17316 0.94702 0.92821 0.92614 1.20213 1.01885 1.01186 0.95847 1.20796 1.00725 0.97232 0.98000 1.17772 0.93524 0.93508 0.91926 1.19564 1.21042 1.16061 0.97469 0.91613 1.26575 1.00108 0.96153 0.94761 1.69948 1.33371 1.34950 1.08129 0.85384 0.78484 0.78515 0.78433 1.18958 1.19238 1.18555 1.20696 1.02002 1.02325 0.96947 1.20083 1.02454 1.00349 0.96144 1.24525 0.96255 0.96525 0.99758 1.23487 0.95839 0.96091 0.95347 1.65019 1.05543 1.12964 1.46683 1.23651 0.95206 0.95548 0.95491 0.91907 0.94438 0.94360 0.89846 0.91081 0.77172 0.87916 0.88920 0.90734 0.88978 0.86701 0.87678 0.91191 0.91233 0.83962 0.88461 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.80 71.98 0.71 -3.05 16 2 C -0.12 -2.58 5.53 30.59 0.17 -2.42 16 3 C 0.16 4.06 2.00 44.99 0.09 4.15 16 4 H 0.07 2.03 5.21 -2.39 -0.01 2.01 16 5 N -0.74 -22.15 4.52 -318.52 -1.44 -23.59 16 6 C 0.13 5.08 6.44 38.67 0.25 5.33 16 7 C -0.17 -7.80 9.22 22.15 0.20 -7.59 16 8 C -0.15 -7.98 8.67 22.48 0.19 -7.79 16 9 C 0.04 2.00 5.58 -21.27 -0.12 1.88 16 10 C -0.51 -29.13 9.01 23.38 0.21 -28.92 16 11 H 0.07 3.66 7.94 -2.91 -0.02 3.64 16 12 C 0.04 1.97 5.04 85.23 0.43 2.40 16 13 N -0.84 -46.26 11.12 21.82 0.24 -46.01 16 14 Si 0.97 40.57 29.61 68.60 2.03 42.60 16 15 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 16 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 17 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 18 C -0.20 -10.05 9.74 22.48 0.22 -9.83 16 19 C -0.17 -7.26 9.82 22.15 0.22 -7.05 16 20 C -0.15 -3.04 3.55 -10.15 -0.04 -3.08 16 21 C 0.02 0.56 8.46 86.41 0.73 1.29 16 22 N -0.67 -14.47 8.55 -524.18 -4.48 -18.95 16 23 C 0.03 0.56 7.65 86.41 0.66 1.22 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.04 1.16 7.54 -2.39 -0.02 1.14 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 1.42 7.46 -2.39 -0.02 1.40 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.39 10.25 8.83 -92.71 -0.82 9.43 16 30 H 0.10 4.36 5.72 -2.91 -0.02 4.34 16 31 H 0.09 5.32 6.18 -2.91 -0.02 5.30 16 32 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 33 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 34 H 0.12 4.21 8.06 -2.91 -0.02 4.18 16 35 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.07 2.19 8.03 -2.38 -0.02 2.17 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.34 5.84 8.89 -89.69 -0.80 5.04 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.77 8.10 -2.39 -0.02 1.75 16 Total: -1.00 -62.40 322.81 -0.30 -62.69 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -0.57 Total: 36.71 kcal Atomic # 6 Polarization: -57.38 SS G_CDS: 3.93 Total: -53.45 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -5.68 Total: -88.56 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -62.40 -0.30 -62.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716147435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.133 kcal (2) G-P(sol) polarization free energy of solvation -62.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds