Wall clock time and date at job start Mon Mar 30 2020 06:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.67414 * 2 1 4 4 C 1.54883 * 110.75542 * 236.76184 * 2 1 3 5 5 C 1.54270 * 104.19746 * 203.55897 * 4 2 1 6 6 C 1.53873 * 106.59797 * 23.61362 * 5 4 2 7 7 H 1.08999 * 110.03586 * 240.67057 * 6 5 4 8 8 O 1.42899 * 110.03345 * 119.28281 * 6 5 4 9 9 C 1.42901 * 114.00103 * 92.09483 * 8 6 5 10 10 C 1.50696 * 109.47401 * 180.02562 * 9 8 6 11 11 C 1.38629 * 119.75030 * 89.99485 * 10 9 8 12 12 C 1.37624 * 120.24916 * 180.02562 * 11 10 9 13 13 C 1.40720 * 119.74131 * 0.02562 * 12 11 10 14 14 C 1.41399 * 120.24067 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99942 * 205.12223 * 14 13 12 16 16 C 1.39948 * 119.99989 * 25.11666 * 14 13 12 17 17 N 1.30822 * 119.99941 * 27.12237 * 16 14 13 18 18 Si 1.86799 * 119.99956 * 206.84059 * 16 14 13 19 19 H 1.48498 * 109.47139 * 90.00343 * 18 16 14 20 20 H 1.48493 * 109.47177 * 210.00263 * 18 16 14 21 21 H 1.48504 * 109.47234 * 330.00402 * 18 16 14 22 22 C 1.40708 * 119.51203 * 0.27333 * 13 12 11 23 23 C 1.37622 * 119.74896 * 359.42404 * 22 13 12 24 24 C 1.54273 * 106.64040 * 359.97438 * 6 5 4 25 25 H 1.09000 * 109.46973 * 181.78207 * 1 2 3 26 26 H 1.09007 * 109.47054 * 301.78223 * 1 2 3 27 27 H 1.08995 * 109.47192 * 61.77914 * 1 2 3 28 28 H 1.09005 * 110.48524 * 84.88298 * 4 2 1 29 29 H 1.08996 * 110.49301 * 322.24142 * 4 2 1 30 30 H 1.09000 * 110.03399 * 264.32727 * 5 4 2 31 31 H 1.08997 * 110.03431 * 142.89646 * 5 4 2 32 32 H 1.09001 * 109.47119 * 59.99570 * 9 8 6 33 33 H 1.09004 * 109.46649 * 300.00137 * 9 8 6 34 34 H 1.07997 * 119.87768 * 359.97438 * 11 10 9 35 35 H 1.08002 * 120.12904 * 179.97438 * 12 11 10 36 36 H 0.97001 * 120.00379 * 3.90405 * 17 16 14 37 37 H 1.08004 * 120.12575 * 179.70834 * 22 13 12 38 38 H 1.07993 * 119.87789 * 180.27241 * 23 22 13 39 39 H 1.09002 * 110.48569 * 95.09030 * 24 6 5 40 40 H 1.09001 * 110.48749 * 217.73503 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7939 -1.2114 5 6 3.4949 -1.2215 -0.7733 6 6 3.4975 -1.2224 0.7654 7 1 4.2363 -0.5130 1.1381 8 8 3.7884 -2.5335 1.2536 9 6 5.1771 -2.7690 1.4951 10 6 5.3673 -4.1746 2.0039 11 6 5.5842 -5.2079 1.1055 12 6 5.7587 -6.4956 1.5588 13 6 5.7156 -6.7613 2.9400 14 6 5.8941 -8.0802 3.4174 15 1 5.4784 -8.3702 4.3711 16 6 6.6093 -9.0099 2.6540 17 7 7.5313 -8.6011 1.8209 18 14 6.2528 -10.8350 2.8305 19 1 5.1953 -11.2284 1.8651 20 1 7.4889 -11.6099 2.5536 21 1 5.7907 -11.1177 4.2132 22 6 5.4885 -5.7056 3.8422 23 6 5.3229 -4.4248 3.3668 24 6 2.0834 -0.7948 1.2098 25 1 -0.3633 -1.0272 0.0320 26 1 -0.3633 0.5413 0.8736 27 1 -0.3633 0.4859 -0.9055 28 1 2.1289 -0.1564 -2.0942 29 1 1.4593 -1.6691 -1.4064 30 1 4.2320 -0.5110 -1.1475 31 1 3.7157 -2.2211 -1.1476 32 1 5.5417 -2.0605 2.2389 33 1 5.7341 -2.6403 0.5671 34 1 5.6157 -5.0018 0.0459 35 1 5.9272 -7.2991 0.8572 36 1 7.7589 -7.6594 1.7731 37 1 5.4488 -5.8991 4.9040 38 1 5.1528 -3.6123 4.0577 39 1 1.4642 -1.6702 1.4063 40 1 2.1372 -0.1584 2.0931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721553174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:24 Heat of formation + Delta-G solvation = -63.669375 kcal Electronic energy + Delta-G solvation = -18756.620435 eV Core-core repulsion = 15920.349285 eV Total energy + Delta-G solvation = -2836.271150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.02955 -37.78671 -36.05935 -33.93161 -30.97509 -30.15997 -29.37937 -28.36094 -26.43990 -24.76085 -23.50232 -21.11289 -20.32004 -20.23247 -19.90522 -17.91883 -16.63144 -15.78348 -15.26548 -14.67072 -14.53531 -14.06317 -13.88109 -13.68463 -13.41217 -13.19665 -12.52768 -12.43537 -12.20115 -12.00831 -11.81477 -11.48601 -11.31667 -11.13502 -11.02008 -10.84978 -10.77295 -10.61153 -10.43404 -10.36671 -10.25185 -9.62955 -9.47311 -9.09022 -8.95966 -7.67693 -7.54342 -7.21215 -4.45300 2.66046 2.90355 3.15869 3.23422 3.34860 4.00750 4.13945 4.48920 4.57474 4.63685 4.87921 5.16206 5.30502 5.36089 5.47425 5.49638 5.52061 5.63422 5.70338 5.73959 5.80369 5.87940 5.91678 5.99355 6.03534 6.12057 6.16056 6.26987 6.28035 6.29564 6.35931 6.78107 7.02633 7.15514 7.39590 7.64177 7.74237 7.81711 7.81840 7.97390 8.19279 8.32013 8.75866 8.88232 10.02359 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.037364 B = 0.003547 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.206908 B = 7891.818074 C = 7964.750443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.149 4.149 6 C 0.081 3.919 7 H 0.055 0.945 8 O -0.375 6.375 9 C 0.129 3.871 10 C -0.235 4.235 11 C -0.059 4.059 12 C -0.225 4.225 13 C 0.102 3.898 14 C -0.522 4.522 15 H 0.077 0.923 16 C 0.039 3.961 17 N -0.793 5.793 18 Si 1.069 2.931 19 H -0.274 1.274 20 H -0.277 1.277 21 H -0.276 1.276 22 C -0.233 4.233 23 C -0.059 4.059 24 C -0.117 4.117 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.300 0.700 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.467 12.689 -3.989 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.153 4.153 5 C -0.187 4.187 6 C 0.022 3.978 7 H 0.074 0.926 8 O -0.294 6.294 9 C 0.054 3.946 10 C -0.236 4.236 11 C -0.078 4.078 12 C -0.244 4.244 13 C 0.099 3.901 14 C -0.549 4.549 15 H 0.095 0.905 16 C -0.184 4.184 17 N -0.416 5.416 18 Si 0.893 3.107 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.252 4.252 23 C -0.077 4.077 24 C -0.154 4.154 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.120 11.066 -4.568 13.929 hybrid contribution -0.152 1.811 0.506 1.887 sum -7.272 12.877 -4.061 15.336 Atomic orbital electron populations 1.21749 0.94868 1.02043 1.01362 1.22076 0.95515 0.98863 0.95154 0.90830 1.22362 0.96131 0.99651 0.97205 1.22699 0.97168 1.02273 0.96536 1.22682 0.96503 0.85864 0.92738 0.92649 1.88150 1.26076 1.29866 1.85343 1.21089 0.81368 0.94918 0.97228 1.18718 1.18450 0.92997 0.93441 1.20447 0.97622 0.93001 0.96699 1.21104 1.12387 0.95458 0.95497 1.17703 0.88288 0.92706 0.91361 1.20632 1.32099 0.95425 1.06773 0.90526 1.27050 0.91786 1.07933 0.91582 1.70438 1.20077 1.22201 1.28880 0.83582 0.77292 0.72471 0.77399 1.19940 1.20170 1.20120 1.20902 1.14256 0.92406 0.97671 1.20413 0.97614 0.95785 0.93893 1.22520 0.95550 1.00009 0.97326 0.92403 0.92745 0.92781 0.91987 0.91350 0.91960 0.90625 0.94506 0.94470 0.89332 0.87750 0.88654 0.88853 0.89333 0.90165 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.28 37.16 0.34 -0.91 16 2 C -0.10 -0.98 3.49 -88.59 -0.31 -1.29 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.12 -1.24 6.27 -25.07 -0.16 -1.40 16 5 C -0.15 -1.87 6.61 -25.61 -0.17 -2.03 16 6 C 0.08 1.13 3.38 -25.61 -0.09 1.05 16 7 H 0.06 0.72 7.81 -51.93 -0.41 0.32 16 8 O -0.37 -6.94 9.88 -35.23 -0.35 -7.29 16 9 C 0.13 2.43 5.89 36.00 0.21 2.64 16 10 C -0.23 -5.33 5.53 -104.33 -0.58 -5.90 16 11 C -0.06 -1.41 9.67 -39.66 -0.38 -1.80 16 12 C -0.23 -5.90 7.97 -38.87 -0.31 -6.21 16 13 C 0.10 2.77 5.30 -106.82 -0.57 2.20 16 14 C -0.52 -14.07 8.98 -37.74 -0.34 -14.40 16 15 H 0.08 2.02 7.97 -52.49 -0.42 1.60 16 16 C 0.04 1.00 4.90 -17.34 -0.08 0.91 16 17 N -0.79 -21.20 12.38 55.55 0.69 -20.51 16 18 Si 1.07 21.75 30.01 -169.99 -5.10 16.65 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.23 -5.88 9.80 -38.87 -0.38 -6.26 16 23 C -0.06 -1.36 9.67 -39.66 -0.38 -1.74 16 24 C -0.12 -1.43 6.02 -25.02 -0.15 -1.58 16 25 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.07 7.95 -51.93 -0.41 0.66 16 32 H 0.04 0.64 8.04 -51.93 -0.42 0.22 16 33 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.10 2.80 6.54 -52.49 -0.34 2.46 16 36 H 0.30 8.23 6.72 -40.82 -0.27 7.95 16 37 H 0.09 2.23 8.06 -52.48 -0.42 1.81 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.08 1.10 7.98 -51.93 -0.41 0.68 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -28.02 326.63 -9.73 -37.74 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.55 Total: 5.21 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: -3.34 Total: -36.72 kcal Atomic # 7 Polarization: -21.20 SS G_CDS: 0.69 Total: -20.51 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.35 Total: -7.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.10 Total: 16.65 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.02 -9.73 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721553174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.927 kcal (2) G-P(sol) polarization free energy of solvation -28.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds