Wall clock time and date at job start Mon Mar 30 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46851 * 2 1 4 4 O 1.42895 * 109.47379 * 239.99549 * 2 1 3 5 5 C 1.42900 * 113.99891 * 90.00065 * 4 2 1 6 6 C 1.50703 * 109.47255 * 180.02562 * 5 4 2 7 7 C 1.38629 * 119.75127 * 90.00172 * 6 5 4 8 8 C 1.37624 * 120.24653 * 180.27643 * 7 6 5 9 9 C 1.40716 * 119.74224 * 359.52057 * 8 7 6 10 10 C 1.41396 * 120.23809 * 180.23246 * 9 8 7 11 11 H 1.08004 * 119.99614 * 155.44655 * 10 9 8 12 12 C 1.39940 * 120.00247 * 335.43838 * 10 9 8 13 13 N 1.30823 * 120.00151 * 342.11422 * 12 10 9 14 14 Si 1.86806 * 119.99767 * 162.10433 * 12 10 9 15 15 H 1.48496 * 109.46866 * 94.67188 * 14 12 10 16 16 H 1.48498 * 109.46883 * 214.66477 * 14 12 10 17 17 H 1.48493 * 109.47470 * 334.66957 * 14 12 10 18 18 C 1.40712 * 119.51327 * 0.46996 * 9 8 7 19 19 C 1.37612 * 119.74657 * 359.76314 * 18 9 8 20 20 C 1.53005 * 109.46879 * 119.99670 * 2 1 3 21 21 C 1.53775 * 113.61704 * 279.13855 * 20 2 1 22 22 C 1.53950 * 87.02150 * 220.05042 * 21 20 2 23 23 C 1.53775 * 113.61201 * 181.52856 * 20 2 1 24 24 H 1.08998 * 109.47048 * 300.00127 * 1 2 3 25 25 H 1.09003 * 109.46706 * 60.00745 * 1 2 3 26 26 H 1.08999 * 109.46851 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47078 * 59.99968 * 5 4 2 28 28 H 1.09000 * 109.47333 * 299.99996 * 5 4 2 29 29 H 1.07999 * 119.87639 * 359.97438 * 7 6 5 30 30 H 1.07997 * 120.12681 * 179.71511 * 8 7 6 31 31 H 0.97002 * 120.00064 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.12762 * 179.73183 * 18 9 8 33 33 H 1.08003 * 119.88187 * 179.97438 * 19 18 9 34 34 H 1.08997 * 112.84917 * 50.33852 * 20 2 1 35 35 H 1.09006 * 113.61433 * 334.57062 * 21 20 2 36 36 H 1.09001 * 113.61737 * 105.46849 * 21 20 2 37 37 H 1.09002 * 113.53536 * 270.81055 * 22 21 20 38 38 H 1.09002 * 113.74728 * 139.94422 * 22 21 20 39 39 H 1.09006 * 113.62069 * 254.52919 * 23 20 2 40 40 H 1.09005 * 113.61762 * 25.43548 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1828 -2.2940 6 6 2.7004 -0.6286 -3.4613 7 6 1.7939 -1.1991 -4.3413 8 6 2.2393 -1.9468 -5.4075 9 6 3.6210 -2.1226 -5.6081 10 6 4.0903 -2.8846 -6.7028 11 1 5.0808 -2.7106 -7.0967 12 6 3.2715 -3.8642 -7.2757 13 7 2.2405 -4.3236 -6.6145 14 14 3.6508 -4.5157 -8.9849 15 1 4.4628 -5.7540 -8.8737 16 1 2.3807 -4.8187 -9.6922 17 1 4.4102 -3.4926 -9.7475 18 6 4.5319 -1.5386 -4.7085 19 6 4.0638 -0.7991 -3.6466 20 6 2.0400 -0.7212 1.2493 21 6 2.0344 0.1559 2.5124 22 6 3.3855 -0.4899 2.8695 23 6 3.5733 -0.7443 1.3645 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 2.9320 0.9512 -2.0449 28 1 1.2539 0.6545 -2.5589 29 1 0.7341 -1.0605 -4.1869 30 1 1.5313 -2.3942 -6.0892 31 1 1.6731 -5.0029 -7.0114 32 1 5.5943 -1.6708 -4.8506 33 1 4.7610 -0.3503 -2.9545 34 1 1.5766 -1.6972 1.3934 35 1 2.1024 1.2234 2.3030 36 1 1.2341 -0.0893 3.2107 37 1 3.2898 -1.4024 3.4580 38 1 4.1094 0.2095 3.2878 39 1 4.0138 -1.7152 1.1374 40 1 4.0630 0.0767 0.8407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719692628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:42 Heat of formation + Delta-G solvation = -26.955925 kcal Electronic energy + Delta-G solvation = -18863.581884 eV Core-core repulsion = 16028.902749 eV Total energy + Delta-G solvation = -2834.679135 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.30842 -37.75434 -36.52496 -33.76507 -31.45213 -30.03017 -29.23086 -26.82345 -25.68613 -25.35988 -23.46842 -21.29167 -20.96451 -20.02409 -19.33919 -17.28687 -16.39995 -15.64562 -15.29079 -15.23367 -14.69045 -14.24421 -13.76813 -13.39131 -12.93023 -12.61177 -12.46160 -12.40338 -12.26367 -11.93769 -11.85147 -11.82081 -11.45875 -11.13691 -10.98035 -10.87120 -10.59857 -10.42006 -10.32906 -10.24604 -10.08367 -9.56407 -9.38436 -9.14888 -8.94536 -7.43914 -7.31835 -6.76041 -4.35384 2.71225 3.07031 3.09955 3.11036 3.16564 3.92928 4.12932 4.61520 4.64855 4.68938 4.85345 5.04893 5.26192 5.32519 5.48821 5.64685 5.71330 5.72771 5.76309 5.80107 5.82567 5.85980 5.92582 6.11835 6.13131 6.21767 6.26742 6.32861 6.41440 6.43210 6.53664 6.96868 7.07799 7.30437 7.38565 7.63057 7.78408 7.92319 8.06217 8.14765 8.30800 8.64944 8.89722 8.98566 10.18225 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.037113 B = 0.003772 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.281103 B = 7420.770818 C = 7628.275468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.091 3.909 3 H 0.052 0.948 4 O -0.372 6.372 5 C 0.129 3.871 6 C -0.221 4.221 7 C -0.080 4.080 8 C -0.169 4.169 9 C 0.115 3.885 10 C -0.462 4.462 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.789 5.789 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.275 1.275 17 H -0.260 1.260 18 C -0.230 4.230 19 C -0.069 4.069 20 C -0.105 4.105 21 C -0.133 4.133 22 C -0.145 4.145 23 C -0.127 4.127 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.281 0.719 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 6.696 11.920 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.033 3.967 3 H 0.070 0.930 4 O -0.291 6.291 5 C 0.054 3.946 6 C -0.223 4.223 7 C -0.099 4.099 8 C -0.189 4.189 9 C 0.113 3.887 10 C -0.491 4.491 11 H 0.096 0.904 12 C -0.142 4.142 13 N -0.415 5.415 14 Si 0.731 3.269 15 H -0.196 1.196 16 H -0.200 1.200 17 H -0.184 1.184 18 C -0.249 4.249 19 C -0.088 4.088 20 C -0.124 4.124 21 C -0.171 4.171 22 C -0.182 4.182 23 C -0.165 4.165 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.136 0.864 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.146 6.320 11.892 13.637 hybrid contribution -0.030 -0.192 -0.727 0.753 sum -2.176 6.128 11.165 12.921 Atomic orbital electron populations 1.22264 0.96714 1.02587 1.01404 1.21997 0.93075 0.95170 0.86462 0.93004 1.88143 1.86041 1.35637 1.19318 1.21117 0.97266 0.91371 0.84859 1.18782 0.93450 1.11173 0.98853 1.20521 0.96575 0.97291 0.95510 1.21281 0.96262 1.01866 0.99472 1.17642 0.91608 0.88920 0.90543 1.19618 1.01345 1.15532 1.12624 0.90391 1.25930 0.94004 0.95468 0.98823 1.69842 1.13487 1.21807 1.36316 0.86320 0.78918 0.79566 0.82051 1.19559 1.20021 1.18405 1.20952 0.97807 1.07799 0.98376 1.20360 0.93802 0.97949 0.96679 1.22613 0.96954 0.99661 0.93134 1.22952 0.97734 0.99277 0.97089 1.22876 0.97372 1.00727 0.97242 1.22774 0.96021 1.02518 0.95155 0.92324 0.92653 0.91936 0.94684 0.94614 0.89560 0.86447 0.90839 0.88971 0.89544 0.88922 0.90281 0.91583 0.90376 0.91700 0.91236 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.51 37.16 0.35 -1.83 16 2 C 0.09 1.30 2.47 -26.73 -0.07 1.23 16 3 H 0.05 0.69 7.62 -51.93 -0.40 0.29 16 4 O -0.37 -6.99 9.79 -35.23 -0.35 -7.33 16 5 C 0.13 2.45 5.86 36.01 0.21 2.66 16 6 C -0.22 -5.07 5.53 -104.33 -0.58 -5.65 16 7 C -0.08 -1.95 9.67 -39.66 -0.38 -2.34 16 8 C -0.17 -4.52 8.70 -38.87 -0.34 -4.85 16 9 C 0.12 3.14 5.57 -106.83 -0.60 2.55 16 10 C -0.46 -12.42 9.05 -37.74 -0.34 -12.77 16 11 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 12 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 13 N -0.79 -20.71 10.97 55.55 0.61 -20.10 16 14 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 18 C -0.23 -5.81 9.80 -38.88 -0.38 -6.19 16 19 C -0.07 -1.62 9.67 -39.66 -0.38 -2.01 16 20 C -0.11 -1.32 3.34 -89.81 -0.30 -1.62 16 21 C -0.13 -1.31 7.63 -25.83 -0.20 -1.51 16 22 C -0.14 -1.44 8.09 -25.83 -0.21 -1.65 16 23 C -0.13 -1.59 7.47 -25.92 -0.19 -1.79 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.71 7.87 -51.93 -0.41 0.31 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.03 0.61 8.02 -51.93 -0.42 0.19 16 28 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 29 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 30 H 0.12 3.21 6.17 -52.49 -0.32 2.88 16 31 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 32 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.08 0.73 7.99 -51.93 -0.41 0.32 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -28.15 330.12 -9.85 -37.99 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.56 Total: 4.70 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: -3.49 Total: -33.93 kcal Atomic # 7 Polarization: -20.71 SS G_CDS: 0.61 Total: -20.10 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.35 Total: -7.33 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.15 -9.85 -37.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719692628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.036 kcal (2) G-P(sol) polarization free energy of solvation -28.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds