Wall clock time and date at job start Mon Mar 30 2020 06:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38314 * 119.96266 * 2 1 4 4 C 1.38260 * 120.15193 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07575 * 359.74871 * 4 3 2 6 6 C 1.50696 * 120.04307 * 180.27158 * 5 4 3 7 7 N 1.46896 * 109.47341 * 260.21187 * 6 5 4 8 8 C 1.38894 * 119.91995 * 0.48277 * 5 4 3 9 9 N 1.39679 * 120.07377 * 179.78959 * 8 5 4 10 10 C 1.46900 * 111.00047 * 243.68023 * 9 8 5 11 11 C 1.50702 * 109.46837 * 162.66680 * 10 9 8 12 12 H 1.07998 * 120.00319 * 354.49345 * 11 10 9 13 13 C 1.37880 * 119.99809 * 174.49053 * 11 10 9 14 14 N 1.31510 * 119.99996 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00053 * 179.72301 * 13 11 10 16 16 H 1.48500 * 109.47684 * 270.28071 * 15 13 11 17 17 H 1.48504 * 109.46857 * 30.27945 * 15 13 11 18 18 H 1.48499 * 109.47211 * 150.28027 * 15 13 11 19 19 C 1.46898 * 110.99890 * 119.72587 * 9 8 5 20 20 C 1.53001 * 117.49946 * 266.42794 * 19 9 8 21 21 C 1.53003 * 117.49874 * 197.80502 * 19 9 8 22 22 C 1.38076 * 119.96597 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47265 * 270.02427 * 1 2 3 24 24 H 1.09006 * 109.47655 * 30.01947 * 1 2 3 25 25 H 1.08997 * 109.47396 * 150.02197 * 1 2 3 26 26 H 1.08007 * 119.92415 * 359.97438 * 3 2 1 27 27 H 1.07999 * 119.96449 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46848 * 20.21347 * 6 5 4 29 29 H 1.08999 * 109.47056 * 140.21197 * 6 5 4 30 30 H 1.00897 * 110.99948 * 179.97438 * 7 6 5 31 31 H 1.00899 * 110.99957 * 303.95348 * 7 6 5 32 32 H 1.08994 * 109.47133 * 42.66929 * 10 9 8 33 33 H 1.08999 * 109.46926 * 282.66560 * 10 9 8 34 34 H 0.97001 * 120.00182 * 359.71498 * 14 13 11 35 35 H 1.09001 * 115.55060 * 52.12973 * 19 9 8 36 36 H 1.09010 * 117.49786 * 359.97438 * 20 19 9 37 37 H 1.09001 * 117.50471 * 145.01916 * 20 19 9 38 38 H 1.08998 * 117.50022 * 214.97993 * 21 19 9 39 39 H 1.08998 * 117.49815 * 0.02562 * 21 19 9 40 40 H 1.08000 * 120.03642 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5803 1.2029 -0.0005 5 6 4.2765 0.0099 0.0042 6 6 5.7834 0.0157 0.0098 7 7 6.2791 -0.2202 -1.3528 8 6 3.5859 -1.1952 -0.0007 9 7 4.2867 -2.4035 -0.0004 10 6 4.0294 -3.1616 -1.2321 11 6 5.0904 -4.2182 -1.4024 12 1 5.9257 -4.2599 -0.7191 13 6 4.9947 -5.1317 -2.4308 14 7 3.9779 -5.0807 -3.2631 15 14 6.3139 -6.4365 -2.6467 16 1 7.3853 -5.9155 -3.5332 17 1 6.8910 -6.7807 -1.3223 18 1 5.7141 -7.6507 -3.2560 19 6 3.9581 -3.2023 1.1878 20 6 4.8678 -3.0583 2.4096 21 6 4.9164 -4.3336 1.5656 22 6 2.1966 -1.1962 0.0005 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6558 2.1326 -0.0004 27 1 4.1166 2.1403 -0.0001 28 1 6.1416 0.9822 0.3645 29 1 6.1473 -0.7714 0.6702 30 1 7.2878 -0.2205 -1.3756 31 1 5.9084 -1.0801 -1.7285 32 1 4.0501 -2.4849 -2.0862 33 1 3.0504 -3.6367 -1.1684 34 1 3.2930 -4.4030 -3.1512 35 1 2.8950 -3.3621 1.3676 36 1 5.7104 -2.3711 2.3315 37 1 4.4033 -3.1233 3.3935 38 1 4.4838 -5.2376 1.9943 39 1 5.7909 -4.4849 0.9328 40 1 1.6566 -2.1315 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723162054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:29 Heat of formation + Delta-G solvation = 50.833743 kcal Electronic energy + Delta-G solvation = -20057.406359 eV Core-core repulsion = 17258.393188 eV Total energy + Delta-G solvation = -2799.013171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.76301 -37.26127 -34.73994 -33.88281 -32.68620 -31.47796 -29.01251 -27.18834 -26.04957 -23.25934 -22.71761 -22.36216 -21.66581 -20.23719 -19.38678 -17.10543 -16.21719 -15.67334 -15.36010 -14.75596 -14.40752 -14.19041 -13.83661 -13.74251 -13.52898 -13.44462 -12.80314 -12.48213 -12.37314 -12.13077 -11.73321 -11.63817 -11.36491 -11.07585 -10.91415 -10.73452 -10.63623 -10.49988 -10.14442 -9.86591 -9.37917 -8.81050 -8.39804 -8.39222 -8.25311 -7.92829 -7.60744 -6.37616 -4.08187 1.68284 1.73820 3.41369 3.43985 3.59281 4.02761 4.38874 4.47153 4.60204 5.07137 5.11598 5.26314 5.35369 5.39265 5.43082 5.52584 5.56939 5.64939 5.69460 5.77458 5.82365 5.93195 5.99011 6.04705 6.12923 6.18066 6.31905 6.48012 6.57306 6.73372 6.82014 6.84706 6.91121 6.99152 7.09002 7.30826 7.64078 7.79779 7.89836 8.01984 8.33676 8.55968 8.83294 9.61559 10.99770 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.006757 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.050455 B = 4142.623578 C = 4267.405159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.137 4.137 4 C -0.099 4.099 5 C -0.072 4.072 6 C 0.117 3.883 7 N -0.847 5.847 8 C 0.124 3.876 9 N -0.474 5.474 10 C 0.195 3.805 11 C -0.584 4.584 12 H 0.063 0.937 13 C 0.015 3.985 14 N -0.913 5.913 15 Si 1.071 2.929 16 H -0.288 1.288 17 H -0.288 1.288 18 H -0.286 1.286 19 C 0.028 3.972 20 C -0.183 4.183 21 C -0.147 4.147 22 C -0.151 4.151 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.333 0.667 31 H 0.359 0.641 32 H 0.019 0.981 33 H -0.012 1.012 34 H 0.267 0.733 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 9.018 9.083 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.156 4.156 4 C -0.118 4.118 5 C -0.073 4.073 6 C -0.013 4.013 7 N -0.378 5.378 8 C 0.029 3.971 9 N -0.195 5.195 10 C 0.071 3.929 11 C -0.622 4.622 12 H 0.081 0.919 13 C -0.188 4.188 14 N -0.549 5.549 15 Si 0.900 3.100 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.212 1.212 19 C -0.080 4.080 20 C -0.221 4.221 21 C -0.184 4.184 22 C -0.172 4.172 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.174 0.826 32 H 0.037 0.963 33 H 0.005 0.995 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.888 8.473 7.955 11.656 hybrid contribution -1.077 0.238 1.242 1.661 sum -1.965 8.711 9.197 12.819 Atomic orbital electron populations 1.20754 0.91781 1.02447 1.01789 1.19727 0.95587 0.93059 1.00082 1.20860 0.94134 0.96953 1.03612 1.20862 0.93808 0.97151 0.99972 1.19690 0.95576 0.91552 1.00501 1.20394 0.90430 0.99613 0.90890 1.58906 1.12771 1.45117 1.20973 1.18929 0.89960 0.91883 0.96309 1.59544 1.54662 1.02036 1.03281 1.19855 0.96034 0.92352 0.84638 1.22002 1.09239 1.14839 1.16122 0.91920 1.25780 1.00516 0.99678 0.92871 1.70755 1.11049 1.35883 1.37257 0.83501 0.74875 0.75926 0.75709 1.21495 1.21455 1.21160 1.22047 0.93803 1.00692 0.91458 1.23017 1.02754 1.02171 0.94140 1.23076 1.02948 0.91055 1.01294 1.21600 0.95010 0.97593 1.02963 0.91631 0.91833 0.91816 0.86682 0.86326 0.92066 0.93875 0.85566 0.82643 0.96285 0.99469 0.92257 0.91026 0.89117 0.89979 0.89872 0.86652 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 36.00 0.36 -1.01 16 2 C -0.08 -1.31 5.88 -104.66 -0.62 -1.92 16 3 C -0.14 -2.02 9.70 -39.55 -0.38 -2.40 16 4 C -0.10 -1.53 9.66 -39.61 -0.38 -1.92 16 5 C -0.07 -1.27 5.41 -104.42 -0.56 -1.83 16 6 C 0.12 1.93 6.54 -4.98 -0.03 1.90 16 7 N -0.85 -14.68 9.61 -11.41 -0.11 -14.79 16 8 C 0.12 2.40 4.59 -83.78 -0.38 2.02 16 9 N -0.47 -9.85 3.54 -164.92 -0.58 -10.43 16 10 C 0.19 4.83 3.45 -4.97 -0.02 4.81 16 11 C -0.58 -15.44 8.05 -34.44 -0.28 -15.71 16 12 H 0.06 1.64 5.48 -52.49 -0.29 1.35 16 13 C 0.02 0.43 5.46 -17.82 -0.10 0.33 16 14 N -0.91 -27.17 13.65 55.43 0.76 -26.41 16 15 Si 1.07 24.66 29.90 -169.99 -5.08 19.57 16 16 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.03 0.54 4.57 -67.71 -0.31 0.23 16 20 C -0.18 -3.02 10.46 -26.73 -0.28 -3.30 16 21 C -0.15 -2.73 9.38 -26.73 -0.25 -2.98 16 22 C -0.15 -2.77 8.36 -39.38 -0.33 -3.10 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 25 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 26 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 27 H 0.12 1.57 8.04 -52.49 -0.42 1.15 16 28 H 0.06 0.88 8.01 -51.93 -0.42 0.46 16 29 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 30 H 0.33 5.00 9.08 -39.29 -0.36 4.64 16 31 H 0.36 7.30 8.44 -39.29 -0.33 6.97 16 32 H 0.02 0.52 7.79 -51.93 -0.40 0.11 16 33 H -0.01 -0.34 7.52 -51.93 -0.39 -0.73 16 34 H 0.27 8.00 7.18 -40.82 -0.29 7.71 16 35 H 0.07 1.40 7.36 -51.93 -0.38 1.01 16 36 H 0.09 1.50 7.94 -51.92 -0.41 1.09 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.12 2.39 5.65 -51.93 -0.29 2.10 16 40 H 0.11 2.14 7.47 -52.49 -0.39 1.75 16 LS Contribution 325.75 15.07 4.91 4.91 Total: -1.00 -28.82 325.75 -9.78 -38.60 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.10 Total: 13.45 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -3.56 Total: -24.89 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.06 Total: -51.64 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.08 Total: 19.57 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.82 -9.78 -38.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723162054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.434 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds