Wall clock time and date at job start Mon Mar 30 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 110.43252 * 2 1 4 4 C 1.54265 * 110.48512 * 122.53636 * 2 1 3 5 5 C 1.53875 * 106.59882 * 142.41746 * 4 2 1 6 6 C 1.54272 * 106.59448 * 0.02562 * 5 4 2 7 7 H 1.09001 * 110.48429 * 95.20368 * 6 5 4 8 8 O 1.42901 * 110.48394 * 217.70797 * 6 5 4 9 9 C 1.42900 * 113.99914 * 268.54601 * 8 6 5 10 10 C 1.50699 * 109.47107 * 180.02562 * 9 8 6 11 11 C 1.38635 * 119.75071 * 90.00320 * 10 9 8 12 12 C 1.37613 * 120.24981 * 180.02562 * 11 10 9 13 13 C 1.40709 * 119.74616 * 359.97438 * 12 11 10 14 14 C 1.41402 * 120.24297 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00108 * 25.62424 * 14 13 12 16 16 C 1.39948 * 119.99923 * 205.62351 * 14 13 12 17 17 N 1.30817 * 120.00049 * 200.09959 * 16 14 13 18 18 Si 1.86802 * 120.00000 * 20.09903 * 16 14 13 19 19 H 1.48497 * 109.47210 * 264.67992 * 18 16 14 20 20 H 1.48500 * 109.47157 * 144.67988 * 18 16 14 21 21 H 1.48504 * 109.46993 * 24.67824 * 18 16 14 22 22 C 1.40711 * 119.51588 * 0.27597 * 13 12 11 23 23 C 1.37626 * 119.73773 * 359.44533 * 22 13 12 24 24 C 1.54879 * 104.19803 * 336.38713 * 6 5 4 25 25 H 1.08998 * 109.46702 * 298.91311 * 1 2 3 26 26 H 1.09000 * 109.46967 * 58.91376 * 1 2 3 27 27 H 1.09001 * 109.46831 * 178.91657 * 1 2 3 28 28 H 1.09007 * 110.03248 * 23.13611 * 4 2 1 29 29 H 1.09000 * 110.03726 * 261.70506 * 4 2 1 30 30 H 1.08997 * 110.03781 * 240.71837 * 5 4 2 31 31 H 1.09003 * 110.07076 * 119.30341 * 5 4 2 32 32 H 1.09004 * 109.47397 * 60.00725 * 9 8 6 33 33 H 1.08993 * 109.47450 * 300.00130 * 9 8 6 34 34 H 1.08000 * 119.87393 * 0.03794 * 11 10 9 35 35 H 1.08009 * 120.12734 * 179.97438 * 12 11 10 36 36 H 0.97006 * 120.00158 * 5.10921 * 17 16 14 37 37 H 1.07994 * 120.13347 * 179.72638 * 22 13 12 38 38 H 1.08000 * 119.87342 * 180.27504 * 23 22 13 39 39 H 1.08995 * 110.76171 * 156.25756 * 24 6 5 40 40 H 1.09006 * 110.75714 * 279.63042 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0700 -0.7772 1.2183 5 6 3.3185 -1.5370 0.7369 6 6 3.4941 -1.1943 -0.7570 7 1 4.1938 -0.3675 -0.8790 8 8 3.9439 -2.3398 -1.4833 9 6 5.3657 -2.4439 -1.5821 10 6 5.7256 -3.6808 -2.3641 11 6 5.8658 -3.6074 -3.7414 12 6 6.1937 -4.7306 -4.4657 13 6 6.3875 -5.9567 -3.8031 14 6 6.7252 -7.1172 -4.5369 15 1 7.2299 -7.0273 -5.4873 16 6 6.4055 -8.3825 -4.0314 17 7 7.0340 -9.4413 -4.4731 18 14 5.0812 -8.5593 -2.7258 19 1 5.7112 -8.5794 -1.3812 20 1 4.3379 -9.8264 -2.9432 21 1 4.1418 -7.4126 -2.8152 22 6 6.2374 -6.0206 -2.4054 23 6 5.9147 -4.8833 -1.7008 24 6 2.0755 -0.7808 -1.2211 25 1 -0.3633 0.4969 0.8996 26 1 -0.3633 0.5306 -0.8801 27 1 -0.3633 -1.0275 -0.0194 28 1 1.3184 -1.4818 1.5746 29 1 2.3391 -0.0833 2.0146 30 1 3.1730 -2.6102 0.8596 31 1 4.1939 -1.2124 1.2995 32 1 5.7957 -2.5077 -0.5826 33 1 5.7598 -1.5648 -2.0918 34 1 5.7172 -2.6651 -4.2478 35 1 6.3020 -4.6713 -5.5387 36 1 7.7716 -9.3431 -5.0955 37 1 6.3794 -6.9574 -1.8872 38 1 5.8033 -4.9290 -0.6275 39 1 2.1286 -0.1371 -2.0991 40 1 1.4631 -1.6600 -1.4219 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721553176.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:29 Heat of formation + Delta-G solvation = -73.602451 kcal Electronic energy + Delta-G solvation = -18839.647551 eV Core-core repulsion = 16002.945670 eV Total energy + Delta-G solvation = -2836.701880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.22109 -39.50424 -37.34194 -35.70973 -32.87671 -31.55610 -31.44869 -29.50730 -28.15335 -25.55346 -24.81320 -23.42561 -21.87620 -21.50240 -20.65230 -20.11606 -17.79274 -17.27673 -16.79173 -16.44064 -16.10507 -15.78623 -15.29147 -15.05845 -14.45229 -14.39531 -14.15553 -14.08023 -13.87180 -13.46901 -13.26516 -13.00805 -12.60338 -12.56590 -12.31857 -12.05923 -11.95839 -11.78828 -11.60227 -11.54030 -11.47213 -11.27098 -11.20011 -10.95446 -10.32728 -9.59660 -9.52117 -9.35195 -6.61345 0.70468 0.85450 1.34737 1.51744 1.75536 2.15815 2.46465 3.01527 3.53553 3.65505 3.71334 4.01163 4.14576 4.21290 4.28920 4.38236 4.43105 4.49483 4.55014 4.56742 4.65006 4.71764 4.72440 4.80134 4.93145 5.01692 5.05577 5.11115 5.12513 5.16779 5.23404 5.35219 5.36878 5.38105 5.50701 5.57073 5.68957 5.80654 6.01440 6.09260 6.38605 6.50025 6.62183 6.77907 7.92879 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.031642 B = 0.004110 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.688490 B = 6810.967963 C = 7161.630443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.087 0.913 4 C -0.114 4.114 5 C -0.149 4.149 6 C 0.071 3.929 7 H 0.075 0.925 8 O -0.399 6.399 9 C 0.131 3.869 10 C -0.214 4.214 11 C -0.059 4.059 12 C -0.236 4.236 13 C 0.078 3.922 14 C -0.549 4.549 15 H 0.050 0.950 16 C 0.014 3.986 17 N -0.838 5.838 18 Si 1.104 2.896 19 H -0.258 1.258 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.261 4.261 23 C -0.058 4.058 24 C -0.117 4.117 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.280 0.720 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.653 17.978 11.418 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.106 0.894 4 C -0.152 4.152 5 C -0.187 4.187 6 C 0.014 3.986 7 H 0.093 0.907 8 O -0.319 6.319 9 C 0.055 3.945 10 C -0.215 4.215 11 C -0.077 4.077 12 C -0.255 4.255 13 C 0.076 3.924 14 C -0.578 4.578 15 H 0.068 0.932 16 C -0.200 4.200 17 N -0.461 5.461 18 Si 0.926 3.074 19 H -0.184 1.184 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.280 4.280 23 C -0.076 4.076 24 C -0.155 4.155 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.141 0.859 39 H 0.092 0.908 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.527 16.661 12.136 23.145 hybrid contribution 1.672 0.616 -1.600 2.395 sum -8.854 17.277 10.537 22.089 Atomic orbital electron populations 1.21788 0.94030 1.01792 1.02368 1.21902 0.96314 0.99263 0.93483 0.89448 1.22144 0.96281 0.98883 0.97867 1.22662 0.99357 1.00792 0.95886 1.23206 0.96435 0.87742 0.91222 0.90677 1.88062 1.22264 1.46134 1.75476 1.21061 0.80965 0.94511 0.97941 1.19358 1.13003 0.95302 0.93821 1.20835 0.96107 0.97235 0.93570 1.21162 1.11957 0.94035 0.98374 1.17961 0.88592 0.93460 0.92432 1.20674 1.37523 0.93186 1.06410 0.93218 1.28276 1.00478 0.91166 1.00093 1.70595 1.16963 1.33160 1.25389 0.83193 0.74134 0.76351 0.73753 1.18362 1.20536 1.19204 1.21124 1.14499 0.98450 0.93924 1.20815 0.95800 0.91979 0.99052 1.22629 0.94330 0.99868 0.98631 0.91440 0.92212 0.93236 0.91689 0.90304 0.92514 0.90937 0.92442 0.92207 0.85869 0.88417 0.90967 0.88058 0.85919 0.90815 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.12 71.99 0.66 -1.29 16 2 C -0.09 -1.42 3.45 -9.72 -0.03 -1.45 16 3 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.11 -1.84 6.37 31.32 0.20 -1.64 16 5 C -0.15 -3.08 6.56 31.32 0.21 -2.88 16 6 C 0.07 1.68 3.32 31.67 0.11 1.79 16 7 H 0.08 1.53 7.86 -2.39 -0.02 1.52 16 8 O -0.40 -12.88 10.04 -148.98 -1.50 -14.38 16 9 C 0.13 4.08 5.91 71.24 0.42 4.50 16 10 C -0.21 -8.56 5.53 -19.67 -0.11 -8.66 16 11 C -0.06 -2.49 9.67 22.22 0.21 -2.27 16 12 C -0.24 -11.45 9.80 22.73 0.22 -11.22 16 13 C 0.08 4.16 5.20 -21.29 -0.11 4.05 16 14 C -0.55 -31.53 9.44 23.46 0.22 -31.30 16 15 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 16 C 0.01 0.80 5.40 85.26 0.46 1.26 16 17 N -0.84 -47.28 13.65 21.83 0.30 -46.98 16 18 Si 1.10 50.80 24.83 68.60 1.70 52.51 16 19 H -0.26 -10.91 6.64 99.48 0.66 -10.24 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.27 -12.48 6.84 99.48 0.68 -11.80 16 22 C -0.26 -12.80 7.21 22.73 0.16 -12.64 16 23 C -0.06 -2.49 9.67 22.22 0.21 -2.28 16 24 C -0.12 -2.44 6.05 31.87 0.19 -2.25 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 1.07 7.84 -2.38 -0.02 1.05 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.39 8.07 -2.39 -0.02 1.37 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16 33 H 0.06 1.64 8.04 -2.39 -0.02 1.62 16 34 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 35 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 36 H 0.28 15.58 8.73 -92.70 -0.81 14.77 16 37 H 0.10 4.90 4.26 -2.91 -0.01 4.89 16 38 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.49 8.06 -2.38 -0.02 1.48 16 Total: -1.00 -61.40 321.96 4.41 -56.99 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.88 Total: 18.15 kcal Atomic # 6 Polarization: -69.32 SS G_CDS: 3.03 Total: -66.29 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.30 Total: -46.98 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.50 Total: -14.38 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 1.70 Total: 52.51 kcal Total: -61.40 4.41 -56.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721553176.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.611 kcal (2) G-P(sol) polarization free energy of solvation -61.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds