Wall clock time and date at job start Mon Mar 30 2020 06:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99646 * 2 1 4 4 H 1.48499 * 109.47235 * 269.99871 * 3 2 1 5 5 H 1.48497 * 109.47743 * 30.00435 * 3 2 1 6 6 H 1.48505 * 109.47088 * 150.00198 * 3 2 1 7 7 C 1.37871 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00339 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00291 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47509 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47507 * 178.11866 * 10 9 7 12 12 C 1.46426 * 110.99678 * 303.00772 * 11 10 9 13 13 C 1.53381 * 108.67171 * 181.06949 * 12 11 10 14 14 C 1.53050 * 107.93376 * 68.19987 * 13 12 11 15 15 H 1.08996 * 109.40686 * 72.69358 * 14 13 12 16 16 C 1.53001 * 109.44227 * 192.60123 * 14 13 12 17 17 N 1.46904 * 109.47162 * 296.67246 * 16 14 13 18 18 C 1.50804 * 109.65491 * 312.65579 * 14 13 12 19 19 C 1.38610 * 118.12622 * 195.70008 * 18 14 13 20 20 C 1.38052 * 120.48762 * 180.38070 * 19 18 14 21 21 C 1.38311 * 119.88737 * 359.97438 * 20 19 18 22 22 C 1.37814 * 119.95280 * 359.87501 * 21 20 19 23 23 C 1.38379 * 122.00812 * 15.82137 * 18 14 13 24 24 H 0.96995 * 120.00140 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47198 * 59.99179 * 9 7 2 26 26 H 1.08998 * 109.47055 * 300.00205 * 9 7 2 27 27 H 1.09004 * 109.47305 * 58.11728 * 10 9 7 28 28 H 1.09003 * 109.47398 * 298.11722 * 10 9 7 29 29 H 1.09000 * 109.60713 * 61.31874 * 12 11 10 30 30 H 1.08997 * 109.60610 * 300.82197 * 12 11 10 31 31 H 1.09006 * 109.77129 * 308.59462 * 13 12 11 32 32 H 1.08993 * 109.77256 * 187.80725 * 13 12 11 33 33 H 1.09004 * 109.47380 * 56.67072 * 16 14 13 34 34 H 1.09002 * 109.47020 * 176.67264 * 16 14 13 35 35 H 1.00896 * 111.00504 * 184.59701 * 17 16 14 36 36 H 1.00899 * 110.99660 * 308.55322 * 17 16 14 37 37 H 1.07998 * 119.75484 * 0.35429 * 19 18 14 38 38 H 1.08002 * 120.05681 * 180.26547 * 20 19 18 39 39 H 1.08002 * 120.02400 * 179.84863 * 21 20 19 40 40 H 1.08002 * 119.78960 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4899 -2.6367 -0.0470 12 6 5.9782 -1.9050 -1.2175 13 6 7.5110 -1.9614 -1.2276 14 6 7.9275 -3.4076 -1.5058 15 1 7.7322 -3.6460 -2.5513 16 6 9.4208 -3.5723 -1.2162 17 7 10.1939 -2.7251 -2.1341 18 6 7.1390 -4.3414 -0.6224 19 6 7.5911 -5.6440 -0.4802 20 6 6.9025 -6.5421 0.3104 21 6 5.7530 -6.1419 0.9672 22 6 5.2990 -4.8476 0.8331 23 6 5.9921 -3.9344 0.0364 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6802 0.8888 26 1 3.8745 -0.6800 -0.8911 27 1 3.6307 -3.1602 -0.8734 28 1 3.6865 -3.1403 0.9056 29 1 5.6510 -0.8667 -1.1626 30 1 5.5894 -2.3659 -2.1255 31 1 7.8979 -1.6463 -0.2585 32 1 7.8988 -1.3092 -2.0100 33 1 9.6263 -3.2754 -0.1877 34 1 9.7054 -4.6149 -1.3573 35 1 11.1848 -2.8719 -2.0138 36 1 9.9184 -2.8843 -3.0917 37 1 8.4885 -5.9587 -0.9921 38 1 7.2634 -7.5541 0.4197 39 1 5.2112 -6.8434 1.5843 40 1 4.4009 -4.5380 1.3468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719613686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:05 Heat of formation + Delta-G solvation = 24.956871 kcal Electronic energy + Delta-G solvation = -19569.982285 eV Core-core repulsion = 16769.847009 eV Total energy + Delta-G solvation = -2800.135276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.51217 -36.79325 -36.39376 -33.30667 -32.41971 -30.63018 -30.16460 -28.92407 -26.41345 -24.21074 -23.24631 -22.79782 -21.36856 -19.70767 -19.30992 -17.34583 -16.64576 -16.17857 -15.54879 -15.44109 -14.58628 -14.44990 -14.37465 -14.04942 -13.55191 -13.47115 -13.03885 -12.79091 -12.58232 -12.52759 -12.11370 -11.95290 -11.47399 -11.39152 -11.10434 -10.88287 -10.61015 -10.28488 -10.16810 -9.88293 -9.83285 -9.41635 -9.20231 -8.84122 -8.58422 -8.56697 -7.30997 -6.08246 -4.07383 1.55297 1.65566 3.29160 3.37330 3.42111 3.85419 4.23861 4.32240 4.42569 4.73197 4.84316 4.95608 5.09777 5.22728 5.25875 5.31780 5.41628 5.47477 5.56026 5.64501 5.76895 5.85571 5.92884 5.98514 6.11383 6.13170 6.20834 6.32120 6.39587 6.49026 6.59743 6.64263 6.75827 6.89442 6.99543 7.15496 7.20779 7.26049 7.50234 7.71943 7.76814 8.47344 8.94918 9.53467 11.04905 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022592 B = 0.005565 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.092222 B = 5030.092782 C = 6117.286853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.012 4.012 10 C 0.070 3.930 11 N -0.495 5.495 12 C 0.052 3.948 13 C -0.105 4.105 14 C -0.041 4.041 15 H 0.073 0.927 16 C 0.071 3.929 17 N -0.850 5.850 18 C -0.134 4.134 19 C -0.094 4.094 20 C -0.165 4.165 21 C -0.093 4.093 22 C -0.166 4.166 23 C 0.149 3.851 24 H 0.264 0.736 25 H 0.026 0.974 26 H 0.015 0.985 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.028 0.972 35 H 0.340 0.660 36 H 0.339 0.661 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.710 -9.679 -2.999 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.054 4.054 11 N -0.207 5.207 12 C -0.074 4.074 13 C -0.143 4.143 14 C -0.059 4.059 15 H 0.091 0.909 16 C -0.059 4.059 17 N -0.379 5.379 18 C -0.138 4.138 19 C -0.113 4.113 20 C -0.185 4.185 21 C -0.111 4.111 22 C -0.186 4.186 23 C 0.048 3.952 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.320 -8.580 -2.226 20.352 hybrid contribution 0.389 -0.433 -0.884 1.059 sum 18.709 -9.013 -3.111 20.999 Atomic orbital electron populations 1.69906 1.06306 1.27001 1.50789 1.24972 0.94707 0.99130 0.94357 0.86798 0.80557 0.83557 0.78573 1.20252 1.21298 1.18757 1.21006 0.89070 0.94639 1.51430 0.90979 1.19680 0.96991 0.91247 0.97058 1.22407 0.80853 1.01077 1.01105 1.58139 1.11595 1.11876 1.39052 1.22261 0.95103 0.99944 0.90095 1.21661 0.94265 0.95263 1.03073 1.20035 0.93084 0.94796 0.98023 0.90900 1.21902 0.92515 0.94019 0.97485 1.58687 1.08802 1.60972 1.09427 1.19335 0.97656 0.94907 1.01877 1.20860 0.99113 0.92651 0.98631 1.20847 0.97282 0.99363 1.00989 1.20909 0.96034 0.95608 0.98592 1.21306 1.01723 0.93391 1.02217 1.18782 0.93873 0.88098 0.94406 0.92637 0.95573 0.96654 0.94169 0.90266 0.88948 0.93831 0.90840 0.90246 0.90782 0.95372 0.84815 0.84891 0.86760 0.86792 0.86374 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.97 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.29 3.77 -27.89 -0.11 -0.39 16 10 C 0.07 1.42 4.40 -3.83 -0.02 1.40 16 11 N -0.50 -8.94 4.59 -171.29 -0.79 -9.72 16 12 C 0.05 0.85 4.99 -3.89 -0.02 0.83 16 13 C -0.10 -1.42 5.22 -26.51 -0.14 -1.56 16 14 C -0.04 -0.50 2.44 -91.69 -0.22 -0.72 16 15 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 16 C 0.07 0.72 5.84 -3.82 -0.02 0.70 16 17 N -0.85 -7.33 9.29 -10.36 -0.10 -7.43 16 18 C -0.13 -1.90 5.41 -104.38 -0.56 -2.46 16 19 C -0.09 -1.17 9.06 -39.51 -0.36 -1.53 16 20 C -0.17 -2.04 10.05 -39.62 -0.40 -2.44 16 21 C -0.09 -1.24 10.04 -39.71 -0.40 -1.64 16 22 C -0.17 -2.62 9.03 -39.22 -0.35 -2.97 16 23 C 0.15 2.47 5.82 -83.85 -0.49 1.98 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 26 H 0.02 0.36 5.71 -51.93 -0.30 0.06 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.59 5.86 -51.93 -0.30 1.29 16 29 H 0.09 1.59 6.28 -51.93 -0.33 1.26 16 30 H 0.04 0.71 8.11 -51.93 -0.42 0.29 16 31 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 32 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 34 H 0.03 0.26 6.36 -51.93 -0.33 -0.07 16 35 H 0.34 2.31 9.08 -39.29 -0.36 1.96 16 36 H 0.34 2.54 8.93 -39.29 -0.35 2.19 16 37 H 0.11 1.16 6.44 -52.49 -0.34 0.82 16 38 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 40 H 0.13 2.10 5.82 -52.49 -0.31 1.79 16 LS Contribution 310.02 15.07 4.67 4.67 Total: -1.00 -30.68 310.02 -9.57 -40.24 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.94 Total: 4.13 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -3.52 Total: -21.98 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.11 Total: -44.03 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.68 -9.57 -40.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719613686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.202 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds