Wall clock time and date at job start Mon Mar 30 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46851 * 2 1 4 4 O 1.42895 * 109.47379 * 239.99549 * 2 1 3 5 5 C 1.42900 * 113.99891 * 90.00065 * 4 2 1 6 6 C 1.50703 * 109.47255 * 180.02562 * 5 4 2 7 7 C 1.38629 * 119.75127 * 90.00172 * 6 5 4 8 8 C 1.37624 * 120.24653 * 180.27643 * 7 6 5 9 9 C 1.40716 * 119.74224 * 359.52057 * 8 7 6 10 10 C 1.41396 * 120.23809 * 180.23246 * 9 8 7 11 11 H 1.08004 * 119.99614 * 155.44655 * 10 9 8 12 12 C 1.39940 * 120.00247 * 335.43838 * 10 9 8 13 13 N 1.30823 * 120.00151 * 342.11422 * 12 10 9 14 14 Si 1.86806 * 119.99767 * 162.10433 * 12 10 9 15 15 H 1.48496 * 109.46866 * 94.67188 * 14 12 10 16 16 H 1.48498 * 109.46883 * 214.66477 * 14 12 10 17 17 H 1.48493 * 109.47470 * 334.66957 * 14 12 10 18 18 C 1.40712 * 119.51327 * 0.46996 * 9 8 7 19 19 C 1.37612 * 119.74657 * 359.76314 * 18 9 8 20 20 C 1.53005 * 109.46879 * 119.99670 * 2 1 3 21 21 C 1.53775 * 113.61704 * 279.13855 * 20 2 1 22 22 C 1.53950 * 87.02150 * 220.05042 * 21 20 2 23 23 C 1.53775 * 113.61201 * 181.52856 * 20 2 1 24 24 H 1.08998 * 109.47048 * 300.00127 * 1 2 3 25 25 H 1.09003 * 109.46706 * 60.00745 * 1 2 3 26 26 H 1.08999 * 109.46851 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47078 * 59.99968 * 5 4 2 28 28 H 1.09000 * 109.47333 * 299.99996 * 5 4 2 29 29 H 1.07999 * 119.87639 * 359.97438 * 7 6 5 30 30 H 1.07997 * 120.12681 * 179.71511 * 8 7 6 31 31 H 0.97002 * 120.00064 * 180.02562 * 13 12 10 32 32 H 1.08001 * 120.12762 * 179.73183 * 18 9 8 33 33 H 1.08003 * 119.88187 * 179.97438 * 19 18 9 34 34 H 1.08997 * 112.84917 * 50.33852 * 20 2 1 35 35 H 1.09006 * 113.61433 * 334.57062 * 21 20 2 36 36 H 1.09001 * 113.61737 * 105.46849 * 21 20 2 37 37 H 1.09002 * 113.53536 * 270.81055 * 22 21 20 38 38 H 1.09002 * 113.74728 * 139.94422 * 22 21 20 39 39 H 1.09006 * 113.62069 * 254.52919 * 23 20 2 40 40 H 1.09005 * 113.61762 * 25.43548 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1828 -2.2940 6 6 2.7004 -0.6286 -3.4613 7 6 1.7939 -1.1991 -4.3413 8 6 2.2393 -1.9468 -5.4075 9 6 3.6210 -2.1226 -5.6081 10 6 4.0903 -2.8846 -6.7028 11 1 5.0808 -2.7106 -7.0967 12 6 3.2715 -3.8642 -7.2757 13 7 2.2405 -4.3236 -6.6145 14 14 3.6508 -4.5157 -8.9849 15 1 4.4628 -5.7540 -8.8737 16 1 2.3807 -4.8187 -9.6922 17 1 4.4102 -3.4926 -9.7475 18 6 4.5319 -1.5386 -4.7085 19 6 4.0638 -0.7991 -3.6466 20 6 2.0400 -0.7212 1.2493 21 6 2.0344 0.1559 2.5124 22 6 3.3855 -0.4899 2.8695 23 6 3.5733 -0.7443 1.3645 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 2.9320 0.9512 -2.0449 28 1 1.2539 0.6545 -2.5589 29 1 0.7341 -1.0605 -4.1869 30 1 1.5313 -2.3942 -6.0892 31 1 1.6731 -5.0029 -7.0114 32 1 5.5943 -1.6708 -4.8506 33 1 4.7610 -0.3503 -2.9545 34 1 1.5766 -1.6972 1.3934 35 1 2.1024 1.2234 2.3030 36 1 1.2341 -0.0893 3.2107 37 1 3.2898 -1.4024 3.4580 38 1 4.1094 0.2095 3.2878 39 1 4.0138 -1.7152 1.1374 40 1 4.0630 0.0767 0.8407 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719692628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:42 Heat of formation + Delta-G solvation = -39.732148 kcal Electronic energy + Delta-G solvation = -18864.135902 eV Core-core repulsion = 16028.902749 eV Total energy + Delta-G solvation = -2835.233154 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38086 -39.47666 -37.90746 -35.63919 -32.87581 -31.61572 -31.15379 -28.54308 -26.69807 -26.24547 -25.19762 -22.91433 -22.33443 -21.83764 -20.29709 -19.24651 -17.63432 -17.26532 -16.81127 -16.22203 -16.10397 -15.80808 -15.48345 -15.00250 -14.44228 -13.95378 -13.82797 -13.73944 -13.53106 -13.34469 -13.28395 -12.94692 -12.83256 -12.72241 -12.62354 -12.46561 -12.05291 -11.83937 -11.45280 -11.35678 -11.32407 -11.16794 -11.08721 -11.02566 -10.23808 -9.39731 -9.27676 -8.66059 -6.36936 0.87832 1.12804 1.37541 1.47007 1.54078 2.19950 2.59389 3.05962 3.72015 3.74295 3.79325 3.94995 4.07894 4.21231 4.27064 4.32823 4.38132 4.48972 4.56007 4.58974 4.65217 4.83204 4.87578 4.88364 4.95047 5.02066 5.07799 5.12249 5.14221 5.15607 5.28854 5.34678 5.40721 5.44023 5.62749 5.68420 5.92649 6.07712 6.21294 6.35652 6.54314 6.67406 6.91295 7.00960 8.31176 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.037113 B = 0.003772 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.281103 B = 7420.770818 C = 7628.275468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.085 3.915 3 H 0.066 0.934 4 O -0.400 6.400 5 C 0.135 3.865 6 C -0.218 4.218 7 C -0.088 4.088 8 C -0.193 4.193 9 C 0.083 3.917 10 C -0.500 4.500 11 H 0.077 0.923 12 C 0.034 3.966 13 N -0.824 5.824 14 Si 0.985 3.015 15 H -0.262 1.262 16 H -0.265 1.265 17 H -0.257 1.257 18 C -0.246 4.246 19 C -0.073 4.073 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.136 4.136 23 C -0.138 4.138 24 H 0.086 0.914 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.289 0.711 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 7.810 13.256 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.028 3.972 3 H 0.084 0.916 4 O -0.320 6.320 5 C 0.059 3.941 6 C -0.219 4.219 7 C -0.106 4.106 8 C -0.213 4.213 9 C 0.081 3.919 10 C -0.530 4.530 11 H 0.096 0.904 12 C -0.181 4.181 13 N -0.450 5.450 14 Si 0.805 3.195 15 H -0.187 1.187 16 H -0.189 1.189 17 H -0.181 1.181 18 C -0.266 4.266 19 C -0.091 4.091 20 C -0.132 4.132 21 C -0.156 4.156 22 C -0.173 4.173 23 C -0.176 4.176 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.368 7.446 13.254 15.386 hybrid contribution 0.017 -0.479 -0.989 1.099 sum -2.351 6.967 12.265 14.300 Atomic orbital electron populations 1.22240 0.95599 1.02181 1.02606 1.22297 0.94004 0.95752 0.85191 0.91559 1.88076 1.86666 1.36820 1.20481 1.21011 0.98412 0.90795 0.83841 1.19268 0.93199 1.09829 0.99617 1.20781 0.97891 0.96854 0.95098 1.21261 0.96039 1.03416 1.00567 1.18001 0.92322 0.89989 0.91597 1.19886 1.02121 1.16991 1.13960 0.90443 1.26825 0.93457 0.95104 1.02699 1.69896 1.14487 1.22468 1.38155 0.85159 0.79060 0.78901 0.76371 1.18657 1.18925 1.18104 1.21180 0.98082 1.08424 0.98905 1.20698 0.94757 0.97285 0.96348 1.22681 0.96730 0.99913 0.93834 1.22916 0.98035 0.99305 0.95379 1.22850 0.97793 1.01370 0.95279 1.22829 0.95937 1.01348 0.97492 0.89545 0.93018 0.93153 0.92629 0.93219 0.87891 0.88074 0.90051 0.88286 0.86693 0.89939 0.89156 0.90028 0.89773 0.90348 0.93175 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 9.51 71.98 0.68 -3.22 16 2 C 0.08 2.23 2.47 30.60 0.08 2.30 16 3 H 0.07 1.55 7.62 -2.39 -0.02 1.53 16 4 O -0.40 -14.48 9.79 -148.98 -1.46 -15.94 16 5 C 0.13 4.84 5.86 71.24 0.42 5.25 16 6 C -0.22 -9.84 5.53 -19.67 -0.11 -9.95 16 7 C -0.09 -4.31 9.67 22.22 0.21 -4.10 16 8 C -0.19 -10.67 8.70 22.73 0.20 -10.48 16 9 C 0.08 4.70 5.57 -21.29 -0.12 4.58 16 10 C -0.50 -27.87 9.05 23.46 0.21 -27.66 16 11 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 12 C 0.03 1.77 5.14 85.26 0.44 2.21 16 13 N -0.82 -44.51 10.97 21.82 0.24 -44.27 16 14 Si 0.98 38.85 29.60 68.60 2.03 40.88 16 15 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 16 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 17 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 18 C -0.25 -12.69 9.80 22.73 0.22 -12.47 16 19 C -0.07 -3.36 9.67 22.22 0.21 -3.14 16 20 C -0.11 -2.63 3.34 -10.27 -0.03 -2.67 16 21 C -0.12 -1.95 7.63 31.18 0.24 -1.72 16 22 C -0.14 -2.34 8.09 31.18 0.25 -2.09 16 23 C -0.14 -3.29 7.47 31.12 0.23 -3.05 16 24 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.22 7.87 -2.39 -0.02 1.20 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.76 8.02 -2.39 -0.02 1.74 16 28 H 0.05 1.63 7.81 -2.39 -0.02 1.62 16 29 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.10 5.80 6.17 -2.91 -0.02 5.78 16 31 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 32 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 33 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.09 1.31 7.99 -2.38 -0.02 1.29 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.34 8.14 -2.38 -0.02 1.33 16 40 H 0.07 1.81 8.10 -2.38 -0.02 1.79 16 Total: -1.00 -62.21 330.12 4.94 -57.27 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.99 Total: 28.26 kcal Atomic # 6 Polarization: -69.35 SS G_CDS: 3.14 Total: -66.21 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.24 Total: -44.27 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.46 Total: -15.94 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -62.21 4.94 -57.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719692628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.542 kcal (2) G-P(sol) polarization free energy of solvation -62.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds