Wall clock time and date at job start Mon Mar 30 2020 06:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46899 * 2 1 4 4 O 1.42898 * 109.47105 * 120.00385 * 2 1 3 5 5 C 1.42903 * 113.99721 * 269.99786 * 4 2 1 6 6 C 1.50700 * 109.46957 * 180.02562 * 5 4 2 7 7 C 1.38629 * 119.75032 * 90.00292 * 6 5 4 8 8 C 1.37624 * 120.24653 * 180.23096 * 7 6 5 9 9 C 1.40716 * 119.74224 * 359.52057 * 8 7 6 10 10 C 1.41396 * 120.23809 * 180.23246 * 9 8 7 11 11 H 1.08004 * 119.99614 * 155.44655 * 10 9 8 12 12 C 1.39940 * 120.00247 * 335.43838 * 10 9 8 13 13 N 1.30823 * 120.00151 * 342.11422 * 12 10 9 14 14 Si 1.86806 * 119.99767 * 162.10433 * 12 10 9 15 15 H 1.48496 * 109.46866 * 94.67188 * 14 12 10 16 16 H 1.48498 * 109.46883 * 214.66477 * 14 12 10 17 17 H 1.48493 * 109.47470 * 334.66957 * 14 12 10 18 18 C 1.40712 * 119.51327 * 0.46996 * 9 8 7 19 19 C 1.37612 * 119.74657 * 359.76314 * 18 9 8 20 20 C 1.53000 * 109.46989 * 240.00258 * 2 1 3 21 21 C 1.53780 * 113.61170 * 277.49752 * 20 2 1 22 22 C 1.53780 * 87.08138 * 220.01721 * 21 20 2 23 23 C 1.53778 * 113.61407 * 179.97438 * 20 2 1 24 24 H 1.09002 * 109.47007 * 59.99984 * 1 2 3 25 25 H 1.08998 * 109.47345 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46926 * 299.99947 * 1 2 3 27 27 H 1.09002 * 109.47116 * 59.99830 * 5 4 2 28 28 H 1.09002 * 109.47088 * 300.00329 * 5 4 2 29 29 H 1.07999 * 119.87639 * 359.94983 * 7 6 5 30 30 H 1.07997 * 120.12681 * 179.71511 * 8 7 6 31 31 H 0.97002 * 120.00064 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.12762 * 179.73183 * 18 9 8 33 33 H 1.08003 * 119.88187 * 179.97438 * 19 18 9 34 34 H 1.08998 * 112.85382 * 48.80456 * 20 2 1 35 35 H 1.08997 * 113.61728 * 334.56176 * 21 20 2 36 36 H 1.08996 * 113.61643 * 105.47714 * 21 20 2 37 37 H 1.08998 * 113.61774 * 270.88741 * 22 21 20 38 38 H 1.09005 * 113.69099 * 139.99085 * 22 21 20 39 39 H 1.08998 * 113.61664 * 254.53013 * 23 20 2 40 40 H 1.09004 * 113.61625 * 25.43309 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 0.1829 2.2940 6 6 2.7015 -0.6283 3.4609 7 6 4.0649 -0.7976 3.6459 8 6 4.5339 -1.5403 4.7054 9 6 3.6238 -2.1204 5.6083 10 6 4.0942 -2.8815 6.7032 11 1 3.4837 -2.9898 7.5875 12 6 5.3507 -3.4944 6.6410 13 7 5.9370 -3.6688 5.4845 14 14 6.1911 -4.0633 8.2094 15 1 5.8880 -5.4985 8.4406 16 1 7.6591 -3.8824 8.0779 17 1 5.6942 -3.2614 9.3561 18 6 2.2421 -1.9419 5.4107 19 6 1.7956 -1.1992 4.3416 20 6 2.0400 -0.7212 -1.2493 21 6 2.0720 -2.2521 -1.1068 22 6 3.4106 -2.2158 -1.8628 23 6 3.5738 -0.7762 -1.3458 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.2538 0.6546 2.5588 28 1 2.9320 0.9513 2.0450 29 1 4.7616 -0.3486 2.9534 30 1 5.5963 -1.6747 4.8450 31 1 6.8078 -4.0939 5.4414 32 1 1.5347 -2.3863 6.0951 33 1 0.7356 -1.0611 4.1877 34 1 1.5574 -0.3764 -2.1638 35 1 2.1622 -2.5929 -0.0755 36 1 1.2759 -2.7581 -1.6529 37 1 3.3026 -2.2809 -2.9455 38 1 4.1548 -2.9083 -1.4692 39 1 3.9896 -0.0912 -2.0847 40 1 4.0747 -0.7134 -0.3797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719692627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:40 Heat of formation + Delta-G solvation = -26.335273 kcal Electronic energy + Delta-G solvation = -19137.054495 eV Core-core repulsion = 16302.402273 eV Total energy + Delta-G solvation = -2834.652222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.29297 -37.69128 -36.35469 -33.76295 -31.47835 -30.04620 -29.24783 -26.77906 -25.71509 -25.17871 -23.46300 -21.28762 -20.96576 -19.96073 -19.10796 -17.29550 -16.17885 -15.83753 -15.26927 -15.15628 -14.61588 -14.16228 -13.73503 -13.43190 -12.81240 -12.73420 -12.46008 -12.24761 -12.06406 -11.95586 -11.86904 -11.63270 -11.52197 -11.09542 -11.01313 -10.85579 -10.58760 -10.36608 -10.26185 -10.06946 -9.80583 -9.58216 -9.39094 -9.14448 -8.97385 -7.44891 -7.32692 -6.76886 -4.36170 2.70682 3.06580 3.09532 3.10153 3.16190 3.92412 4.22400 4.66757 4.74416 4.90387 4.93173 5.06313 5.34471 5.43018 5.52165 5.69764 5.74664 5.79657 5.83832 5.86493 5.92753 6.04291 6.10200 6.14572 6.21868 6.28063 6.33577 6.40782 6.42471 6.46860 6.80749 6.96092 7.07059 7.29610 7.37712 7.62168 7.78056 7.91693 8.05440 8.13819 8.30060 8.64135 8.88985 8.97708 10.17390 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.027964 B = 0.004462 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.063565 B = 6273.642118 C = 6878.147843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 H 0.052 0.948 4 O -0.369 6.369 5 C 0.129 3.871 6 C -0.221 4.221 7 C -0.080 4.080 8 C -0.170 4.170 9 C 0.115 3.885 10 C -0.462 4.462 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.790 5.790 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.275 1.275 17 H -0.260 1.260 18 C -0.230 4.230 19 C -0.070 4.070 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.133 4.133 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.281 0.719 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 5.067 -10.302 12.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.031 3.969 3 H 0.070 0.930 4 O -0.289 6.289 5 C 0.053 3.947 6 C -0.222 4.222 7 C -0.099 4.099 8 C -0.189 4.189 9 C 0.113 3.887 10 C -0.491 4.491 11 H 0.096 0.904 12 C -0.142 4.142 13 N -0.415 5.415 14 Si 0.731 3.269 15 H -0.195 1.195 16 H -0.200 1.200 17 H -0.184 1.184 18 C -0.249 4.249 19 C -0.088 4.088 20 C -0.130 4.130 21 C -0.164 4.164 22 C -0.182 4.182 23 C -0.170 4.170 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.041 4.763 -10.399 12.131 hybrid contribution 0.326 -0.070 0.563 0.654 sum -3.715 4.692 -9.836 11.514 Atomic orbital electron populations 1.22233 0.96694 1.02544 1.01310 1.21796 0.92905 0.95234 0.86921 0.92953 1.88116 1.86053 1.35442 1.19265 1.21119 0.97240 0.91433 0.84886 1.18773 0.93548 1.11278 0.98623 1.20510 0.93617 0.98492 0.97240 1.21282 0.99817 1.00423 0.97376 1.17642 0.90716 0.88791 0.91567 1.19619 1.00791 1.27046 1.01648 0.90398 1.25925 0.96965 0.94092 0.97214 1.69839 1.14874 1.31277 1.25475 0.86325 0.78696 0.79502 0.82372 1.19549 1.20008 1.18396 1.20954 0.95375 1.07694 1.00921 1.20364 0.96477 0.96928 0.95042 1.22680 0.96642 0.97125 0.96546 1.22812 0.96569 0.94979 1.02014 1.22791 0.98607 0.97543 0.99243 1.22892 0.95738 0.96654 1.01727 0.92484 0.91894 0.92713 0.94666 0.94598 0.89588 0.86459 0.90835 0.88992 0.89561 0.89106 0.88297 0.92494 0.90998 0.91506 0.92358 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 9.52 37.16 0.35 -1.75 16 2 C 0.09 1.25 2.73 -26.73 -0.07 1.18 16 3 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 4 O -0.37 -6.65 8.09 -35.23 -0.28 -6.94 16 5 C 0.13 2.38 5.86 36.01 0.21 2.59 16 6 C -0.22 -4.98 5.53 -104.33 -0.58 -5.56 16 7 C -0.08 -1.91 9.67 -39.66 -0.38 -2.30 16 8 C -0.17 -4.48 8.70 -38.87 -0.34 -4.82 16 9 C 0.12 3.12 5.57 -106.83 -0.60 2.53 16 10 C -0.46 -12.37 9.05 -37.74 -0.34 -12.71 16 11 H 0.08 2.00 7.91 -52.48 -0.42 1.58 16 12 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 13 N -0.79 -20.61 10.97 55.55 0.61 -20.00 16 14 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 15 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 18 C -0.23 -5.77 9.80 -38.88 -0.38 -6.15 16 19 C -0.07 -1.61 9.67 -39.66 -0.38 -2.00 16 20 C -0.11 -1.41 3.58 -89.81 -0.32 -1.73 16 21 C -0.13 -1.73 7.48 -25.92 -0.19 -1.92 16 22 C -0.14 -1.81 8.08 -25.90 -0.21 -2.02 16 23 C -0.13 -1.72 7.55 -25.90 -0.20 -1.92 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.68 7.87 -51.93 -0.41 0.27 16 27 H 0.04 0.60 7.81 -51.93 -0.41 0.20 16 28 H 0.04 0.62 8.02 -51.93 -0.42 0.20 16 29 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.12 3.18 6.17 -52.49 -0.32 2.86 16 31 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 32 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.66 6.98 -51.93 -0.36 1.30 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.36 7.78 -51.93 -0.40 0.96 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -27.51 327.68 -9.79 -37.30 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.50 Total: 5.81 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: -3.52 Total: -34.73 kcal Atomic # 7 Polarization: -20.61 SS G_CDS: 0.61 Total: -20.00 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.28 Total: -6.94 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.51 -9.79 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719692627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.965 kcal (2) G-P(sol) polarization free energy of solvation -27.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds