Wall clock time and date at job start Mon Mar 30 2020 06:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.67414 * 2 1 4 4 C 1.54883 * 110.75542 * 236.76184 * 2 1 3 5 5 C 1.54270 * 104.19746 * 203.55897 * 4 2 1 6 6 C 1.53873 * 106.59797 * 23.61362 * 5 4 2 7 7 H 1.08999 * 110.03586 * 240.67057 * 6 5 4 8 8 O 1.42899 * 110.03345 * 119.28281 * 6 5 4 9 9 C 1.42901 * 114.00103 * 92.09483 * 8 6 5 10 10 C 1.50696 * 109.47401 * 180.02562 * 9 8 6 11 11 C 1.38629 * 119.75030 * 89.99485 * 10 9 8 12 12 C 1.37624 * 120.24916 * 180.02562 * 11 10 9 13 13 C 1.40720 * 119.74131 * 0.02562 * 12 11 10 14 14 C 1.41399 * 120.24067 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99942 * 205.12223 * 14 13 12 16 16 C 1.39948 * 119.99989 * 25.11666 * 14 13 12 17 17 N 1.30822 * 119.99941 * 27.12237 * 16 14 13 18 18 Si 1.86799 * 119.99956 * 206.84059 * 16 14 13 19 19 H 1.48498 * 109.47139 * 90.00343 * 18 16 14 20 20 H 1.48493 * 109.47177 * 210.00263 * 18 16 14 21 21 H 1.48504 * 109.47234 * 330.00402 * 18 16 14 22 22 C 1.40708 * 119.51203 * 0.27333 * 13 12 11 23 23 C 1.37622 * 119.74896 * 359.42404 * 22 13 12 24 24 C 1.54273 * 106.64040 * 359.97438 * 6 5 4 25 25 H 1.09000 * 109.46973 * 181.78207 * 1 2 3 26 26 H 1.09007 * 109.47054 * 301.78223 * 1 2 3 27 27 H 1.08995 * 109.47192 * 61.77914 * 1 2 3 28 28 H 1.09005 * 110.48524 * 84.88298 * 4 2 1 29 29 H 1.08996 * 110.49301 * 322.24142 * 4 2 1 30 30 H 1.09000 * 110.03399 * 264.32727 * 5 4 2 31 31 H 1.08997 * 110.03431 * 142.89646 * 5 4 2 32 32 H 1.09001 * 109.47119 * 59.99570 * 9 8 6 33 33 H 1.09004 * 109.46649 * 300.00137 * 9 8 6 34 34 H 1.07997 * 119.87768 * 359.97438 * 11 10 9 35 35 H 1.08002 * 120.12904 * 179.97438 * 12 11 10 36 36 H 0.97001 * 120.00379 * 3.90405 * 17 16 14 37 37 H 1.08004 * 120.12575 * 179.70834 * 22 13 12 38 38 H 1.07993 * 119.87789 * 180.27241 * 23 22 13 39 39 H 1.09002 * 110.48569 * 95.09030 * 24 6 5 40 40 H 1.09001 * 110.48749 * 217.73503 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7939 -1.2114 5 6 3.4949 -1.2215 -0.7733 6 6 3.4975 -1.2224 0.7654 7 1 4.2363 -0.5130 1.1381 8 8 3.7884 -2.5335 1.2536 9 6 5.1771 -2.7690 1.4951 10 6 5.3673 -4.1746 2.0039 11 6 5.5842 -5.2079 1.1055 12 6 5.7587 -6.4956 1.5588 13 6 5.7156 -6.7613 2.9400 14 6 5.8941 -8.0802 3.4174 15 1 5.4784 -8.3702 4.3711 16 6 6.6093 -9.0099 2.6540 17 7 7.5313 -8.6011 1.8209 18 14 6.2528 -10.8350 2.8305 19 1 5.1953 -11.2284 1.8651 20 1 7.4889 -11.6099 2.5536 21 1 5.7907 -11.1177 4.2132 22 6 5.4885 -5.7056 3.8422 23 6 5.3229 -4.4248 3.3668 24 6 2.0834 -0.7948 1.2098 25 1 -0.3633 -1.0272 0.0320 26 1 -0.3633 0.5413 0.8736 27 1 -0.3633 0.4859 -0.9055 28 1 2.1289 -0.1564 -2.0942 29 1 1.4593 -1.6691 -1.4064 30 1 4.2320 -0.5110 -1.1475 31 1 3.7157 -2.2211 -1.1476 32 1 5.5417 -2.0605 2.2389 33 1 5.7341 -2.6403 0.5671 34 1 5.6157 -5.0018 0.0459 35 1 5.9272 -7.2991 0.8572 36 1 7.7589 -7.6594 1.7731 37 1 5.4488 -5.8991 4.9040 38 1 5.1528 -3.6123 4.0577 39 1 1.4642 -1.6702 1.4063 40 1 2.1372 -0.1584 2.0931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721553174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:24 Heat of formation + Delta-G solvation = -76.396783 kcal Electronic energy + Delta-G solvation = -18757.172337 eV Core-core repulsion = 15920.349285 eV Total energy + Delta-G solvation = -2836.823052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25714 -39.51102 -37.35169 -35.78955 -32.41967 -31.50023 -31.22729 -29.46149 -28.14531 -25.65933 -25.26501 -23.05519 -22.03156 -21.29995 -20.87724 -19.87867 -17.80953 -16.97446 -16.76161 -16.32179 -16.27765 -15.61995 -15.28481 -15.03484 -14.52526 -14.24955 -14.08690 -13.95892 -13.80997 -13.55001 -13.17579 -12.92416 -12.73794 -12.49072 -12.38079 -12.07860 -11.95338 -11.81343 -11.62019 -11.53994 -11.43768 -11.33235 -11.28831 -10.87818 -10.38752 -9.64747 -9.50724 -9.21839 -6.50068 0.78238 0.92189 1.49579 1.60941 1.78655 2.31069 2.53948 3.01137 3.56141 3.61071 3.67735 3.99063 4.15012 4.18259 4.25729 4.40724 4.42709 4.47784 4.50902 4.53647 4.65633 4.68955 4.74803 4.81897 4.88415 5.04472 5.06745 5.08745 5.11123 5.17565 5.20183 5.31288 5.34691 5.40393 5.54490 5.69985 5.75731 5.80206 6.04715 6.20778 6.35818 6.47973 6.75973 6.89920 7.98864 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.037364 B = 0.003547 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.206908 B = 7891.818074 C = 7964.750443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.091 0.909 4 C -0.115 4.115 5 C -0.149 4.149 6 C 0.071 3.929 7 H 0.071 0.929 8 O -0.401 6.401 9 C 0.134 3.866 10 C -0.227 4.227 11 C -0.067 4.067 12 C -0.243 4.243 13 C 0.073 3.927 14 C -0.558 4.558 15 H 0.072 0.928 16 C 0.004 3.996 17 N -0.813 5.813 18 Si 1.121 2.879 19 H -0.264 1.264 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.249 4.249 23 C -0.061 4.061 24 C -0.118 4.118 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.284 0.716 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.059 0.941 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 14.652 -4.377 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.110 0.890 4 C -0.152 4.152 5 C -0.187 4.187 6 C 0.013 3.987 7 H 0.089 0.911 8 O -0.321 6.321 9 C 0.059 3.941 10 C -0.228 4.228 11 C -0.085 4.085 12 C -0.262 4.262 13 C 0.071 3.929 14 C -0.586 4.586 15 H 0.090 0.910 16 C -0.213 4.213 17 N -0.436 5.436 18 Si 0.937 3.063 19 H -0.189 1.189 20 H -0.193 1.193 21 H -0.184 1.184 22 C -0.268 4.268 23 C -0.080 4.080 24 C -0.155 4.155 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.078 0.922 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.984 13.063 -4.954 16.091 hybrid contribution 0.057 1.432 0.606 1.556 sum -7.927 14.495 -4.349 17.084 Atomic orbital electron populations 1.21743 0.93998 1.01699 1.02492 1.22077 0.96215 0.99157 0.93388 0.89045 1.22375 0.94775 0.99733 0.98365 1.22694 0.98910 1.01608 0.95465 1.23024 0.97836 0.84075 0.93733 0.91119 1.88086 1.25379 1.32683 1.85948 1.20997 0.82169 0.92591 0.98362 1.19243 1.15415 0.94909 0.93210 1.20730 0.97118 0.92522 0.98137 1.21080 1.13809 0.96196 0.95131 1.18038 0.89191 0.93563 0.92138 1.20822 1.33878 0.96426 1.07482 0.90955 1.28496 0.90491 1.11911 0.90361 1.70556 1.21490 1.21068 1.30438 0.82962 0.77622 0.67277 0.78394 1.18931 1.19311 1.18418 1.21129 1.14674 0.93121 0.97900 1.20770 0.96529 0.95797 0.94865 1.22557 0.94273 0.99739 0.98953 0.93504 0.91930 0.91389 0.89983 0.92495 0.90131 0.92828 0.92418 0.93143 0.87426 0.89415 0.90407 0.88309 0.86284 0.92234 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.28 71.98 0.67 -1.48 16 2 C -0.09 -1.54 3.49 -9.48 -0.03 -1.58 16 3 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.11 -2.18 6.27 31.67 0.20 -1.98 16 5 C -0.15 -3.40 6.61 31.32 0.21 -3.19 16 6 C 0.07 1.82 3.38 31.32 0.11 1.93 16 7 H 0.07 1.60 7.81 -2.39 -0.02 1.59 16 8 O -0.40 -14.13 9.88 -148.98 -1.47 -15.60 16 9 C 0.13 4.72 5.89 71.23 0.42 5.14 16 10 C -0.23 -10.02 5.53 -19.68 -0.11 -10.13 16 11 C -0.07 -3.19 9.67 22.22 0.21 -2.98 16 12 C -0.24 -13.13 7.97 22.73 0.18 -12.95 16 13 C 0.07 4.09 5.30 -21.29 -0.11 3.98 16 14 C -0.56 -31.18 8.98 23.46 0.21 -30.97 16 15 H 0.07 3.95 7.97 -2.91 -0.02 3.92 16 16 C 0.00 0.21 4.90 85.26 0.42 0.63 16 17 N -0.81 -44.92 12.38 21.83 0.27 -44.65 16 18 Si 1.12 44.14 30.01 68.60 2.06 46.20 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 21 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 22 C -0.25 -12.71 9.80 22.73 0.22 -12.48 16 23 C -0.06 -2.79 9.67 22.22 0.21 -2.57 16 24 C -0.12 -2.63 6.02 31.70 0.19 -2.44 16 25 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 26 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.06 1.20 8.05 -2.39 -0.02 1.18 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.46 7.95 -2.39 -0.02 1.44 16 32 H 0.06 1.79 8.04 -2.39 -0.02 1.77 16 33 H 0.05 1.64 8.08 -2.39 -0.02 1.62 16 34 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 35 H 0.09 4.94 6.54 -2.91 -0.02 4.92 16 36 H 0.28 16.33 6.72 -92.71 -0.62 15.71 16 37 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 39 H 0.06 1.58 7.98 -2.39 -0.02 1.56 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -61.90 326.63 4.99 -56.91 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 1.13 Total: 28.21 kcal Atomic # 6 Polarization: -74.07 SS G_CDS: 3.00 Total: -71.07 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.27 Total: -44.65 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -1.47 Total: -15.60 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.06 Total: 46.20 kcal Total: -61.90 4.99 -56.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721553174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.484 kcal (2) G-P(sol) polarization free energy of solvation -61.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds