Wall clock time and date at job start Mon Mar 30 2020 06:35:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86803 * 119.99894 * 2 1
4 4 H 1.48498 * 109.47280 * 270.00294 * 3 2 1
5 5 H 1.48501 * 109.46942 * 30.00094 * 3 2 1
6 6 H 1.48500 * 109.47434 * 150.00056 * 3 2 1
7 7 C 1.37881 * 120.00506 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99682 * 0.02562 * 7 2 1
9 9 C 1.50691 * 120.00263 * 179.97438 * 7 2 1
10 10 C 1.52996 * 109.47446 * 180.02562 * 9 7 2
11 11 N 1.46893 * 109.47568 * 180.02562 * 10 9 7
12 12 C 1.46433 * 110.99880 * 192.77405 * 11 10 9
13 13 C 1.53375 * 108.65618 * 287.85057 * 12 11 10
14 14 C 1.53044 * 107.94385 * 291.79147 * 13 12 11
15 15 H 1.09002 * 109.40772 * 287.24905 * 14 13 12
16 16 C 1.53002 * 109.43726 * 167.35268 * 14 13 12
17 17 N 1.46901 * 109.47160 * 63.47026 * 16 14 13
18 18 C 1.50794 * 109.66508 * 47.29482 * 14 13 12
19 19 C 1.38613 * 118.12810 * 164.69974 * 18 14 13
20 20 C 1.38057 * 120.48529 * 179.31824 * 19 18 14
21 21 C 1.38306 * 119.88956 * 0.03270 * 20 19 18
22 22 C 1.37803 * 119.95816 * 0.13211 * 21 20 19
23 23 C 1.38380 * 122.01030 * 344.29120 * 18 14 13
24 24 H 0.96999 * 120.00319 * 359.97438 * 1 2 3
25 25 H 1.09004 * 109.47437 * 60.00325 * 9 7 2
26 26 H 1.09006 * 109.47334 * 300.00346 * 9 7 2
27 27 H 1.09006 * 109.47072 * 300.00427 * 10 9 7
28 28 H 1.09007 * 109.47104 * 59.99742 * 10 9 7
29 29 H 1.08994 * 109.60699 * 47.60445 * 12 11 10
30 30 H 1.09000 * 109.60273 * 168.10308 * 12 11 10
31 31 H 1.08998 * 109.76760 * 172.17513 * 13 12 11
32 32 H 1.08998 * 109.80077 * 51.42593 * 13 12 11
33 33 H 1.08996 * 109.47073 * 183.46819 * 16 14 13
34 34 H 1.09001 * 109.46991 * 303.46842 * 16 14 13
35 35 H 1.00904 * 110.99727 * 65.43623 * 17 16 14
36 36 H 1.00899 * 110.99983 * 189.39206 * 17 16 14
37 37 H 1.08000 * 119.75600 * 359.30959 * 19 18 14
38 38 H 1.08004 * 120.04943 * 180.02562 * 20 19 18
39 39 H 1.08001 * 120.02110 * 180.15796 * 21 20 19
40 40 H 1.07998 * 119.79564 * 179.97438 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4965 2.0465 -1.4000
5 1 1.4465 2.6527 0.7001
6 1 3.5467 1.4403 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0014
9 6 3.5115 -1.1940 -0.0011
10 6 4.0216 -2.6364 -0.0023
11 7 5.4906 -2.6363 -0.0022
12 6 6.0154 -3.9693 -0.3056
13 6 5.7753 -4.8785 0.9061
14 6 6.6699 -4.3892 2.0474
15 1 7.7063 -4.6489 1.8320
16 6 6.2387 -5.0573 3.3545
17 7 6.4426 -6.5086 3.2532
18 6 6.5453 -2.8926 2.1838
19 6 7.0144 -2.3011 3.3463
20 6 6.9375 -0.9332 3.5165
21 6 6.3883 -0.1448 2.5217
22 6 5.9167 -0.7260 1.3646
23 6 5.9901 -2.1089 1.1876
24 1 -0.4850 0.8400 0.0004
25 1 3.8752 -0.6804 0.8889
26 1 3.8745 -0.6798 -0.8911
27 1 3.6586 -3.1509 0.8875
28 1 3.6580 -3.1497 -0.8925
29 1 5.5002 -4.3759 -1.1758
30 1 7.0844 -3.9041 -0.5078
31 1 6.0316 -5.9070 0.6517
32 1 4.7294 -4.8232 1.2078
33 1 6.8346 -4.6633 4.1777
34 1 5.1843 -4.8504 3.5377
35 1 7.4234 -6.7311 3.1719
36 1 6.0269 -6.9878 4.0378
37 1 7.4431 -2.9149 4.1247
38 1 7.3056 -0.4797 4.4249
39 1 6.3294 0.9258 2.6515
40 1 5.4880 -0.1078 0.5897
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000719613685.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:35:02
Heat of formation + Delta-G solvation = 7.121890 kcal
Electronic energy + Delta-G solvation = -20007.810902 eV
Core-core repulsion = 17206.902242 eV
Total energy + Delta-G solvation = -2800.908659 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 260.158 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.75287 -37.94437 -37.26615 -35.23376 -33.57424 -31.92709 -31.24124 -30.51090
-27.53793 -25.82245 -24.29229 -23.81041 -22.67578 -21.99458 -20.08601 -19.00079
-17.82428 -17.31639 -16.71723 -16.50737 -16.18306 -15.76437 -15.45857 -15.36709
-14.89502 -14.79512 -14.42313 -14.08249 -13.86209 -13.67620 -13.27359 -13.13300
-13.01473 -12.76762 -12.46981 -12.15421 -12.03933 -11.88256 -11.77583 -11.54315
-11.40045 -11.18651 -10.78288 -10.14609 -9.58301 -9.51869 -8.76713 -8.31830
-6.35370 0.47133 0.52470 1.33693 1.34754 1.47439 2.34256 2.76440
3.02315 3.05230 3.50348 3.76302 3.89321 4.00238 4.11004 4.25051
4.30935 4.36879 4.41149 4.41841 4.53464 4.58667 4.67057 4.78974
4.81856 4.91252 4.95110 5.00233 5.05582 5.21391 5.26511 5.34764
5.43372 5.53297 5.56629 5.62382 5.68015 5.96230 6.16891 6.23260
6.24357 6.58197 6.65270 6.71556 7.28678 8.84907
Molecular weight = 260.16amu
Principal moments of inertia in cm(-1)
A = 0.021824 B = 0.006572 C = 0.005746
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1282.709605 B = 4259.363467 C = 4872.070722
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.949 5.949
2 C 0.010 3.990
3 Si 0.945 3.055
4 H -0.267 1.267
5 H -0.282 1.282
6 H -0.245 1.245
7 C -0.532 4.532
8 H 0.031 0.969
9 C -0.009 4.009
10 C 0.093 3.907
11 N -0.513 5.513
12 C 0.052 3.948
13 C -0.131 4.131
14 C -0.033 4.033
15 H 0.094 0.906
16 C 0.077 3.923
17 N -0.853 5.853
18 C -0.127 4.127
19 C -0.110 4.110
20 C -0.136 4.136
21 C -0.124 4.124
22 C -0.140 4.140
23 C 0.101 3.899
24 H 0.267 0.733
25 H 0.034 0.966
26 H 0.018 0.982
27 H 0.019 0.981
28 H 0.069 0.931
29 H 0.084 0.916
30 H 0.088 0.912
31 H 0.094 0.906
32 H 0.041 0.959
33 H 0.047 0.953
34 H 0.050 0.950
35 H 0.350 0.650
36 H 0.351 0.649
37 H 0.146 0.854
38 H 0.148 0.852
39 H 0.132 0.868
40 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.463 -8.151 8.053 22.585
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.590 5.590
2 C -0.187 4.187
3 Si 0.769 3.231
4 H -0.192 1.192
5 H -0.208 1.208
6 H -0.168 1.168
7 C -0.570 4.570
8 H 0.049 0.951
9 C -0.047 4.047
10 C -0.032 4.032
11 N -0.230 5.230
12 C -0.075 4.075
13 C -0.170 4.170
14 C -0.051 4.051
15 H 0.112 0.888
16 C -0.054 4.054
17 N -0.384 5.384
18 C -0.130 4.130
19 C -0.128 4.128
20 C -0.154 4.154
21 C -0.143 4.143
22 C -0.160 4.160
23 C 0.004 3.996
24 H 0.076 0.924
25 H 0.052 0.948
26 H 0.036 0.964
27 H 0.037 0.963
28 H 0.088 0.912
29 H 0.103 0.897
30 H 0.106 0.894
31 H 0.113 0.887
32 H 0.060 0.940
33 H 0.065 0.935
34 H 0.068 0.932
35 H 0.163 0.837
36 H 0.164 0.836
37 H 0.164 0.836
38 H 0.166 0.834
39 H 0.150 0.850
40 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 19.004 -7.735 6.957 21.666
hybrid contribution -0.363 0.538 1.084 1.263
sum 18.641 -7.197 8.041 21.539
Atomic orbital electron populations
1.70054 1.08213 1.28176 1.52558 1.25913 0.95545 1.03277 0.93958
0.85730 0.79731 0.78394 0.79290 1.19184 1.20784 1.16799 1.21372
0.91766 0.93202 1.50658 0.95067 1.19786 0.93564 0.94244 0.97064
1.21824 0.83764 0.98192 0.99438 1.58720 1.08031 1.25296 1.30945
1.22366 1.01146 0.85737 0.98227 1.22006 0.98848 1.00716 0.95438
1.19999 1.00431 0.88784 0.95925 0.88836 1.21709 1.00171 0.88452
0.95067 1.58523 1.21687 1.07118 1.51071 1.20116 1.03021 0.95989
0.93886 1.21245 0.99665 0.95183 0.96695 1.21325 1.00579 0.93927
0.99570 1.21223 0.98624 1.00769 0.93673 1.21420 1.00997 0.94180
0.99422 1.18671 0.98500 0.93153 0.89251 0.92430 0.94813 0.96390
0.96285 0.91219 0.89739 0.89374 0.88735 0.94034 0.93466 0.93173
0.83675 0.83565 0.83645 0.83402 0.85004 0.87168
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -60.82 13.96 21.45 0.30 -60.53 16
2 C 0.01 0.61 5.47 84.66 0.46 1.07 16
3 Si 0.95 45.60 27.47 68.60 1.88 47.48 16
4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16
5 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16
6 H -0.24 -10.98 6.54 99.48 0.65 -10.33 16
7 C -0.53 -31.82 9.66 25.60 0.25 -31.57 16
8 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16
9 C -0.01 -0.45 2.93 29.84 0.09 -0.37 16
10 C 0.09 3.97 4.45 86.30 0.38 4.36 16
11 N -0.51 -18.56 4.56 -695.83 -3.17 -21.73 16
12 C 0.05 1.47 5.82 86.52 0.50 1.98 16
13 C -0.13 -3.40 5.06 30.73 0.16 -3.25 16
14 C -0.03 -0.75 2.54 -11.50 -0.03 -0.78 16
15 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16
16 C 0.08 1.52 5.81 86.30 0.50 2.02 16
17 N -0.85 -13.34 9.22 -186.72 -1.72 -15.06 16
18 C -0.13 -3.63 5.41 -19.71 -0.11 -3.73 16
19 C -0.11 -2.66 9.06 22.32 0.20 -2.46 16
20 C -0.14 -3.38 10.05 22.24 0.22 -3.15 16
21 C -0.12 -3.76 10.03 22.18 0.22 -3.54 16
22 C -0.14 -5.13 7.53 22.50 0.17 -4.96 16
23 C 0.10 3.54 5.06 38.30 0.19 3.73 16
24 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16
25 H 0.03 1.68 4.11 -2.38 -0.01 1.67 16
26 H 0.02 0.89 7.55 -2.38 -0.02 0.87 16
27 H 0.02 0.86 6.99 -2.38 -0.02 0.84 16
28 H 0.07 2.96 7.84 -2.38 -0.02 2.94 16
29 H 0.08 2.28 7.84 -2.39 -0.02 2.26 16
30 H 0.09 2.22 8.11 -2.39 -0.02 2.20 16
31 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16
32 H 0.04 1.31 6.63 -2.39 -0.02 1.30 16
33 H 0.05 0.77 6.37 -2.39 -0.02 0.76 16
34 H 0.05 1.24 8.12 -2.39 -0.02 1.22 16
35 H 0.35 4.08 9.07 -89.69 -0.81 3.26 16
36 H 0.35 4.51 9.08 -89.69 -0.81 3.69 16
37 H 0.15 2.58 6.45 -2.91 -0.02 2.56 16
38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16
39 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16
40 H 0.11 4.44 6.23 -2.91 -0.02 4.43 16
Total: -1.00 -69.76 307.87 -0.12 -69.88
By element:
Atomic # 1 Polarization: 21.25 SS G_CDS: -0.63 Total: 20.62 kcal
Atomic # 6 Polarization: -43.88 SS G_CDS: 3.22 Total: -40.66 kcal
Atomic # 7 Polarization: -92.73 SS G_CDS: -4.59 Total: -97.32 kcal
Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal
Total: -69.76 -0.12 -69.88 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000719613685.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.006 kcal
(2) G-P(sol) polarization free energy of solvation -69.762 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.244 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.884 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.122 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds