Wall clock time and date at job start Mon Mar 30 2020 06:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99646 * 2 1 4 4 H 1.48499 * 109.47235 * 269.99871 * 3 2 1 5 5 H 1.48497 * 109.47743 * 30.00435 * 3 2 1 6 6 H 1.48505 * 109.47088 * 150.00198 * 3 2 1 7 7 C 1.37871 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00339 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00291 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47509 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47507 * 178.11866 * 10 9 7 12 12 C 1.46426 * 110.99678 * 303.00772 * 11 10 9 13 13 C 1.53381 * 108.67171 * 181.06949 * 12 11 10 14 14 C 1.53050 * 107.93376 * 68.19987 * 13 12 11 15 15 H 1.08996 * 109.40686 * 72.69358 * 14 13 12 16 16 C 1.53001 * 109.44227 * 192.60123 * 14 13 12 17 17 N 1.46904 * 109.47162 * 296.67246 * 16 14 13 18 18 C 1.50804 * 109.65491 * 312.65579 * 14 13 12 19 19 C 1.38610 * 118.12622 * 195.70008 * 18 14 13 20 20 C 1.38052 * 120.48762 * 180.38070 * 19 18 14 21 21 C 1.38311 * 119.88737 * 359.97438 * 20 19 18 22 22 C 1.37814 * 119.95280 * 359.87501 * 21 20 19 23 23 C 1.38379 * 122.00812 * 15.82137 * 18 14 13 24 24 H 0.96995 * 120.00140 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47198 * 59.99179 * 9 7 2 26 26 H 1.08998 * 109.47055 * 300.00205 * 9 7 2 27 27 H 1.09004 * 109.47305 * 58.11728 * 10 9 7 28 28 H 1.09003 * 109.47398 * 298.11722 * 10 9 7 29 29 H 1.09000 * 109.60713 * 61.31874 * 12 11 10 30 30 H 1.08997 * 109.60610 * 300.82197 * 12 11 10 31 31 H 1.09006 * 109.77129 * 308.59462 * 13 12 11 32 32 H 1.08993 * 109.77256 * 187.80725 * 13 12 11 33 33 H 1.09004 * 109.47380 * 56.67072 * 16 14 13 34 34 H 1.09002 * 109.47020 * 176.67264 * 16 14 13 35 35 H 1.00896 * 111.00504 * 184.59701 * 17 16 14 36 36 H 1.00899 * 110.99660 * 308.55322 * 17 16 14 37 37 H 1.07998 * 119.75484 * 0.35429 * 19 18 14 38 38 H 1.08002 * 120.05681 * 180.26547 * 20 19 18 39 39 H 1.08002 * 120.02400 * 179.84863 * 21 20 19 40 40 H 1.08002 * 119.78960 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4899 -2.6367 -0.0470 12 6 5.9782 -1.9050 -1.2175 13 6 7.5110 -1.9614 -1.2276 14 6 7.9275 -3.4076 -1.5058 15 1 7.7322 -3.6460 -2.5513 16 6 9.4208 -3.5723 -1.2162 17 7 10.1939 -2.7251 -2.1341 18 6 7.1390 -4.3414 -0.6224 19 6 7.5911 -5.6440 -0.4802 20 6 6.9025 -6.5421 0.3104 21 6 5.7530 -6.1419 0.9672 22 6 5.2990 -4.8476 0.8331 23 6 5.9921 -3.9344 0.0364 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6802 0.8888 26 1 3.8745 -0.6800 -0.8911 27 1 3.6307 -3.1602 -0.8734 28 1 3.6865 -3.1403 0.9056 29 1 5.6510 -0.8667 -1.1626 30 1 5.5894 -2.3659 -2.1255 31 1 7.8979 -1.6463 -0.2585 32 1 7.8988 -1.3092 -2.0100 33 1 9.6263 -3.2754 -0.1877 34 1 9.7054 -4.6149 -1.3573 35 1 11.1848 -2.8719 -2.0138 36 1 9.9184 -2.8843 -3.0917 37 1 8.4885 -5.9587 -0.9921 38 1 7.2634 -7.5541 0.4197 39 1 5.2112 -6.8434 1.5843 40 1 4.4009 -4.5380 1.3468 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719613686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:05 Heat of formation + Delta-G solvation = 4.311544 kcal Electronic energy + Delta-G solvation = -19570.877534 eV Core-core repulsion = 16769.847009 eV Total energy + Delta-G solvation = -2801.030525 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67379 -38.05060 -37.36521 -35.21646 -33.61198 -32.28799 -31.28060 -30.18506 -27.73559 -25.79622 -24.39282 -23.87521 -22.77980 -21.18304 -20.40047 -19.17899 -18.04006 -17.22075 -16.80812 -16.40007 -16.25569 -15.79798 -15.53939 -15.19020 -14.88377 -14.76018 -14.47232 -14.33625 -13.84549 -13.72891 -13.43119 -13.18926 -12.90006 -12.78770 -12.47751 -12.06328 -11.99712 -11.86490 -11.82034 -11.56438 -11.42307 -11.19233 -10.78079 -10.69530 -9.64118 -9.49303 -8.56239 -8.33076 -6.38216 0.48767 0.54343 1.33752 1.36499 1.48838 2.33549 2.67831 3.01499 3.02431 3.53274 3.71644 3.86937 3.91274 4.09505 4.24066 4.31206 4.33991 4.42144 4.44018 4.47776 4.53638 4.56524 4.72044 4.83187 4.85634 4.92419 4.97483 5.10447 5.18171 5.24606 5.29192 5.38412 5.42847 5.55770 5.60541 5.69501 5.96187 6.12475 6.23722 6.28054 6.46918 6.67656 6.68750 7.26591 8.83490 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022592 B = 0.005565 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.092222 B = 5030.092782 C = 6117.286853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.250 1.250 7 C -0.534 4.534 8 H 0.033 0.967 9 C -0.003 4.003 10 C 0.085 3.915 11 N -0.503 5.503 12 C 0.048 3.952 13 C -0.094 4.094 14 C -0.038 4.038 15 H 0.083 0.917 16 C 0.081 3.919 17 N -0.856 5.856 18 C -0.136 4.136 19 C -0.092 4.092 20 C -0.156 4.156 21 C -0.098 4.098 22 C -0.188 4.188 23 C 0.115 3.885 24 H 0.268 0.732 25 H 0.022 0.978 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.352 0.648 36 H 0.347 0.653 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.055 -10.285 -3.740 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.174 1.174 7 C -0.573 4.573 8 H 0.052 0.948 9 C -0.040 4.040 10 C -0.041 4.041 11 N -0.215 5.215 12 C -0.078 4.078 13 C -0.131 4.131 14 C -0.057 4.057 15 H 0.101 0.899 16 C -0.050 4.050 17 N -0.387 5.387 18 C -0.140 4.140 19 C -0.111 4.111 20 C -0.175 4.175 21 C -0.117 4.117 22 C -0.209 4.209 23 C 0.015 3.985 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 21.699 -9.217 -2.972 23.762 hybrid contribution -0.670 -0.413 -0.657 1.025 sum 21.029 -9.630 -3.629 23.412 Atomic orbital electron populations 1.70050 1.08230 1.28312 1.52195 1.25924 0.95568 1.03327 0.93819 0.85687 0.79474 0.78309 0.79415 1.18770 1.20724 1.17354 1.21309 0.91492 0.93366 1.51121 0.94832 1.19521 0.93953 0.93544 0.97010 1.22033 0.83255 0.98528 1.00241 1.58133 1.09486 1.13637 1.40290 1.22325 0.97213 0.98843 0.89426 1.21577 0.91854 0.96832 1.02876 1.20057 0.94372 0.93177 0.98063 0.89908 1.21725 0.90918 0.95228 0.97091 1.58620 1.09591 1.60772 1.09747 1.19636 0.96810 0.96196 1.01353 1.21238 0.99887 0.91701 0.98248 1.21284 0.96109 1.00823 0.99319 1.21193 0.96771 0.94817 0.98902 1.21365 1.01783 0.94820 1.02925 1.18972 0.95492 0.87654 0.96340 0.92309 0.95997 0.95720 0.95561 0.90883 0.90242 0.94234 0.92068 0.88781 0.92101 0.93580 0.83456 0.83969 0.83612 0.83487 0.84399 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 2 C 0.01 0.65 5.47 84.65 0.46 1.12 16 3 Si 0.95 44.84 27.47 68.60 1.88 46.73 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.25 -11.21 6.54 99.48 0.65 -10.55 16 7 C -0.53 -31.42 9.66 25.60 0.25 -31.17 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 9 C 0.00 -0.13 3.77 29.85 0.11 -0.01 16 10 C 0.08 3.60 4.40 86.30 0.38 3.98 16 11 N -0.50 -18.48 4.59 -695.84 -3.20 -21.68 16 12 C 0.05 1.56 4.99 86.52 0.43 1.99 16 13 C -0.09 -2.41 5.22 30.74 0.16 -2.25 16 14 C -0.04 -0.84 2.44 -11.49 -0.03 -0.86 16 15 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 16 C 0.08 1.37 5.84 86.30 0.50 1.88 16 17 N -0.86 -12.00 9.29 -186.70 -1.73 -13.73 16 18 C -0.14 -3.61 5.41 -19.71 -0.11 -3.72 16 19 C -0.09 -1.99 9.06 22.31 0.20 -1.78 16 20 C -0.16 -3.32 10.05 22.24 0.22 -3.10 16 21 C -0.10 -2.49 10.04 22.19 0.22 -2.27 16 22 C -0.19 -6.03 9.03 22.50 0.20 -5.83 16 23 C 0.11 3.79 5.82 38.30 0.22 4.02 16 24 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 26 H 0.02 1.15 5.71 -2.39 -0.01 1.14 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 3.14 5.86 -2.39 -0.01 3.13 16 29 H 0.08 2.73 6.28 -2.39 -0.01 2.71 16 30 H 0.04 1.29 8.11 -2.39 -0.02 1.27 16 31 H 0.06 1.73 8.09 -2.38 -0.02 1.72 16 32 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 33 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 34 H 0.05 0.63 6.36 -2.39 -0.02 0.61 16 35 H 0.35 3.63 9.08 -89.70 -0.81 2.81 16 36 H 0.35 4.02 8.93 -89.69 -0.80 3.22 16 37 H 0.15 2.21 6.44 -2.91 -0.02 2.19 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.11 3.89 5.82 -2.91 -0.02 3.88 16 Total: -1.00 -68.19 310.02 -0.13 -68.32 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.62 Total: 17.95 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 3.24 Total: -38.01 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -4.63 Total: -94.99 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.73 kcal Total: -68.19 -0.13 -68.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719613686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.632 kcal (2) G-P(sol) polarization free energy of solvation -68.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds