Wall clock time and date at job start Mon Mar 30 2020 06:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46899 * 2 1 4 4 O 1.42898 * 109.47105 * 120.00385 * 2 1 3 5 5 C 1.42903 * 113.99721 * 269.99786 * 4 2 1 6 6 C 1.50700 * 109.46957 * 180.02562 * 5 4 2 7 7 C 1.38629 * 119.75032 * 90.00292 * 6 5 4 8 8 C 1.37624 * 120.24653 * 180.23096 * 7 6 5 9 9 C 1.40716 * 119.74224 * 359.52057 * 8 7 6 10 10 C 1.41396 * 120.23809 * 180.23246 * 9 8 7 11 11 H 1.08004 * 119.99614 * 155.44655 * 10 9 8 12 12 C 1.39940 * 120.00247 * 335.43838 * 10 9 8 13 13 N 1.30823 * 120.00151 * 342.11422 * 12 10 9 14 14 Si 1.86806 * 119.99767 * 162.10433 * 12 10 9 15 15 H 1.48496 * 109.46866 * 94.67188 * 14 12 10 16 16 H 1.48498 * 109.46883 * 214.66477 * 14 12 10 17 17 H 1.48493 * 109.47470 * 334.66957 * 14 12 10 18 18 C 1.40712 * 119.51327 * 0.46996 * 9 8 7 19 19 C 1.37612 * 119.74657 * 359.76314 * 18 9 8 20 20 C 1.53000 * 109.46989 * 240.00258 * 2 1 3 21 21 C 1.53780 * 113.61170 * 277.49752 * 20 2 1 22 22 C 1.53780 * 87.08138 * 220.01721 * 21 20 2 23 23 C 1.53778 * 113.61407 * 179.97438 * 20 2 1 24 24 H 1.09002 * 109.47007 * 59.99984 * 1 2 3 25 25 H 1.08998 * 109.47345 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46926 * 299.99947 * 1 2 3 27 27 H 1.09002 * 109.47116 * 59.99830 * 5 4 2 28 28 H 1.09002 * 109.47088 * 300.00329 * 5 4 2 29 29 H 1.07999 * 119.87639 * 359.94983 * 7 6 5 30 30 H 1.07997 * 120.12681 * 179.71511 * 8 7 6 31 31 H 0.97002 * 120.00064 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.12762 * 179.73183 * 18 9 8 33 33 H 1.08003 * 119.88187 * 179.97438 * 19 18 9 34 34 H 1.08998 * 112.85382 * 48.80456 * 20 2 1 35 35 H 1.08997 * 113.61728 * 334.56176 * 21 20 2 36 36 H 1.08996 * 113.61643 * 105.47714 * 21 20 2 37 37 H 1.08998 * 113.61774 * 270.88741 * 22 21 20 38 38 H 1.09005 * 113.69099 * 139.99085 * 22 21 20 39 39 H 1.08998 * 113.61664 * 254.53013 * 23 20 2 40 40 H 1.09004 * 113.61625 * 25.43309 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 0.1829 2.2940 6 6 2.7015 -0.6283 3.4609 7 6 4.0649 -0.7976 3.6459 8 6 4.5339 -1.5403 4.7054 9 6 3.6238 -2.1204 5.6083 10 6 4.0942 -2.8815 6.7032 11 1 3.4837 -2.9898 7.5875 12 6 5.3507 -3.4944 6.6410 13 7 5.9370 -3.6688 5.4845 14 14 6.1911 -4.0633 8.2094 15 1 5.8880 -5.4985 8.4406 16 1 7.6591 -3.8824 8.0779 17 1 5.6942 -3.2614 9.3561 18 6 2.2421 -1.9419 5.4107 19 6 1.7956 -1.1992 4.3416 20 6 2.0400 -0.7212 -1.2493 21 6 2.0720 -2.2521 -1.1068 22 6 3.4106 -2.2158 -1.8628 23 6 3.5738 -0.7762 -1.3458 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.2538 0.6546 2.5588 28 1 2.9320 0.9513 2.0450 29 1 4.7616 -0.3486 2.9534 30 1 5.5963 -1.6747 4.8450 31 1 6.8078 -4.0939 5.4414 32 1 1.5347 -2.3863 6.0951 33 1 0.7356 -1.0611 4.1877 34 1 1.5574 -0.3764 -2.1638 35 1 2.1622 -2.5929 -0.0755 36 1 1.2759 -2.7581 -1.6529 37 1 3.3026 -2.2809 -2.9455 38 1 4.1548 -2.9083 -1.4692 39 1 3.9896 -0.0912 -2.0847 40 1 4.0747 -0.7134 -0.3797 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719692627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:40 Heat of formation + Delta-G solvation = -38.454269 kcal Electronic energy + Delta-G solvation = -19137.580014 eV Core-core repulsion = 16302.402273 eV Total energy + Delta-G solvation = -2835.177741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.44368 -39.44967 -37.72179 -35.62675 -32.87989 -31.62308 -31.16943 -28.51239 -26.75926 -26.25472 -25.18126 -22.91147 -22.34282 -21.81055 -20.16302 -19.24714 -17.47257 -17.28241 -16.88800 -16.37667 -15.93584 -15.78173 -15.46533 -15.00158 -14.38891 -13.98684 -13.86109 -13.72881 -13.58204 -13.24473 -13.22045 -13.04254 -12.81783 -12.72728 -12.57810 -12.39133 -12.11282 -11.89296 -11.48502 -11.34289 -11.26151 -11.12035 -11.02096 -10.85249 -10.24734 -9.39640 -9.27501 -8.66199 -6.37005 0.88201 1.12844 1.37250 1.46805 1.53752 2.19734 2.60800 3.13003 3.66944 3.77277 3.88411 3.90840 4.03897 4.25495 4.28014 4.39365 4.43978 4.51067 4.56821 4.61032 4.65391 4.83567 4.89000 4.93122 5.01134 5.02661 5.08972 5.13117 5.13953 5.16893 5.33936 5.37216 5.42790 5.44163 5.68425 5.74890 5.93025 6.07705 6.21573 6.35823 6.57197 6.67491 6.91330 7.00995 8.31050 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.027964 B = 0.004462 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.063565 B = 6273.642118 C = 6878.147843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.081 3.919 3 H 0.065 0.935 4 O -0.393 6.393 5 C 0.134 3.866 6 C -0.216 4.216 7 C -0.086 4.086 8 C -0.194 4.194 9 C 0.083 3.917 10 C -0.501 4.501 11 H 0.077 0.923 12 C 0.035 3.965 13 N -0.825 5.825 14 Si 0.984 3.016 15 H -0.262 1.262 16 H -0.265 1.265 17 H -0.257 1.257 18 C -0.247 4.247 19 C -0.073 4.073 20 C -0.102 4.102 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.136 4.136 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.289 0.711 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.118 6.033 -11.814 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 H 0.083 0.917 4 O -0.313 6.313 5 C 0.059 3.941 6 C -0.217 4.217 7 C -0.105 4.105 8 C -0.213 4.213 9 C 0.081 3.919 10 C -0.530 4.530 11 H 0.095 0.905 12 C -0.180 4.180 13 N -0.451 5.451 14 Si 0.804 3.196 15 H -0.186 1.186 16 H -0.189 1.189 17 H -0.181 1.181 18 C -0.266 4.266 19 C -0.092 4.092 20 C -0.120 4.120 21 C -0.171 4.171 22 C -0.178 4.178 23 C -0.173 4.173 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.881 5.737 -11.928 14.107 hybrid contribution 0.498 -0.316 0.878 1.057 sum -4.383 5.421 -11.050 13.065 Atomic orbital electron populations 1.22200 0.95205 1.02297 1.02639 1.22098 0.94095 0.95708 0.85759 0.91701 1.88073 1.86664 1.36283 1.20271 1.21001 0.98408 0.90760 0.83960 1.19257 0.92889 1.09911 0.99615 1.20761 0.94973 0.98030 0.96723 1.21262 0.99108 1.02111 0.98833 1.17999 0.91827 0.89730 0.92387 1.19882 1.02454 1.28680 1.01965 0.90485 1.26812 0.96949 0.93590 1.00663 1.69895 1.15525 1.32009 1.27643 0.85174 0.77685 0.79129 0.77609 1.18649 1.18913 1.18096 1.21179 0.94929 1.08519 1.01980 1.20700 0.98146 0.96080 0.94227 1.22757 0.96298 0.95852 0.97138 1.22736 0.97891 0.96344 1.00106 1.22829 0.97408 0.96913 1.00617 1.22847 0.96175 0.97504 1.00802 0.89636 0.92909 0.92948 0.92717 0.93269 0.87953 0.88125 0.90067 0.88353 0.86730 0.85927 0.92217 0.90984 0.88278 0.93044 0.90180 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.58 9.52 71.98 0.69 -2.89 16 2 C 0.08 2.05 2.73 30.60 0.08 2.13 16 3 H 0.06 1.50 7.79 -2.39 -0.02 1.48 16 4 O -0.39 -13.67 8.09 -148.98 -1.20 -14.87 16 5 C 0.13 4.73 5.86 71.24 0.42 5.15 16 6 C -0.22 -9.63 5.53 -19.67 -0.11 -9.74 16 7 C -0.09 -4.21 9.67 22.22 0.21 -4.00 16 8 C -0.19 -10.66 8.70 22.73 0.20 -10.46 16 9 C 0.08 4.67 5.57 -21.29 -0.12 4.55 16 10 C -0.50 -27.88 9.05 23.46 0.21 -27.67 16 11 H 0.08 4.12 7.91 -2.91 -0.02 4.09 16 12 C 0.03 1.80 5.14 85.26 0.44 2.24 16 13 N -0.82 -44.56 10.97 21.82 0.24 -44.32 16 14 Si 0.98 38.86 29.60 68.60 2.03 40.89 16 15 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 16 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 17 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 18 C -0.25 -12.68 9.80 22.73 0.22 -12.45 16 19 C -0.07 -3.37 9.67 22.22 0.21 -3.16 16 20 C -0.10 -2.30 3.58 -10.27 -0.04 -2.34 16 21 C -0.13 -3.47 7.48 31.12 0.23 -3.24 16 22 C -0.14 -3.29 8.08 31.14 0.25 -3.04 16 23 C -0.14 -3.28 7.55 31.14 0.23 -3.05 16 24 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.15 7.87 -2.39 -0.02 1.13 16 27 H 0.05 1.72 7.81 -2.39 -0.02 1.70 16 28 H 0.05 1.60 8.02 -2.39 -0.02 1.58 16 29 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 30 H 0.10 5.76 6.17 -2.91 -0.02 5.75 16 31 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 32 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 33 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 34 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 2.04 6.98 -2.39 -0.02 2.02 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.77 7.78 -2.38 -0.02 1.75 16 Total: -1.00 -61.78 327.68 5.20 -56.58 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.99 Total: 29.69 kcal Atomic # 6 Polarization: -71.11 SS G_CDS: 3.14 Total: -67.97 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.24 Total: -44.32 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -1.20 Total: -14.87 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -61.78 5.20 -56.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719692627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.127 kcal (2) G-P(sol) polarization free energy of solvation -61.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds