Wall clock time and date at job start Mon Mar 30 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47280 * 270.00294 * 3 2 1 5 5 H 1.48501 * 109.46942 * 30.00094 * 3 2 1 6 6 H 1.48500 * 109.47434 * 150.00056 * 3 2 1 7 7 C 1.37881 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99682 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00263 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47446 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.47568 * 180.02562 * 10 9 7 12 12 C 1.46433 * 110.99880 * 192.77405 * 11 10 9 13 13 C 1.53375 * 108.65618 * 287.85057 * 12 11 10 14 14 C 1.53044 * 107.94385 * 291.79147 * 13 12 11 15 15 H 1.09002 * 109.40772 * 287.24905 * 14 13 12 16 16 C 1.53002 * 109.43726 * 167.35268 * 14 13 12 17 17 N 1.46901 * 109.47160 * 63.47026 * 16 14 13 18 18 C 1.50794 * 109.66508 * 47.29482 * 14 13 12 19 19 C 1.38613 * 118.12810 * 164.69974 * 18 14 13 20 20 C 1.38057 * 120.48529 * 179.31824 * 19 18 14 21 21 C 1.38306 * 119.88956 * 0.03270 * 20 19 18 22 22 C 1.37803 * 119.95816 * 0.13211 * 21 20 19 23 23 C 1.38380 * 122.01030 * 344.29120 * 18 14 13 24 24 H 0.96999 * 120.00319 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47437 * 60.00325 * 9 7 2 26 26 H 1.09006 * 109.47334 * 300.00346 * 9 7 2 27 27 H 1.09006 * 109.47072 * 300.00427 * 10 9 7 28 28 H 1.09007 * 109.47104 * 59.99742 * 10 9 7 29 29 H 1.08994 * 109.60699 * 47.60445 * 12 11 10 30 30 H 1.09000 * 109.60273 * 168.10308 * 12 11 10 31 31 H 1.08998 * 109.76760 * 172.17513 * 13 12 11 32 32 H 1.08998 * 109.80077 * 51.42593 * 13 12 11 33 33 H 1.08996 * 109.47073 * 183.46819 * 16 14 13 34 34 H 1.09001 * 109.46991 * 303.46842 * 16 14 13 35 35 H 1.00904 * 110.99727 * 65.43623 * 17 16 14 36 36 H 1.00899 * 110.99983 * 189.39206 * 17 16 14 37 37 H 1.08000 * 119.75600 * 359.30959 * 19 18 14 38 38 H 1.08004 * 120.04943 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.02110 * 180.15796 * 21 20 19 40 40 H 1.07998 * 119.79564 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 7 5.4906 -2.6363 -0.0022 12 6 6.0154 -3.9693 -0.3056 13 6 5.7753 -4.8785 0.9061 14 6 6.6699 -4.3892 2.0474 15 1 7.7063 -4.6489 1.8320 16 6 6.2387 -5.0573 3.3545 17 7 6.4426 -6.5086 3.2532 18 6 6.5453 -2.8926 2.1838 19 6 7.0144 -2.3011 3.3463 20 6 6.9375 -0.9332 3.5165 21 6 6.3883 -0.1448 2.5217 22 6 5.9167 -0.7260 1.3646 23 6 5.9901 -2.1089 1.1876 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6798 -0.8911 27 1 3.6586 -3.1509 0.8875 28 1 3.6580 -3.1497 -0.8925 29 1 5.5002 -4.3759 -1.1758 30 1 7.0844 -3.9041 -0.5078 31 1 6.0316 -5.9070 0.6517 32 1 4.7294 -4.8232 1.2078 33 1 6.8346 -4.6633 4.1777 34 1 5.1843 -4.8504 3.5377 35 1 7.4234 -6.7311 3.1719 36 1 6.0269 -6.9878 4.0378 37 1 7.4431 -2.9149 4.1247 38 1 7.3056 -0.4797 4.4249 39 1 6.3294 0.9258 2.6515 40 1 5.4880 -0.1078 0.5897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719613685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:02 Heat of formation + Delta-G solvation = 7.121890 kcal Electronic energy + Delta-G solvation = -20007.810902 eV Core-core repulsion = 17206.902242 eV Total energy + Delta-G solvation = -2800.908659 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.75287 -37.94437 -37.26615 -35.23376 -33.57424 -31.92709 -31.24124 -30.51090 -27.53793 -25.82245 -24.29229 -23.81041 -22.67578 -21.99458 -20.08601 -19.00079 -17.82428 -17.31639 -16.71723 -16.50737 -16.18306 -15.76437 -15.45857 -15.36709 -14.89502 -14.79512 -14.42313 -14.08249 -13.86209 -13.67620 -13.27359 -13.13300 -13.01473 -12.76762 -12.46981 -12.15421 -12.03933 -11.88256 -11.77583 -11.54315 -11.40045 -11.18651 -10.78288 -10.14609 -9.58301 -9.51869 -8.76713 -8.31830 -6.35370 0.47133 0.52470 1.33693 1.34754 1.47439 2.34256 2.76440 3.02315 3.05230 3.50348 3.76302 3.89321 4.00238 4.11004 4.25051 4.30935 4.36879 4.41149 4.41841 4.53464 4.58667 4.67057 4.78974 4.81856 4.91252 4.95110 5.00233 5.05582 5.21391 5.26511 5.34764 5.43372 5.53297 5.56629 5.62382 5.68015 5.96230 6.16891 6.23260 6.24357 6.58197 6.65270 6.71556 7.28678 8.84907 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021824 B = 0.006572 C = 0.005746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.709605 B = 4259.363467 C = 4872.070722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.532 4.532 8 H 0.031 0.969 9 C -0.009 4.009 10 C 0.093 3.907 11 N -0.513 5.513 12 C 0.052 3.948 13 C -0.131 4.131 14 C -0.033 4.033 15 H 0.094 0.906 16 C 0.077 3.923 17 N -0.853 5.853 18 C -0.127 4.127 19 C -0.110 4.110 20 C -0.136 4.136 21 C -0.124 4.124 22 C -0.140 4.140 23 C 0.101 3.899 24 H 0.267 0.733 25 H 0.034 0.966 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.350 0.650 36 H 0.351 0.649 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.132 0.868 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.463 -8.151 8.053 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.168 1.168 7 C -0.570 4.570 8 H 0.049 0.951 9 C -0.047 4.047 10 C -0.032 4.032 11 N -0.230 5.230 12 C -0.075 4.075 13 C -0.170 4.170 14 C -0.051 4.051 15 H 0.112 0.888 16 C -0.054 4.054 17 N -0.384 5.384 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.154 4.154 21 C -0.143 4.143 22 C -0.160 4.160 23 C 0.004 3.996 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.150 0.850 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 19.004 -7.735 6.957 21.666 hybrid contribution -0.363 0.538 1.084 1.263 sum 18.641 -7.197 8.041 21.539 Atomic orbital electron populations 1.70054 1.08213 1.28176 1.52558 1.25913 0.95545 1.03277 0.93958 0.85730 0.79731 0.78394 0.79290 1.19184 1.20784 1.16799 1.21372 0.91766 0.93202 1.50658 0.95067 1.19786 0.93564 0.94244 0.97064 1.21824 0.83764 0.98192 0.99438 1.58720 1.08031 1.25296 1.30945 1.22366 1.01146 0.85737 0.98227 1.22006 0.98848 1.00716 0.95438 1.19999 1.00431 0.88784 0.95925 0.88836 1.21709 1.00171 0.88452 0.95067 1.58523 1.21687 1.07118 1.51071 1.20116 1.03021 0.95989 0.93886 1.21245 0.99665 0.95183 0.96695 1.21325 1.00579 0.93927 0.99570 1.21223 0.98624 1.00769 0.93673 1.21420 1.00997 0.94180 0.99422 1.18671 0.98500 0.93153 0.89251 0.92430 0.94813 0.96390 0.96285 0.91219 0.89739 0.89374 0.88735 0.94034 0.93466 0.93173 0.83675 0.83565 0.83645 0.83402 0.85004 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.82 13.96 21.45 0.30 -60.53 16 2 C 0.01 0.61 5.47 84.66 0.46 1.07 16 3 Si 0.95 45.60 27.47 68.60 1.88 47.48 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 6 H -0.24 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.53 -31.82 9.66 25.60 0.25 -31.57 16 8 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 9 C -0.01 -0.45 2.93 29.84 0.09 -0.37 16 10 C 0.09 3.97 4.45 86.30 0.38 4.36 16 11 N -0.51 -18.56 4.56 -695.83 -3.17 -21.73 16 12 C 0.05 1.47 5.82 86.52 0.50 1.98 16 13 C -0.13 -3.40 5.06 30.73 0.16 -3.25 16 14 C -0.03 -0.75 2.54 -11.50 -0.03 -0.78 16 15 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 16 C 0.08 1.52 5.81 86.30 0.50 2.02 16 17 N -0.85 -13.34 9.22 -186.72 -1.72 -15.06 16 18 C -0.13 -3.63 5.41 -19.71 -0.11 -3.73 16 19 C -0.11 -2.66 9.06 22.32 0.20 -2.46 16 20 C -0.14 -3.38 10.05 22.24 0.22 -3.15 16 21 C -0.12 -3.76 10.03 22.18 0.22 -3.54 16 22 C -0.14 -5.13 7.53 22.50 0.17 -4.96 16 23 C 0.10 3.54 5.06 38.30 0.19 3.73 16 24 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 25 H 0.03 1.68 4.11 -2.38 -0.01 1.67 16 26 H 0.02 0.89 7.55 -2.38 -0.02 0.87 16 27 H 0.02 0.86 6.99 -2.38 -0.02 0.84 16 28 H 0.07 2.96 7.84 -2.38 -0.02 2.94 16 29 H 0.08 2.28 7.84 -2.39 -0.02 2.26 16 30 H 0.09 2.22 8.11 -2.39 -0.02 2.20 16 31 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16 32 H 0.04 1.31 6.63 -2.39 -0.02 1.30 16 33 H 0.05 0.77 6.37 -2.39 -0.02 0.76 16 34 H 0.05 1.24 8.12 -2.39 -0.02 1.22 16 35 H 0.35 4.08 9.07 -89.69 -0.81 3.26 16 36 H 0.35 4.51 9.08 -89.69 -0.81 3.69 16 37 H 0.15 2.58 6.45 -2.91 -0.02 2.56 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.11 4.44 6.23 -2.91 -0.02 4.43 16 Total: -1.00 -69.76 307.87 -0.12 -69.88 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.63 Total: 20.62 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 3.22 Total: -40.66 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -4.59 Total: -97.32 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Total: -69.76 -0.12 -69.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719613685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.006 kcal (2) G-P(sol) polarization free energy of solvation -69.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds